Calhoun

FGC: ELV7F, FTDNA: N112723
MDKA Birth: Ireland 1688

Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z46375 > DF106 > DF104 > DF105 > ZZ87 > DF85 > S673 > S668 > DF97 > ZZ36 > FGC19851 > BY3346 > FGC19846 > FGC42106 > FGC42486

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
ELV7F
17219554-T-C 15107674-T-C FGC42487 Y+
9103312-T-C 9265703-T-C FGC42485 Y+
28572802-A-T 26426655-A-T FGC42492 +
18777245-C-T 16665365-C-T FGC42488 YY+
8013135-C-T 8145094-C-T FGC42484 YY+
19120699-C-T 17008819-C-T FGC42489 YY+
6513164-G-C 6645123-G-C FGC42483 +
9430570-T-A 9592961-T-A **
7211151-T-C 7343110-T-C PH534 **
23096077-G-C 20934191-G-C **
17822683-G-A 15710803-G-A **
22543763-C-T 20381877-C-T **
3377241-G-T 3509200-G-T **
18542524-A-G 16430644-A-G **
13811067-A-AGGAATGGAAT 11690361-A-AGGAATGGAAT 11×GGAAT**
5002837-C-T 5134796-C-T **
5898692-A-G 6030651-A-G **
17856456-T-C 15744576-T-C **
13478963-G-A 11323287-G-A **
6473203-C-A 6605162-C-A **
22016939-TG-T 19855053-TG-T **
7023688-C-A 7155647-C-A **
17060211-C-A 14948331-C-A **
17060196-C-T 14948316-C-T **
25370909-T-C 23224762-T-C P2_r2 **
7211340-T-G 7343299-T-G Y61701 **
8006188-G-A 8138147-G-A **
15120716-A-T 13008803-A-T **
27593148-C-A 25447001-C-A P1_Y2 **
13852275-T-C 11731569-T-C **
13349409-G-C 11193733-G-C **
13349425-T-A 11193749-T-A **
21575915-TG-T 19414029-TG-T **
3613304-C-T 3745263-C-T **
8565786-A-AT 8697745-A-AT 10×T**
26834786-AAG-A 24688639-AAG-A P1_g2 **
58880431-A-T 56710440-T-A **
8246972-C-CT 8378931-C-CT Z17267 9×T**
13377774-T-C 11222098-T-C **
59021928-G-GTTTT 56875781-G-GTTTT 9×T**
7211162-T-G 7343121-T-G Z14414 **
7211211-A-C 7343170-A-C Z27794 **
21744840-C-T 19582954-C-T **
22234675-T-A 20072789-T-A DYZ19 ***
25351933-G-C 23205786-G-C P2_r1 ***
22249376-C-T 20087490-C-T DYZ19 ***
25629726-C-T 23483579-C-T P1_b3 ***
25628564-T-A 23482417-T-A P1_b3 ***
26676689-G-T 24530542-G-T P1_g2 ***
25609766-G-A 23463619-G-A P1_gr1 ***
22266050-T-G 20104164-T-G DYZ19 ***
25577333-T-G 23431186-T-G P1_gr1 ***
25505196-A-G 23359049-A-G P1_gr1 ***
25429300-G-T 23283153-G-T P2_r2 ***
22295919-C-G 20134033-C-G DYZ19 ***
22297259-C-T 20135373-C-T DYZ19 ***
25633487-G-T 23487340-G-T P1_b3 ***
26713713-C-T 24567566-C-T P1_g2 ***
22311236-G-T 20149350-G-T DYZ19 ***
25311658-C-T 23165511-C-T P2_r1 ***
22311283-A-T 20149397-A-T DYZ19 ***
26713715-C-T 24567568-C-T P1_g2 ***
22311284-G-A 20149398-G-A DYZ19 ***
26777649-G-A 24631502-G-A P1_g2 ***
