Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > 22259639-T-C > FGC5780 > L658 > FGC5757 > FGC5787 > FGC5766 > FGC5767

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
LTKMM
17630784-T-A 15518904-T-A FGC42693 YY+
22484356-G-A 20322470-G-A FGC42694 DYZ19 +
13294509-GTT-G 11138833-GTT-G 12×T**
21998161-C-A 19836275-C-A **
7299464-C-G 7431423-C-G **
2698570-G-T 2830529-G-T **
16322303-A-G 14210423-A-G **
16319323-C-A 14207443-C-A **
18134160-T-C 16022280-T-C **
13328938-C-T 11173262-C-T **
13262630-C-T 11106954-C-T **
13311087-C-T 11155411-C-T **
10095265-T-A 10257656-T-A **
13260262-T-C 11104586-T-C **
13260296-T-G 11104620-T-G **
59000130-T-C 56853983-T-C **
6091720-ATTTTTT-A 6223679-ATTTTTT-A 28×T**
7024864-GT-G 7156823-GT-G **
7299442-AG-A 7431401-AG-A **
14273897-G-A 12153191-G-A **
16796710-G-C 14684830-G-C **
28432601-GT-G 26286454-GT-G P1_gr2 **
17162179-C-T 15050299-C-T **
13470711-G-T 11315035-G-T **
5769948-C-T 5901907-C-T **
17304689-C-CAGATAGATAGAT 15192809-C-CAGATAGATAGAT 11×AGAT**
19177555-C-A 17065675-C-A **
22267245-T-A 20105359-T-A DYZ19 **
6626671-T-A 6758630-T-A **
22358295-C-G 20196409-C-G DYZ19 ***
22358279-A-C 20196393-A-C DYZ19 ***
24164847-T-A 22018700-T-A P3_b1 ***
24595421-C-T 22449274-C-T P3_t2 ***
24387378-A-T 22241231-A-T ***
24314810-C-A 22168663-C-A P3_t1 ***
24667521-C-A 22521374-C-A P3_b2 ***
24182975-T-C 22036828-T-C P3_b1 ***
22358837-C-T 20196951-C-T DYZ19 ***
24595552-G-A 22449405-G-A P3_t2 ***
22547620-G-T 20385734-G-T ***
24163281-A-T 22017134-A-T P3_b1 ***
22849521-T-G 20687635-T-G ***
24106872-G-A 21960725-G-A P3_b1 ***
22360777-C-A 20198891-C-A DYZ19 ***
22366844-G-A 20204958-G-A DYZ19 ***
22491501-C-A 20329615-C-A DYZ19 ***
22500006-T-G 20338120-T-G DYZ19 ***
23838371-G-T 21676485-G-T ***
22502897-C-T 20341011-C-T DYZ19 ***
23231003-A-G 21069117-A-G ***
22503216-T-G 20341330-T-G DYZ19 ***
23182253-G-A 21020367-G-A ***
23106716-G-T 20944830-G-T ***
23038821-G-C 20876935-G-C ***
24695856-A-C 22549709-A-C P3_b2 ***
25231621-G-A 23085474-G-A P2_r1 ***
24708436-G-A 22562289-G-A P3_b2 ***
25717443-G-A 23571296-G-A P1_b3 ***
25605604-G-C 23459457-G-C P1_gr1 ***
25605769-G-A 23459622-G-A P1_gr1 ***
25626307-T-C 23480160-T-C P1_b3 ***
25626367-G-C 23480220-G-C P1_b3 ***
25626762-T-G 23480615-T-G P1_b3 ***
25714879-G-T 23568732-G-T P1_b3 ***
25717432-T-A 23571285-T-A P1_b3 ***
25767158-T-C 23621011-T-C P1_b3 ***
25561402-T-C 23415255-T-C P1_gr1 ***
25807294-C-A 23661147-C-A P1_b3 ***
25840424-C-A 23694277-C-A P1_b3 ***
25927928-C-T 23781781-C-T P1_Y1 ***
