Warren

FTDNA: 141787

Tree Position

R-U106/S21 > Z2265 > Z381/S263 > S264/Z156 > Z305 > Z307 > S265/Z304 > BY12480 > DF96 > ~18274596-G-A > FGC23197 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
141787
28206224-A-AT 26060077-A-AT P1_b4 9×T+
28206235-CT-C 26060088-CT-C P1_b4 8×T+
24071400-A-T 21925253-A-T L192ZS3955 P3_b1 +
14460909-C-T 12340182-C-T Y49559 YY+
15064733-C-T 12952825-C-T M8760 CTS3609 YY+
6331004-T-G 6462963-T-G IR3_Dst +
7768906-G-T 7900865-G-T BY67488 YY+
7810837-C-G 7942796-C-G BY67856 YY+
7887914-G-A 8019873-G-A BY68495 YY+
7995004-C-T 8126963-C-T BY69261 YY+
8165219-T-G 8297178-T-G BY70438 YY+
8555916-G-A 8687875-G-A BY73990 YY+
14609500-A-G 12497702-A-G BY96786 YY+
15003234-C-A 12891319-C-A BY99011 YY+
15071757-A-G 12959848-A-G BY99571 YY+
15908095-C-T 13796215-C-T BY104845 YY+
15980519-A-G 13868639-A-G BY105286 YY+
17960447-T-A 15848567-T-A FT181297 YY+
18221421-T-G 16109541-T-G BY120981 Y+
18893814-G-T 16781934-G-T BY124582 YY+
19093301-A-T 16981421-A-T BY126193 YY+
19125742-C-T 17013862-C-T BY126522 YY+
20811072-G-A 18649186-G-A BY212457 P4_Gap +
21228770-A-C 19066884-A-C BY131262 YY+
21660866-A-G 19498980-A-G BY134566 YY+
21938552-G-A 19776666-G-A BY136585 YY+
21984516-T-C 19822630-T-C BY136856 YY+
22200670-C-G 20038784-C-G Y57756 YY+
22239127-C-G 20077241-C-G BY213892 DYZ19 +
22483674-T-C 20321788-T-C BY224506 DYZ19 +
22689056-G-A 20527170-G-A BY140082 YY+
22764419-A-G 20602533-A-G BY140644 YY+
23063672-T-C 20901786-T-C BY225959 YY+
7204313-A-T 7336272-A-T YY*
14556181-T-G 12444382-T-G A9840 YY*
15866385-T-A 13754505-T-A A9841 YY*
15092687-G-T 12980776-G-T **
19997562-ATGTG-A 17885682-ATGTG-A P5_Prx 17×TG**
18118057-A-G 16006177-A-G **
16181467-C-T 14069587-C-T PR5718 **
3436252-G-A 3568211-G-A **
7137304-T-C 7269263-T-C Z1950 M2000 **
7137309-T-C 7269268-T-C PF221 **
15839888-C-G 13728008-C-G CTS4816 **
16095827-C-T 13983947-C-T CTS5260 **
3436256-G-A 3568215-G-A PR4339 FT74483 **
6744622-G-A 6876581-G-A **
9446106-G-T 9608497-G-T **
10024365-G-A 10186756-G-A **
14079996-T-A 11959290-T-A FT236493 **
20424412-T-G 18262526-T-G P5_Dst **
21880973-G-C 19719087-G-C **
22726887-A-T 20565001-A-T **
22726892-T-A 20565006-T-A **
22726894-TGC-T 20565008-TGC-T **
27718909-ATTCC-A 25572762-ATTCC-A P1_Y2 4×TTCC**
13664324-C-G 11508648-C-G ***
13664329-T-G 11508653-T-G ***
13857416-G-A 11736710-G-A ***
13868039-A-T 11747333-A-T ***
13447070-C-T 11291394-C-T ***
14624294-C-A 12512494-T-A ***
13521668-T-G 11365992-T-G ***
13851344-A-ATGGAC 11730638-A-ATGGAC ***
15810991-G-A 13699111-G-A ***
15811027-C-A 13699147-C-A ***