25273967-T-C 23127820-T-C P2_r1 ***
25256541-C-T 23110394-C-T P2_r1 ***
25246616-A-T 23100469-A-T P2_r1 ***
25241550-G-C 23095403-G-C P2_r1 ***
22249364-C-T 20087478-C-T DYZ19 ***
25730963-C-A 23584816-C-A P1_b3 ***
26547477-C-A 24401330-C-A P1_g2 ***
26613936-T-G 24467789-T-G P1_g2 ***
26343444-C-T 24197297-C-T P1_Y1 ***
26310925-A-T 24164778-A-T P1_Y1 ***
26310770-G-T 24164623-G-T P1_Y1 ***
26299057-G-T 24152910-G-T P1_Y1 ***
26263333-A-T 24117186-A-T P1_Y1 ***
26207535-T-C 24061388-T-C P1_Y1 ***
26570661-C-A 24424514-C-A P1_g2 ***
26207475-C-A 24061328-C-A P1_Y1 ***
22234677-T-A 20072791-T-A DYZ19 ***
26171196-A-C 24025049-A-C P1_Y1 ***
22234690-T-A 20072804-T-A DYZ19 ***
25736562-T-C 23590415-T-C P1_b3 ***
26171125-A-G 24024978-A-G P1_Y1 ***
26127770-G-C 23981623-G-C P1_Y1 ***
26101124-T-G 23954977-T-G P1_Y1 ***
26066419-G-T 23920272-G-T P1_Y1 ***
26060039-T-A 23913892-T-A P1_Y1 ***
26047626-A-T 23901479-A-T P1_Y1 ***
25990704-G-T 23844557-G-T P1_Y1 ***
25939309-C-A 23793162-C-A P1_Y1 ***
25241047-A-C 23094900-A-C P2_r1 ***
25886181-C-A 23740034-C-A P1_Y1 12×A***
22234785-T-A 20072899-T-A DYZ19 ***
22234692-T-C 20072806-T-C DYZ19 ***
22364455-A-C 20202569-A-C DYZ19 ***
22341436-G-T 20179550-G-T DYZ19 ***
22503626-G-A 20341740-G-A DYZ19 ***
24096533-G-T 21950386-G-T P3_b1 ***
24094803-T-C 21948656-T-C P3_b1 ***
22357658-G-A 20195772-G-A DYZ19 ***
24037332-G-T 21891185-G-T ***
23569770-A-C 21407884-A-C ***
23425299-A-T 21263413-A-T ***
23332506-T-C 21170620-T-C ***
23106506-A-T 20944620-A-T ***
23038744-G-A 20876858-G-A ***
22777583-T-A 20615697-T-A ***
22620702-T-C 20458816-T-C ***
22503684-T-C 20341798-T-C DYZ19 ***
22502676-T-C 20340790-T-C DYZ19 ***
24142893-A-G 21996746-A-G P3_b1 ***
22502467-A-T 20340581-A-T DYZ19 ***
22495643-C-G 20333757-C-G DYZ19 ***
22495631-T-G 20333745-T-G DYZ19 ***
22481231-G-A 20319345-G-A DYZ19 ***
22453452-G-C 20291566-G-C DYZ19 ***
22450410-A-T 20288524-A-T DYZ19 ***
22359961-A-C 20198075-A-C DYZ19 ***
22450170-G-T 20288284-G-T DYZ19 ***
22367351-G-T 20205465-G-T DYZ19 ***
22366094-G-A 20204208-G-A DYZ19 ***
22364831-G-T 20202945-G-T DYZ19 ***
22364485-C-A 20202599-C-A DYZ19 ***
24113328-T-C 21967181-T-C P3_b1 ***
22357174-C-A 20195288-C-A DYZ19 ***
22341549-C-A 20179663-C-A DYZ19 ***
24663583-A-C 22517436-A-C P3_b2 ***
25207814-C-A 23061667-C-A P2_r1 ***
25207704-T-A 23061557-T-A P2_r1 ***
25147165-C-T 23001018-C-T g1 ***
24998129-T-C 22851982-T-C g1 ***