25954651-G-A 23808504-G-A P1_Y1 ***
25998287-G-T 23852140-G-T P1_Y1 ***
26009873-T-G 23863726-T-G P1_Y1 ***
26065724-T-G 23919577-T-G P1_Y1 ***
25604983-T-A 23458836-T-A P1_gr1 ***
25552403-G-T 23406256-G-T P1_gr1 ***
24710071-T-C 22563924-T-C P3_b2 ***
25303790-T-G 23157643-T-G P2_r1 ***
24730300-A-C 22584153-A-C P3_b2 ***
24907977-C-A 22761830-C-A g1 ***
24908445-G-T 22762298-G-T g1 ***
24965540-G-T 22819393-G-T g1 ***
25029475-G-T 22883328-G-T g1 ***
25067737-A-C 22921590-A-C g1 ***
22353986-A-C 20192100-A-C DYZ19 ***
25323065-A-T 23176918-A-T P2_r1 ***
25530322-T-C 23384175-T-C P1_gr1 ***
25333337-C-T 23187190-C-T P2_r1 ***
25357119-T-G 23210972-T-G P2_r2 ***
25357204-A-G 23211057-A-G P2_r2 ***
25412885-C-T 23266738-C-T P2_r2 ***
25453052-T-C 23306905-T-C P2_r2 ***
25466280-T-G 23320133-T-G P2_r2 ***
25466386-T-G 23320239-T-G P2_r2 ***
25466506-T-A 23320359-T-A P2_r2 ***
22356165-G-A 20194279-G-A DYZ19 ***
22310999-T-A 20149113-T-A DYZ19 ***
22347314-A-G 20185428-A-G DYZ19 ***
20568332-G-A 18406446-G-A P5_Dst ***
20252769-T-A 18090883-T-A P5_Dst ***
20331907-C-A 18170021-C-A P5_Dst ***
20433151-T-A 18271265-T-A P5_Dst ***
20438812-T-C 18276926-T-C P5_Dst ***
20469635-A-G 18307749-A-G P5_Dst ***
20501784-G-A 18339898-G-A P5_Dst ***
20595728-A-C 18433842-A-C P5_Dst ***
20084728-G-T 17972848-G-T P5_Dst ***
20613552-T-C 18451666-T-C P4_Prx ***
20662354-G-T 18500468-G-T P4_Prx ***
20697910-T-A 18536024-T-A P4_Prx ***
20784015-C-A 18622129-C-A P4_Prx ***
20907480-A-T 18745594-A-T P4_Dst ***
20950004-T-A 18788118-T-A P4_Dst ***
21198575-G-T 19036689-G-T ***
20084743-G-T 17972863-G-T P5_Dst ***
20084709-G-T 17972829-G-T P5_Dst ***
21324724-T-C 19162838-T-C ***
19425290-A-G 17313410-A-G ***
18878679-A-G 16766799-A-G ***
18879391-A-T 16767511-A-T ***
18997306-A-G 16885426-A-G ***
19015606-C-T 16903726-C-T ***
19102638-C-A 16990758-C-A ***
19385716-C-T 17273836-C-T ***
19394063-T-C 17282183-T-C Z26451 ***
19541573-G-T 17429693-G-T ***
20084608-G-T 17972728-G-T P5_Dst ***
19541617-T-G 17429737-T-G ***
19604533-C-A 17492653-C-A P5_Prx ***
19753980-C-T 17642100-C-T P5_Prx ***
19775302-C-A 17663422-C-A P5_Prx 32×T***
19874125-T-C 17762245-T-C P5_Prx ***
19927043-A-G 17815163-A-G P5_Prx ***
19967740-G-T 17855860-G-T P5_Prx ***
21277652-T-C 19115766-T-C ***
21339871-C-G 19177985-C-G ***
22347242-A-G 20185356-A-G DYZ19 ***
22309781-G-A 20147895-G-A DYZ19 ***
22267259-T-A 20105373-T-A DYZ19 ***
22267270-T-A 20105384-T-A DYZ19 ***
22282007-G-T 20120121-G-T DYZ19 ***
22282013-C-A 20120127-C-A DYZ19 ***
