Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > Z2186 > L1066 > PR4692

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
237481
22848291-C-T 20686405-C-T BY141227 YY+
22476231-G-C 20314345-G-C BY223536 DYZ19 +
22261196-C-T 20099310-C-T BY24397 DYZ19 +
22261173-G-T 20099287-G-T DYZ19 +
22261170-G-A 20099284-G-A DYZ19 +
22261167-A-G 20099281-A-G DYZ19 +
21731580-A-G 19569694-A-G BY135072 YY+
19139901-T-C 17028021-T-C S21846 L1443 YY+
18613135-A-C 16501255-A-C BY122600 YY+
15524227-CT-C 13412347-CT-C +
15138732-A-G 13026819-A-G BY99894 YY+
14744722-A-G 12632791-A-G BY97350 YY+
14410499-C-T 12289796-C-T BY95568 YY+
9904732-C-T 10067123-C-T BY42858 Y+
13858120-C-T 11737414-C-T DYZ17 **
28802841-T-G 26656694-T-G **
13855635-C-G 11734929-C-G DYZ17 **
20602077-G-A 18440191-G-A P5_Dst **
16450159-C-A 14338279-C-A F339 M2324 **
20045274-A-AAAAGAAAAG 17933394-A-AAAAGAAAAG P5_Prx 14×AAAG**
15619125-C-A 13507245-C-A **
13452837-ACTC-A 11297161-ACTC-A **
9444545-C-T 9606936-C-T L298/P326[LT]PF5535 M2443 **
13455671-T-C 11299995-T-C ***
13455728-C-T 11300052-C-T ***
13865720-A-G 11745014-A-G DYZ17 ***
13846548-T-C 11725842-T-C DYZ17 ***
13862157-AATCAG-A 11741451-AATCAG-A DYZ17 ***
22284866-G-C 20122980-G-C DYZ19 ***
13143648-T-A 10633134-T-A ***
13829428-A-T 11708722-A-T DYZ17 ***
13657030-T-A 11501354-T-A DYZ17 ***
13805306-A-C 11684600-A-C DYZ17 ***
13813493-A-AC 11692787-A-AC DYZ17 ***
58865990-G-T 56724881-C-A ***
13652195-ATGGAG-A 11496519-ATGGAG-A DYZ17 ***
13459218-C-T 11303542-C-T ***
13829429-A-G 11708723-A-G DYZ17 ***
13852245-A-T 11731539-A-T DYZ17 ***
26152241-T-C 24006094-T-C P1_Y1 ***
13455112-T-G 11299436-T-G ***
6224717-CA-C 6356676-CA-C IR3_Dst 12×A***
20771714-G-A 18609828-G-A P4_Prx 25×A***
28800259-A-G 26654112-A-G ***
13837370-T-G 11716664-T-G FT328632 DYZ17 ***
58979654-A-C,T 56833507-A-C,T ***
13801547-T-A 11680841-T-A DYZ17 ***
58972694-C-T 56826547-C-T ***
13812237-A-C 11691531-A-C DYZ17 ***
13837358-A-T 11716652-A-T DYZ17 ***
13837364-T-A 11716658-T-A DYZ17 ***
13865715-C-G 11745009-C-G DYZ17 ***
13480608-A-G,T 11324932-A-G,T ***
13664634-G-C 11508958-G-C DYZ17 ***
13867983-A-C 11747277-A-C DYZ17 ***
13486018-T-G 11330342-T-G ***
13830256-A-C 11709550-A-C DYZ17 ***
13830257-A-T 11709551-A-T DYZ17 ***
22147861-T-C 19985975-T-C ***
22147866-T-C 19985980-T-C ***
9968247-T-A 10130638-T-A ***
13804721-G-T 11684015-G-T DYZ17 ***
13804726-A-G 11684020-A-G DYZ17 ***
13818692-C-T 11697986-C-T DYZ17 ***
13862607-A-C 11741901-A-C DYZ17 ***
27016158-CTT-C 24870011-CTT-C P1_r4 19×T***
13812226-T-A 11691520-T-A DYZ17 ***
13812234-A-C 11691528-A-C DYZ17 ***
13657035-C-T 11501359-C-T DYZ17 ***
13657036-A-AAATGG 11501360-A-AAATGG DYZ17 ***
13852238-A-G 11731532-A-G DYZ17 ***
13852239-A-G 11731533-A-G DYZ17 ***
58978466-C-G 56832319-C-G ***
13865939-C-G 11745233-C-G DYZ17 ***
13830239-G-A 11709533-G-A DYZ17 ***
13830241-T-C 11709535-T-C BY90856 DYZ17 ***
13658887-A-G 11503211-A-G DYZ17 ***
58975882-T-TCATTCCATTC 56829735-T-TCATTCCATTC ***
13852255-T-C 11731549-T-C DYZ17 ***
13810208-G-A 11689502-G-A DYZ17 ***
13833909-T-G 11713203-T-G DYZ17 ***
25441211-ATT-A,AT 23295064-ATT-A,AT P2_r2 22×T***