24998068-A-C 22851921-A-C g1 ***
24997364-G-A 22851217-G-A g1 ***
24960163-T-C 22814016-T-C g1 ***
22341949-T-A 20180063-T-A DYZ19 ***
24910157-A-T 22764010-A-T g1 ***
24908329-C-A 22762182-C-A g1 ***
24906812-C-A 22760665-C-A g1 ***
24726369-T-G 22580222-T-G P3_b2 ***
24646626-G-T 22500479-G-T P3_b2 ***
24208056-A-G 22061909-A-G P3_b1 ***
24620006-G-T 22473859-G-T P3_t2 ***
24573789-C-G 22427642-C-G P3_t2 ***
26983829-T-G 24837682-T-G P1_r4 ***
24572691-A-C 22426544-A-C P3_t2 ***
22344636-G-C 20182750-G-C DYZ19 ***
24283190-C-A 22137043-C-A P3_t1 ***
22356797-G-T 20194911-G-T DYZ19 ***
24274760-A-G 22128613-A-G P3_b1 ***
24273680-G-T 22127533-G-T P3_b1 ***
22356835-A-C 20194949-A-C DYZ19 ***
24264921-T-C 22118774-T-C P3_b1 ***
24245046-G-T 22098899-G-T P3_b1 ***
58908899-C-G 56681972-G-C ***
27436411-T-G 25290264-T-G P1_Y2 ***
27077146-G-T 24930999-G-T P1_r4 ***
13487703-CGTC-AGTG 11332027-CGTC-AGTG ***
16809482-T-TAGAG 14697602-T-TAGAG ***
16344419-C-CTTCTTT 14232539-C-CTTCTTT ***
16344408-T-TTCCTCC 14232528-T-TTCCTCC ***
16262669-AT-A 14150789-AT-A 10×T***
15683627-TCAAA-T 13571747-TCAAA-T ***
15047301-T-TG 12935392-T-TG ***
14825837-TTTTTTG-T 12713904-TTTTTTG-T ***
14083957-G-GATAGATAT 11963251-G-GATAGATAT ***
14026947-A-ATCTATCTT 11906241-A-ATCTATCTT ***
13661298-A-ATGGAT 11505622-A-ATGGAT ***
13489680-CC-TT 11334004-CC-TT ***
13487814-CAG-TTA 11332138-CAG-TTA ***
13487724-AG-GC 11332048-AG-GC ***
13478040-CT-TC 11322364-CT-TC ***
17196756-A-AAAGG 15084876-A-AAAGG ***
13459268-T-TGCCACTCCAC 11303592-T-TGCCACTCCAC ***
13453840-C-CTCCAT 11298164-C-CTCCAT 10×TCCAT***
13453480-A-ATTCCT 11297804-A-ATTCCT ***
13453470-A-ATTCCT 11297794-A-ATTCCT ***
13453465-A-ATTCCC 11297789-A-ATTCCC ***
13453460-A-ATTCCT 11297784-A-ATTCCT ***
13453455-A-ATTCCC 11297779-A-ATTCCC ***
13256858-GTTT-G 11101182-GTTT-G 18×T***
13253199-GT-G 11097523-GT-G 14×T***
13199166-A-AAAAAACAAC 11043490-A-AAAAAACAAC ***
13141810-A-ATTCCC 10631296-A-ATTCCC ***
7211307-T-TC 7343266-T-TC ***
7211288-TG-CA 7343247-TG-CA ***
17060092-CT-C 14948212-CT-C ***
17459484-GCAA-G 15347604-GCAA-G ***
6489371-CAAAAAA-C 6621330-CAAAAAA-C 25×A***
22366093-TG-AA 20204207-TG-AA DYZ19 ***
58908796-AGTCC-GGTAA 56682071-GGACT-TTACC ***
26834784-GAA-G 24688637-GAA-G P1_g2 ***
26563185-TACACAC-T 24417038-TACACAC-T P1_g2 15×AC***
25802525-TA-T 23656378-TA-T P1_b3 ***
25201091-A-AAGG 23054944-A-AAGG g1 15×AAGG***
24710109-T-TATC 22563962-T-TATC P3_b2 ***