22282079-G-A 20120193-G-A DYZ19 ***
22293129-A-T 20131243-A-T DYZ19 ***
22304798-T-G 20142912-T-G DYZ19 ***
22309785-C-T 20147899-C-T DYZ19 ***
22248286-A-T 20086400-A-T DYZ19 ***
22310992-T-G 20149106-T-G DYZ19 ***
22311003-T-A 20149117-T-A DYZ19 ***
22311615-T-G 20149729-T-G DYZ19 ***
22329901-A-T 20168015-A-T DYZ19 ***
22332876-G-T 20170990-G-T DYZ19 ***
22332888-G-T 20171002-G-T DYZ19 ***
22341676-C-T 20179790-C-T DYZ19 ***
22267254-C-G 20105368-C-G DYZ19 ***
22247585-T-A 20085699-T-A DYZ19 ***
21347727-G-T 19185841-G-T ***
22152831-T-A 19990945-T-A ***
21634371-T-A 19472485-T-A ***
21634869-A-G 19472983-A-G ***
21668926-T-A 19507040-T-A ***
21742916-G-A 19581030-G-A ***
21830174-G-A 19668288-G-A ***
21830187-C-A 19668301-C-A ***
21945229-G-A 19783343-G-A ***
22182081-C-G 20020195-C-G ***
22241387-C-A 20079501-C-A DYZ19 ***
22182082-T-A 20020196-T-A ***
22182083-G-C 20020197-G-C ***
22182107-A-C 20020221-A-C ***
22211710-C-A 20049824-C-A ***
22234614-G-T 20072728-G-T DYZ19 ***
22234686-C-T 20072800-C-T DYZ19 ***
22235012-A-C 20073126-A-C DYZ19 ***
26111001-G-T 23964854-G-T P1_Y1 ***
26501677-G-A 24355530-G-A P1_Y1 ***
26135400-G-T 23989253-G-T P1_Y1 ***
13239513-CTT-C 11083837-CTT-C 17×T***
5010117-C-CAAAG 5142076-C-CAAAG ***
5415284-T-TTTTATCTA 5547243-T-TTTTATCTA ***
5415289-T-TCTATCTAG 5547248-T-TCTATCTAG ***
5936159-G-GATAT 6068118-G-GATAT 19×AT***
7415630-A-ATAGG 7547589-A-ATAGG ***
8125070-A-AGAAGT 8257029-A-AGAAGT ***
9222818-CTT-C 9385209-CTT-C 13×T***
13483745-TG-GA 11328069-TG-GA ***
3588094-GTATATATA-G 3720053-GTATATATA-G 24×TA***
13487719-CCA-C 11332043-CCA-C ***
13487724-AG-TGA 11332048-AG-TGA ***
13487755-AACCC-CACCA 11332079-AACCC-CACCA ***
13488480-GCAGT-ACAGG 11332804-GCAGT-ACAGG ***
13489621-C-CCTT 11333945-C-CCTT ***
13868404-C-CGGAAT 11747698-C-CGGAAT ***
14026951-A-ATCTT 11906245-A-ATCTT ***
4389404-CAAAAAA-C 4521363-CAAAAAA-C 21×A***
17196748-GTAGAA-AAAGGT 15084868-GTAGAA-AAAGGT ***
14164165-GCC-G 12043459-GCC-G ***
58899876-C-T 56690995-G-A ***
58869715-A-C 56721156-T-G ***
58876968-T-C 56713903-A-G ***
58882094-A-T 56708777-T-A ***
58892456-T-C 56698415-A-G ***
58898119-T-C 56692752-A-G ***
58898173-G-C 56692698-C-G 4×CATTC***
58898284-G-A 56692587-C-T ***
58899978-C-T 56690893-G-A ***
13487660-GA-AG 11331984-GA-AG ***
58910017-C-T 56680854-G-A ***
58910688-T-C 56680183-A-G ***
58910914-G-T 56679957-C-A ***
22261481-TG-T 20099595-TG-T DYZ19 ***
5829008-CACAG-C 5960967-CACAG-C ***
3587315-G-TTT 3719274-G-TTT ***
4167656-CCA-C 4299615-CCA-C ***