13141442-G-C 10630928-G-C ***
28800264-A-G 26654117-A-G ***
13818262-T-C 11697556-T-C ***
13839624-T-A 11718918-T-A ***
13447077-C-A 11291401-C-A ***
28785050-A-G 26638903-A-G ***
58972691-A-T 56826544-A-T ***
13858083-T-A 11737377-T-A ***
28787306-A-G 26641159-A-G ***
20288983-A-AG 18127097-A-AG P5_Dst ***
21112410-TACAC-T 18950524-TACAC-T 17×AC***
58980886-T-G 56834739-T-G ***
19226176-C-G 17114296-C-G Y74918 ***
9991635-A-AT 10154026-A-AT ***
9991637-C-A 10154028-C-A 20×T***
13681140-T-G 11525464-T-G ***
13828026-GGGATTGAATCGTATA-G 11707320-GGGATTGAATCGTATA-G ***
13681130-A-G 11525454-A-G ***
13138059-A-C,T 10627545-A-C,T ***
13838921-G-C 11718215-G-C ***
13838961-G-A 11718255-G-A ***
13838985-G-C 11718279-G-C ***
13838995-G-C 11718289-G-C ***
13838996-G-A 11718290-G-A ***
19226169-G-A 17114289-G-A ***
28806466-A-G 26660319-A-G ***
22997377-C-A 20835491-C-A ***
13858091-A-G 11737385-A-G FT20713 ***
7832170-C-CTCTTTCTT 7964129-C-CTCTTTCTT 12×TCTT***
13659320-T-C 11503644-T-C ***
13681126-A-G 11525450-A-G ***
58866115-C-T 56724756-G-A ***
13659282-T-A 11503606-T-A ***
22270575-A-G 20108689-A-G BY33360 DYZ19 ***
13331707-G-T 11176031-G-T ***
13869694-C-G 11748988-C-G ***
15426311-A-G 13314431-A-G PR1805 FT76418 ***
13659213-G-A 11503537-G-A ***
14637667-T-G 12525736-T-G ***
22508626-G-A 20346740-G-A DYZ19 ***
13194866-A-T 11039190-A-T ***
16514373-C-T 14402493-C-T ***
24947754-C-T 22801607-C-T g1 ***
13484423-T-A 11328747-T-A ***
16108870-C-T 13996990-C-T P8_Prx ***
13805994-G-C 11685288-G-C ***
58826833-C-T 56764038-G-A 9×CCATT***
58819386-T-A 56771485-A-T ***
3436226-G-T 3568185-G-T FT317217 ***
28801709-G-A 26655562-G-A BY151632 ***
13839345-G-T 11718639-G-T ***
58974072-A-T 56827925-A-T ***
13833809-C-T 11713103-C-T ***
3436225-T-A 3568184-T-A ***
13458782-A-T 11303106-A-T ***
13854387-GGAATCAAATGGAATT-G 11733681-GGAATCAAATGGAATT-G ***
20195017-CA-C 18033131-CA-C P5_Dst ***
58834089-ATTCCATTGGATTACT-A 56756759-GAATGGAAAGTAATCC-G ***
13858160-T-G 11737454-T-G ***
21642898-C-A 19481012-C-A PF6686 ***
13323594-A-T 11167918-A-T ***
13323647-AT-A 11167971-AT-A ***
13194849-C-G 11039173-C-G ***
24601759-GT-G 22455612-GT-G P3_t2 11×T***
59004463-A-AAAAGAAAGAAAGAAAG 56858316-A-AAAAGAAAGAAAGAAAG 15×AAAG***
13824290-A-T 11703584-A-T ***
24193828-ATGTG-A 22047681-ATGTG-A P3_b1 15×TG***
13842067-A-G 11721361-A-G ***
6119611-TTTGGCTTGTTATTA-G 6251570-TTTGGCTTGTTATTA-G ***
6191915-A-C 6323874-A-C IR3_Dst ***
8048543-A-T 8180502-A-T ***
8214827-T-A 8346786-T-A ***
13137311-G-C 10626797-G-C ***
13138044-C-T 10627530-C-T ***