24646623-GTTG-TTTT 22500476-GTTG-TTTT P3_b2 ***
24386994-A-ATATATATATATCTCCTATATATATCC 22240847-A-ATATATATATATCTCCTATATATATCC ***
24107663-CAAAAAAAAA-C 21961516-CAAAAAAAAA-C P3_b1 18×A***
23438974-GCCT-CCCC 21277088-GCCT-CCCC ***
23293594-GTGTGTATA-G 21131708-GTGTGTATA-G ***
22502297-T-TA 20340411-T-TA DYZ19 ***
22502170-CG-TT 20340284-CG-TT DYZ19 ***
22356758-TGG-GGT 20194872-TGG-GGT DYZ19 ***
17662010-ATGTGTGTG-A 15550130-ATGTGTGTG-A 21×TG***
22344635-GG-C 20182749-GG-C DYZ19 ***
22341971-AGATC-TCTTA 20180085-AGATC-TCTTA DYZ19 ***
22311283-AGT-TAC 20149397-AGT-TAC DYZ19 ***
22309825-AGTC-TGTG 20147939-AGTC-TGTG DYZ19 ***
22266050-TGTTG-GGTTA 20104164-TGTTG-GGTTA DYZ19 ***
22229540-TGAAGGAAT-AGATAGAAC 20067654-TGAAGGAAT-AGATAGAAC DYZ19 ***
22228015-GA-TT 20066129-GA-TT DYZ19 ***
22227979-CTG-TTC 20066093-CTG-TTC DYZ19 ***
22226486-CC-A 20064600-CC-A DYZ19 ***
22085145-CTCAG-TTCAC 19923259-CTCAG-TTCAC ***
21464193-A-AAAGG 19302307-A-AAAGG ***
21386194-A-ATATT 19224308-A-ATATT ***
20842516-GGGAAAGAA-G 18680630-GGGAAAGAA-G P4_Dst ***
7211280-CTGC-GTGG 7343239-CTGC-GTGG ***
5913745-T-TAGCATTATATTATAAGCACTTACACTGTTATTAAATAATTAAAAAAATAACTTTCAA 6045704-T-TAGCATTATATTATAAGCACTTACACTGTTATTAAATAATTAAAAAAATAACTTTCAA ***
27088211-C-A 24942064-C-A P1_r4 ***
27561251-C-A 25415104-C-A P1_Y2 ***
28007879-C-A 25861732-C-A P1_Y2 ***
27991218-A-G 25845071-A-G P1_Y2 ***
27971563-T-A 25825416-T-A P1_Y2 ***
27915776-C-A 25769629-C-A P1_Y2 ***
27861070-A-T 25714923-A-T P1_Y2 ***
27860258-G-T 25714111-G-T P1_Y2 ***
27733882-C-A 25587735-C-A P1_Y2 ***
27733619-T-G 25587472-T-G P1_Y2 ***
27733293-C-A 25587146-C-A P1_Y2 ***
27651778-C-A 25505631-C-A P1_Y2 27×A***
27615985-T-C 25469838-T-C P1_Y2 ***
27608905-T-A 25462758-T-A P1_Y2 ***
27608505-G-T 25462358-G-T P1_Y2 ***
27553583-C-A 25407436-C-A P1_Y2 ***
28090036-A-G 25943889-A-G P1_Y2 ***
27528986-C-A 25382839-C-A P1_Y2 ***
27436498-C-A 25290351-C-A P1_Y2 ***
27436421-C-A 25290274-C-A P1_Y2 ***
22234661-C-G 20072775-C-G DYZ19 ***
27327854-T-G 25181707-T-G P1_g3 ***
27319753-G-T 25173606-G-T P1_g3 ***
27288892-C-T 25142745-C-T P1_g3 ***
27286655-C-T 25140508-C-T P1_g3 ***
27286480-C-A 25140333-C-A P1_g3 ***
27264181-C-T 25118034-C-T P1_g3 ***
27228901-A-C 25082754-A-C P1_g3 ***
27202402-G-T 25056255-G-T P1_g3 ***
27088421-C-G 24942274-C-G P1_r4 ***
28020099-A-C 25873952-A-C P1_Y2 ***
28096371-G-T 25950224-G-T P1_Y2 ***
13485502-GT-AC 11329826-GT-AC ***