22266580-C-CA 20104694-C-CA DYZ19 ***
14083951-T-TAGAC 11963245-T-TAGAC ***
14179080-TAT-CAC 12058374-TAT-CAC ***
58866840-G-T 56724031-C-A ***
25323043-CGGA-GGGG 23176896-CGGA-GGGG P2_r1 ***
22310999-TTCAT-ATCAA 20149113-TTCAT-ATCAA DYZ19 ***
22349266-CCTT-TTTC 20187380-CCTT-TTTC DYZ19 ***
22356768-CATA-GATG 20194882-CATA-GATG DYZ19 ***
22435746-AAGACT-CAGACCG 20273860-AAGACT-CAGACCG DYZ19 ***
24425342-T-TGCAA 22279195-T-TGCAA ***
24446852-A-AATATAT 22300705-A-AATATAT 15×AT***
24595444-CTTG-TTTT 22449297-CTTG-TTTT P3_t2 ***
25456355-C-CA 23310208-C-CA P2_r2 15×A***
22309781-GCTGC-ACTGT 20147895-GCTGC-ACTGT DYZ19 ***
25626800-CAG-AAA 23480653-CAG-AAA P1_b3 ***
28496016-TAAAA-T 26349869-TAAAA-T 17×A***
58855332-GCATTC-G 56735514-CAATGG-C 4×CATTC***
58880431-ACTGA-TCTGT 56710436-TCAGT-ACAGA ***
58899876-CTCC-TTCA 56690992-GGAG-TGAA ***
58910718-CCAGATG-TCATATT 56680147-CATCTGG-AATATGA ***
58986119-TCTCT-CCTCG 56839972-TCTCT-CCTCG ***
22310889-CCTTC-ACTTG 20149003-CCTTC-ACTTG DYZ19 ***
22301040-TC-T 20139154-TC-T DYZ19 ***
14179090-TCGTG-ACATC 12058384-TCGTG-ACATC ***
19537900-TCA-T 17426020-TCA-T ***
14612277-A-ATAGC 12500483-A-ATAGC ***
14719578-TAAAAA-T 12607646-TAAAAA-T 19×A***
15047301-T-TC 12935392-T-TC ***
15928701-TCAAA-T 13816821-TCAAA-T ***
16905869-TC-T 14793989-TC-T ***
17275769-A-AAGGGAAGGGG 15163889-A-AAGGGAAGGGG ***
19206740-GTAAAA-G 17094860-GTAAAA-G ***
20084637-AGA-TGT 17972757-AGA-TGT P5_Dst ***
22299275-C-CT 20137389-C-CT DYZ19 ***
20655022-A-ATATG 18493136-A-ATATG P4_Prx 23×TG***
21409459-C-CAA 19247573-C-CAA ***
22235008-TGCCA-AGCCC 20073122-TGCCA-AGCCC DYZ19 ***
22237029-CTCTGGACAC-GTCAGGAGAA 20075143-CTCTGGACAC-GTCAGGAGAA DYZ19 ***
22237046-GG-TT 20075160-GG-TT DYZ19 ***
22241243-GA-AC 20079357-GA-AC DYZ19 ***
22250222-A-AG 20088336-A-AG DYZ19 ***
22292694-AGT-TAC 20130808-AGT-TAC DYZ19 ***
58867918-A-T 56722953-T-A ***
58866392-G-A 56724479-C-T ***
26246764-G-A 24100617-G-A P1_Y1 ***
27391877-T-C 25245730-T-C P1_g3 ***
26810814-G-T 24664667-G-T P1_g2 ***
26927680-A-T 24781533-A-T P1_r3 ***
26956273-C-A 24810126-C-A P1_r3 ***
26990911-A-G 24844764-A-G P1_r4 ***
27029850-C-A 24883703-C-A P1_r4 ***
27203888-T-G 25057741-T-G P1_g3 ***
27337798-G-A 25191651-G-A P1_g3 ***
27507810-A-C 25361663-A-C P1_Y2 ***
26810501-T-A 24664354-T-A P1_g2 ***
27529040-C-A 25382893-C-A P1_Y2 ***
27542781-C-G 25396634-C-G P1_Y2 ***
27543956-G-C 25397809-G-C P1_Y2 ***
27546182-A-C 25400035-A-C P1_Y2 ***
27571081-A-T 25424934-A-T P1_Y2 ***
27583023-G-T 25436876-G-T P1_Y2 ***
27610059-T-G 25463912-T-G P1_Y2 ***