13454321-C-G 11298645-C-G BY30620 ***
13808789-G-C 11688083-G-C DYZ17 ***
13452978-C-A 11297302-C-A ***
13869565-G-C 11748859-G-C DYZ17 ***
13869209-G-C 11748503-G-C DYZ17 ***
27080520-G-GT 24934373-G-GT P1_r4 16×T***
13838532-G-A 11717826-G-A DYZ17 ***
22228064-A-G 20066178-A-G DYZ19 ***
13455536-C-CTCCAG 11299860-C-CTCCAG ***
13843402-T-G 11722696-T-G DYZ17 ***
13836415-C-A 11715709-C-A DYZ17 ***
13837341-G-T 11716635-G-T DYZ17 ***
13837350-C-T 11716644-C-T BY91021 DYZ17 ***
16157785-A-G 14045905-A-G P8_Dst ***
19436764-G-GAGAGAA 17324884-G-GAGAGAA 12×AGAA***
13479339-G-C 11323663-G-C ***
13479349-C-A 11323673-C-A ***
13479365-GATTTAC-G 11323689-GATTTAC-G ***
13862165-G-C 11741459-G-C DYZ17 ***
13862166-G-A 11741460-G-A DYZ17 ***
22230192-C-T 20068306-C-T DYZ19 ***
13862244-T-A 11741538-T-A DYZ17 ***
13810088-G-A 11689382-G-A DYZ17 ***
13810099-G-T 11689393-G-T DYZ17 ***
13810111-A-T 11689405-A-T DYZ17 ***
13458056-CTTTCA-C,CATTCC 11302380-CTTTCA-C,CATTCC ***
14116679-GATAC-G 11995973-GATAC-G 10×ATAC***
13858000-C-T 11737294-C-T DYZ17 ***
13657094-C-A 11501418-C-A DYZ17 ***
23899401-CGT-C,CTT 21737515-CGT-C,CTT 17×GT***
13862170-T-C,G 11741464-T-C,G DYZ17 ***
10024193-T-C 10186584-T-C ***
13833165-A-T 11712459-A-T DYZ17 ***
13479383-G-T 11323707-G-T ***
13657068-G-A 11501392-G-A DYZ17 ***
13657084-A-T 11501408-A-T DYZ17 ***
13657089-A-T 11501413-A-T DYZ17 ***
13657102-C-A 11501426-C-A DYZ17 ***
13864517-ACTCGC-A 11743811-ACTCGC-A DYZ17 ***
13813555-T-G 11692849-T-G DYZ17 ***
22147729-T-A 19985843-T-A ***
13837385-T-C 11716679-T-C DYZ17 ***
13459206-CATTCCAACTG-C 11303530-CATTCCAACTG-C ***
58972721-A-C 56826574-A-C ***
13479393-T-G 11323717-T-G ***
13479404-G-T 11323728-G-T ***
13866034-A-G 11745328-A-G DYZ17 ***
13480383-C-G 11324707-C-G ***
59004683-AG-A 56858536-AG-A ***
59004680-GAA-G 56858533-GAA-G ***
26564051-A-G 24417904-A-G P1_g2 ***
26538436-GTT-G 24392289-GTT-G P1_g2 17×T***
26152181-T-TTC 24006034-T-TTC P1_Y1 ***
26113917-T-G 23967770-T-G P1_Y1 ***
25319235-C-T 23173088-C-T P2_r1 ***
24956282-A-G 22810135-A-G g1 ***
24819804-T-TA 22673657-T-TA P3_b2 9×A***
24365177-A-AAGAGAT,T 22219030-A-AAGAGAT,T 8×AGAGAT***
22422248-G-C 20260362-G-C DYZ19 ***
22265491-G-A 20103605-G-A DYZ19 ***
22225916-G-C 20064030-G-C FGC20008 DYZ19 ***
20696739-TA-T 18534853-TA-T P4_Prx ***
20680521-C-T 18518635-C-T P4_Prx ***
19698347-G-A 17586467-G-A P5_Prx ***
19669154-A-G 17557274-A-G P5_Prx ***
18672379-T-TTTTA 16560499-T-TTTTA 8×TTTA***
16157779-GA-G 14045899-GA-G P8_Dst ***
13865906-C-A 11745200-C-A DYZ17 ***
13858560-G-GAAACT 11737854-G-GAAACT DYZ17 ***
13857886-G-A 11737180-G-A DYZ17 ***
13808724-G-GGAATGATACGGAATA 11688018-G-GGAATGATACGGAATA DYZ17 ***
13664621-A-ATGGAG 11508945-A-ATGGAG DYZ17 ***
13657095-A-G 11501419-A-G DYZ17 ***
13657081-C-T 11501405-C-T BY210665 DYZ17 ***
13479408-T-G 11323732-T-G ***
13455648-A-C,T 11299972-A-C,T ***
13451885-T-C 11296209-T-C ***
10019241-G-A 10181632-G-A BY83000 ***
13141094-GT-G 10630580-GT-G ***
13664424-A-C,G 11508748-A-C,G DYZ17 ***
22147730-CTTTCT-A,C 19985844-CTTTCT-A,C 19×TTTCT***
16157783-AG-A,AA 14045903-AG-A,AA P8_Dst ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.