58853276-G-T 56737595-C-A ***
13478076-TGCA-CGCG 11322400-TGCA-CGCG ***
22297120-CCATCT-ACTTCA 20135234-CCATCT-ACTTCA DYZ19 ***
3544895-G-GT 3676854-G-GT ***
58914851-T-C 56676020-A-G ***
58909577-T-A 56681294-A-T ***
58905821-G-T 56685050-C-A ***
58905527-A-C 56685344-T-G ***
58893602-T-C 56697269-A-G ***
58888585-C-A 56702286-G-T ***
58887697-A-T 56703174-T-A ***
58882953-C-T 56707918-G-A ***
58869517-A-T 56721354-T-A ***
58867548-G-T 56723323-C-A ***
58847007-G-C 56743864-C-G ***
28117262-A-T 25971115-A-T P1_b4 ***
58845197-T-C 56745674-A-G ***
58845166-G-C 56745705-C-G ***
58843321-A-G 56747550-T-C ***
58838427-T-A 56752444-A-T ***
58837958-A-G 56752913-T-C ***
58828380-G-T 56762491-C-A ***
58823036-C-A 56767835-G-T ***
28749745-G-A 26603598-G-A ***
28628430-A-T 26482283-A-T ***
28486633-G-A 26340486-G-A ***
28411608-T-C 26265461-T-C P1_gr2 ***
28253346-G-A 26107199-G-A P1_b4 ***
28228666-G-T 26082519-G-T P1_b4 ***
28219578-G-T 26073431-G-T P1_b4 ***
22234671-A-G 20072785-A-G DYZ19 ***
22085135-C-G 19923249-C-G ***
22234570-A-G 20072684-A-G DYZ19 ***
5283428-G-T 5415387-G-T ***
7123504-G-T 7255463-G-T ***
6688244-C-A 6820203-C-A ***
6394743-G-C 6526702-G-C ***
6342579-G-T 6474538-G-T ***
6252896-T-G 6384855-T-G IR3_Dst ***
6241684-C-A 6373643-C-A IR3_Dst ***
6228700-G-T 6360659-G-T IR3_Dst ***
6156026-T-C 6287985-T-C IR3_Dst ***
5960734-A-T 6092693-A-T ***
5812343-C-T 5944302-C-T ***
5809520-C-T 5941479-C-T ***
5349078-C-G 5481037-C-G ***
5241304-T-C 5373263-T-C ***
7211245-C-T 7343204-C-T Y61700 ***
5224749-C-A 5356708-C-A ***
5050777-G-C 5182736-G-C ***
4634481-C-A 4766440-C-A ***
4577252-A-G 4709211-A-G ***
4144890-C-T 4276849-C-T ***
4099580-C-A 4231539-C-A ***
4089803-G-A 4221762-G-A ***
3875760-G-T 4007719-G-T ***
3865153-G-A 3997112-G-A ***
3729470-G-T 3861429-G-T ***
3561500-C-A 3693459-C-A 25×A***
3561499-T-A 3693458-T-A ***
3374841-C-A 3506800-C-A ***
7141833-A-C 7273792-A-C ***
7211269-A-G 7343228-A-G Y37420 ***
3207471-G-A 3339430-G-A ***
9409475-A-T 9571866-A-T ***
13262128-T-A 11106452-T-A ***
13258359-A-C 11102683-A-C 9×T***
10091407-C-T 10253798-C-T ***
10076632-T-A 10239023-T-A ***
10038112-G-T 10200503-G-T ***
10014965-T-G 10177356-T-G ***
9921743-G-T 10084134-G-T ***
9913002-C-A 10075393-C-A ***
9799514-A-C 9961905-A-C ***
9682935-C-G 9845326-C-G IR3_Prx ***
9557771-T-C 9720162-T-C IR3_Prx ***
9430390-C-A 9592781-C-A ***
9409553-A-G 9571944-A-G ***
9369348-A-T 9531739-A-T ***