13194802-G-C,T 11039126-G-C,T ***
13194827-T-C 11039151-T-C ***
13253951-C-G,T 11098275-C-G,T ***
13302268-AAGGTCAATATAC-T 11146592-AAGGTCAATATAC-T ***
13452761-C-T 11297085-C-T ***
13484447-G-T 11328771-G-T ***
13484470-T-G 11328794-T-G ***
13484471-A-G 11328795-A-G ***
13659301-G-C 11503625-G-C ***
13659307-T-G 11503631-T-G ***
13659314-G-C 11503638-G-C ***
13676242-C-G 11520566-C-G ***
13681139-G-T 11525463-G-T ***
13681170-A-G 11525494-A-G BY88226 ***
13681195-G-C 11525519-G-C ***
13686968-A-G 11531292-A-G ***
13728479-AGAATG-A 11572803-AGAATG-A 9×GAATG***
13813394-A-G 11692688-A-G ***
13813840-T-A 11693134-T-A ***
13817992-GGCAATGAATA-G,T 11697286-GGCAATGAATA-G,T ***
13868184-A-T 11747478-A-T ***
13868185-C-G 11747479-C-G 4×GAATG***
13869664-C-G 11748958-C-G ***
15459533-C-A 13347653-C-A ***
15811022-G-C 13699142-G-C ***
17364926-A-T 15253046-A-T ***
17364927-G-C 15253047-G-C ***
17841345-ACACAC-A 15729465-ACACAC-A ***
18639018-AGT-A,G 16527138-AGT-A,G 26×GT***
19226157-G-A 17114277-G-A ***
19226161-G-A 17114281-G-A ***
20027703-TTG-T 17915823-TTG-T P5_Prx ***
20195563-C-G 18033677-C-G P5_Dst ***
20288977-T-A 18127091-T-A P5_Dst ***
20740414-T-C 18578528-T-C P4_Prx ***
22278582-G-A 20116696-G-A DYZ19 ***
22292759-GATTC-G 20130873-GATTC-G DYZ19 ***
22304139-A-T 20142253-A-T DYZ19 ***
22316512-C-T 20154626-C-T DYZ19 ***
22336297-G-A 20174411-G-A DYZ19 ***
22360833-C-G 20198947-C-G DYZ19 ***
22369618-G-T 20207732-G-T DYZ19 ***
22369657-G-A 20207771-G-A DYZ19 ***
22369658-G-A 20207772-G-A DYZ19 ***
22369664-G-T 20207778-G-T Y57839 DYZ19 ***
22428302-CACTTAAAGACG-C 20266416-CACTTAAAGACG-C DYZ19 ***
22436918-T-A 20275032-T-A BY48898 DYZ19 ***
22437936-CAG-C 20276050-CAG-C DYZ19 ***
22451223-C-G 20289337-C-G DYZ19 ***
22453495-A-T 20291609-A-T DYZ19 ***
22510918-A-G 20349032-A-G DYZ19 ***
23558556-TCACA-T 21396670-TCACA-T 12×CA***
24032923-A-T 21886776-A-T ***
24032924-G-T 21886777-G-T ***
24032927-G-T 21886780-G-T ***
24034809-TGTTCCTCCACG-T 21888662-TGTTCCTCCACG-T ***
24267221-G-A 22121074-G-A P3_b1 ***
24709138-CTATGGCTGTAGCT-A 22562991-CTATGGCTGTAGCT-A P3_b2 ***
25240239-CTTTT-C 23094092-CTTTT-C P2_r1 22×T***
25410936-GGTTTA-G 23264789-GGTTTA-G P2_r2 ***
27427551-T-C 25281404-T-C P1_g3 ***
58819393-C-G 56771478-G-C ***
58831240-ACAGTCT-A 56759624-TAGACTG-T ***
13821177-A-AGGAAA,T 11700471-A-AGGAAA,T 10×GGAAT***
13458776-CTGTTG-A,C 11303100-CTGTTG-A,C ***
13866055-C-A,G 11745349-C-A,G ***
16157783-AG-A,AA 14045903-AG-A,AA P8_Dst ***
13686962-GCACCC-G,GGACCC 11531286-GCACCC-G,GGACCC ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.