7211280-C-G 7343239-C-G ***
9349161-G-A 9511552-G-A ***
9345440-A-T 9507831-A-T ***
9295929-C-A 9458320-C-A ***
8964962-G-T 9127353-G-T ***
8369806-T-C 8501765-T-C ***
8066048-A-G 8198007-A-G ***
8003018-T-C 8134977-T-C ***
7633096-C-A 7765055-C-A ***
7443238-A-G 7575197-A-G ***
7211294-T-C 7343253-T-C ***
7211289-G-A 7343248-G-A ***
7211288-T-C 7343247-T-C ***
7211283-C-G 7343242-C-G ***
3335803-C-T 3467762-C-T ***
3207459-G-T 3339418-G-T ***
13341500-T-G 11185824-T-G ***
20333803-G-A 18171917-G-A P5_Dst ***
22258117-A-G 20096231-A-G DYZ19 ***
22309703-C-G 20147817-C-G DYZ19 ***
58971310-T-C 56825163-T-C ***
13489395-C-T 11333719-C-T ***
58860799-T-C 56730072-A-G ***
22356801-G-C 20194915-G-C DYZ19 ***
58905820-T-A 56685051-A-T FGC81074 ***
14191885-G-A 12071179-G-A ***
19309422-C-CAT 17197542-C-CAT 19×AT***
16290810-TATAA-T 14178930-TATAA-T ***
14842428-TG-T 12730494-TG-T ***
13271775-TAAAAAA-T 11116099-TAAAAAA-T 12×A***
22435751-T-C 20273865-T-C DYZ19 ***
58869463-T-C 56721408-A-G ***
22364435-G-C 20202549-G-C DYZ19 ***
22234799-T-C 20072913-T-C DYZ19 ***
22266085-G-T 20104199-G-T DYZ19 ***
22481323-A-T 20319437-A-T DYZ19 ***
22502630-T-G 20340744-T-G DYZ19 ***
13252783-G-T 11097107-G-T 11×T***
27162020-T-TA 25015873-T-TA P1_g3 18×A***
22446105-TAC-ACT 20284219-TAC-ACT DYZ19 ***
21227375-C-CTT 19065489-C-CTT 22×T***
13254792-A-C 11099116-A-C ***
22234658-T-C 20072772-T-C DYZ19 ***
22223279-G-C 20061393-G-C DYZ19 ***
13254790-C-G 11099114-C-G ***
58860497-C-A 56730374-G-T FGC42760 FGC77919 ***
13459250-CCAT-TCAA 11303574-CCAT-TCAA ***
3143096-A-T 3275055-A-T ***
13485537-TATGTC-CGTGTA 11329861-TATGTC-CGTGTA ***
2698208-C-T 2830167-C-T ***
22498933-C-G 20337047-C-G DYZ19 ***
58988415-T-C 56842268-T-C ***
13473712-T-G 11318036-T-G ***
22480746-T-G 20318860-T-G DYZ19 ***
22480747-C-T 20318861-C-T DYZ19 ***
13132898-T-G 10622384-T-G ***
22355035-C-T 20193149-C-T DYZ19 ***
24389730-G-T 22243583-G-T ***
5785641-T-A 5917600-T-A ***
22229496-A-G 20067610-A-G DYZ19 ***
13461103-A-C 11305427-A-C ***
22356768-CATA-GATG 20194882-CATA-GATG DYZ19 ***
22349332-T-G 20187446-T-G DYZ19 ***
58869371-G-C 56721500-C-G ***
22320686-A-G 20158800-A-G DYZ19 ***
19845946-C-T 17734066-C-T P5_Prx ***
13223221-T-G 11067545-T-G ***
13737187-C-G 11581511-C-G ***
58899845-C-G 56691026-G-C ***
14937873-C-CTTTTCTTTTT 12825948-C-CTTTTCTTTTT ***
58829858-C-T 56761013-G-A ***
26713747-C-A 24567600-C-A P1_g2 ***
22249347-T-C 20087461-T-C DYZ19 ***
22238435-C-T 20076549-C-T DYZ19 ***
22502177-GTGAA-TTGAG 20340291-GTGAA-TTGAG DYZ19 ***
7545013-G-GC 7676972-G-GC ***
26713789-C-A 24567642-C-A P1_g2 ***
13329246-C-T 11173570-C-T ***
13344752-C-G 11189076-C-G ***
22234569-T-A 20072683-T-A DYZ19 ***
19769515-G-A 17657635-G-A P5_Prx ***
20646225-T-A 18484339-T-A P4_Prx ***
20511023-A-T 18349137-A-T P5_Dst ***
20500916-T-C 18339030-T-C P5_Dst ***
20363850-A-T 18201964-A-T P5_Dst ***
20335535-G-T 18173649-G-T P5_Dst ***
20326250-C-T 18164364-C-T P5_Dst ***
20326184-C-A 18164298-C-A P5_Dst ***
20084647-G-T 17972767-G-T P5_Dst ***
19997247-G-T 17885367-G-T P5_Prx ***
19937319-C-T 17825439-C-T P5_Prx ***
19853623-T-A 17741743-T-A P5_Prx ***
19845814-T-A 17733934-T-A P5_Prx ***
19741185-A-C 17629305-A-C P5_Prx ***
20723677-A-T 18561791-A-T P4_Prx ***
19740976-T-C 17629096-T-C P5_Prx ***
19710004-C-A 17598124-C-A P5_Prx ***
19708888-A-G 17597008-A-G P5_Prx ***
19663133-T-C 17551253-T-C P5_Prx ***
19604653-G-T 17492773-G-T P5_Prx ***
19325766-G-T 17213886-G-T ***
19206689-T-A 17094809-T-A ***
19203957-T-A 17092077-T-A ***
19132396-A-C 17020516-A-C ***
18975355-A-C 16863475-A-C ***
18844437-A-G 16732557-A-G ***
18544599-G-C 16432719-G-C ***
18521774-T-C 16409894-T-C P6_Dst ***
20697777-C-T 18535891-C-T P4_Prx ***
20771676-G-T 18609790-G-T P4_Prx ***
18447451-C-T 16335571-C-T P6_Dst ***
22085163-G-A 19923277-G-A ***
22231833-T-C 20069947-T-C DYZ19 ***
22228016-A-T 20066130-A-T DYZ19 ***
22228015-G-T 20066129-G-T DYZ19 ***
22228000-A-G 20066114-A-G DYZ19 ***
22227991-A-G 20066105-A-G DYZ19 ***
22227981-G-C 20066095-G-C DYZ19 ***
22226817-C-T 20064931-C-T DYZ19 ***
22226808-G-A 20064922-G-A DYZ19 ***
22226805-A-T 20064919-A-T DYZ19 ***
22226425-A-C 20064539-A-C DYZ19 ***
22223993-T-G 20062107-T-G DYZ19 ***
22085396-C-A 19923510-C-A ***
22085185-G-A 19923299-G-A ***
22085149-G-C 19923263-G-C ***
20783960-G-T 18622074-G-T P4_Prx ***
22085145-C-T 19923259-C-T ***
22014167-T-A 19852281-T-A ***
21999839-G-T 19837953-G-T ***
21997689-A-G 19835803-A-G ***
21955594-C-A 19793708-C-A ***
21942507-A-G 19780621-A-G ***
21886637-C-A 19724751-C-A ***
21789926-C-T 19628040-C-T ***
21448703-A-T 19286817-A-T ***
21448520-A-G 19286634-A-G ***
21387074-G-T 19225188-G-T ***
21213066-G-T 19051180-G-T ***
20894772-G-A 18732886-G-A P4_Dst ***
18469295-G-A 16357415-G-A P6_Dst ***
18447431-A-T 16335551-A-T P6_Dst ***
13375905-T-A 11220229-T-A ***
13489397-T-C 11333721-T-C ***
14182327-G-A 12061621-G-A 8×A***
14163068-T-C 12042362-T-C ***
14163047-G-A 12042341-G-A ***
14134633-A-C 12013927-A-C ***
13875947-A-C 11755241-A-C ***
13873113-T-A 11752407-T-A ***
13804696-G-T 11683990-G-T ***
13746297-C-A 11590621-C-A ***
13742681-T-C 11587005-T-C ***
13742634-T-G 11586958-T-G ***
13601966-T-G 11446290-T-G ***
13489403-T-A 11333727-T-A ***
13488664-C-A 11332988-C-A ***
14307053-G-C 12186347-G-C ***
13488661-C-G 11332985-C-G ***
13488589-G-A 11332913-G-A ***
13488550-C-T 11332874-C-T ***
13488543-C-T 11332867-C-T ***
13488500-A-G 11332824-A-G ***
13488492-C-T 11332816-C-T ***
13488137-C-A 11332461-C-A ***
13487826-C-A 11332150-C-A ***
13478033-G-T 11322357-G-T ***
13461096-G-T 11305420-G-T ***
13458914-C-T 11303238-C-T ***
13393377-T-G 11237701-T-G ***
13379609-T-C 11223933-T-C ***
14271885-A-G 12151179-A-G ***
15047848-C-T 12935939-C-T ***
18411485-A-C 16299605-A-C P6_Gap ***
17568081-C-T 15456201-C-T ***
18380831-G-T 16268951-G-T P6_Prx ***
18352885-G-A 16241005-G-A P6_Prx ***
18317461-T-A 16205581-T-A P6_Prx 15×A***
18288114-G-C 16176234-G-C P6_Prx ***
18285674-C-A 16173794-C-A P6_Prx ***
18283325-G-T 16171445-G-T P6_Prx ***
18140722-G-T 16028842-G-T ***
18132861-T-C 16020981-T-C ***
18119961-C-A 16008081-C-A ***
17987567-G-T 15875687-G-T P7_Prx ***
17933029-A-T 15821149-A-T ***
17797520-A-G 15685640-A-G ***
17694657-G-A 15582777-G-A ***
17543826-T-A 15431946-T-A ***
15142193-G-T 13030280-G-T ***
17432669-T-C 15320789-T-C ***
17218859-T-C 15106979-T-C ***
16997863-G-T 14885983-G-T ***
16987200-C-A 14875320-C-A 11×A***
16738979-G-T 14627099-G-T ***
16266338-T-G 14154458-T-G ***
16214948-C-A 14103068-C-A ***
16141651-A-T 14029771-A-T P8_Dst ***
15937085-C-T 13825205-C-T ***
15856749-C-A 13744869-C-A ***
15480102-T-C 13368222-T-C ***
15295675-A-T 13183774-A-T ***
15294949-G-A 13183048-G-A ***
58975128-ATCCAT-A 56828981-ATCCAT-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Calhoun1325141111-12121212131429179-1012112515183015-15-16-18111019-231516181738-40121211915-1681010810101221-231610121217812252013121113111112123515916122426191211121211913121011113012132413101021151912241613152412231810151791211

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: ELV7F*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs44
Variant counts last updated 2020-02-01 03:13:00.

* BED data not available. Using default values.

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