26810531-C-A 24664384-C-A P1_g2 ***
26741375-A-G 24595228-A-G P1_g2 ***
27635757-G-T 25489610-G-T P1_Y2 ***
26501679-G-A 24355532-G-A P1_Y1 ***
26310761-G-C 24164614-G-C P1_Y1 ***
26315292-A-T 24169145-A-T P1_Y1 ***
26367091-C-A 24220944-C-A P1_Y1 ***
26379699-T-C 24233552-T-C P1_Y1 ***
26465750-T-C 24319603-T-C P1_Y1 ***
18818642-A-T 16706762-A-T ***
26501678-G-C 24355531-G-C P1_Y1 ***
26501681-G-A 24355534-G-A P1_Y1 ***
26725756-C-A 24579609-C-A P1_g2 ***
26501685-A-G 24355538-A-G P1_Y1 ***
26501701-T-A 24355554-T-A P1_Y1 ***
26501718-G-C 24355571-G-C P1_Y1 ***
26501725-G-T 24355578-G-T P1_Y1 ***
26527316-G-T 24381169-G-T P1_g2 ***
26564058-G-A 24417911-G-A P1_g2 ***
26699811-T-G 24553664-T-G P1_g2 ***
26721520-G-T 24575373-G-T P1_g2 ***
27618403-G-T 25472256-G-T P1_Y2 ***
27649849-C-A 25503702-C-A P1_Y2 ***
58858738-A-T 56732133-T-A ***
28385781-A-T 26239634-A-T P1_gr2 ***
28239418-A-T 26093271-A-T P1_b4 ***
28253328-T-A 26107181-T-A P1_b4 ***
28311804-G-T 26165657-G-T P1_b4 ***
28316336-T-G 26170189-T-G P1_b4 ***
28354082-C-A 26207935-C-A P1_gr2 ***
28355908-A-G 26209761-A-G P1_gr2 ***
28373891-C-A 26227744-C-A P1_gr2 ***
28396090-T-A 26249943-T-A P1_gr2 ***
28209089-T-C 26062942-T-C P1_b4 ***
28565877-C-A 26419730-C-A ***
58822926-A-C 56767945-T-G ***
58823229-G-T 56767642-C-A ***
58840743-C-T 56750128-G-A ***
58848337-G-A 56742534-C-T ***
58853726-T-A 56737145-A-T ***
58855702-A-G 56735169-T-C ***
28235019-T-A 26088872-T-A P1_b4 ***
28187541-T-A 26041394-T-A P1_b4 ***
27654514-C-A 25508367-C-A P1_Y2 ***
27854582-T-G 25708435-T-G P1_Y2 ***
27662460-A-T 25516313-A-T P1_Y2 ***
27682182-T-C 25536035-T-C P1_Y2 ***
27691962-T-A 25545815-T-A P1_Y2 ***
27692020-C-A 25545873-C-A P1_Y2 ***
27692181-C-T 25546034-C-T P1_Y2 ***
27713811-G-T 25567664-G-T P1_Y2 ***
27758212-A-C 25612065-A-C P1_Y2 ***
27862200-T-C 25716053-T-C P1_Y2 ***
28146039-C-T 25999892-C-T P1_b4 ***
27915988-T-C 25769841-T-C P1_Y2 ***
27918696-T-A 25772549-T-A P1_Y2 ***
27918750-G-A 25772603-G-A P1_Y2 ***
27964161-C-G 25818014-C-G P1_Y2 ***
27998397-G-A 25852250-G-A P1_Y2 ***
28060090-G-T 25913943-G-T P1_Y2 ***
28081326-A-G 25935179-A-G P1_Y2 ***
28111015-A-C 25964868-A-C P1_Y2 ***
18878337-C-A 16766457-C-A ***
17994672-T-A 15882792-T-A P7_Prx ***
18738210-A-G 16626330-A-G ***
58910709-A-C 56680162-T-G ***
13267850-GCTCA-CCTCT 11112174-GCTCA-CCTCT ***
13730826-CGGC-TGAA 11575150-CGGC-TGAA ***
58910688-TCATATTG-CCA 56680176-CAATATGA-TGG ***
25717365-G-T 23571218-G-T P1_b3 ***
13353528-T-C 11197852-T-C ***
13353539-G-A 11197863-G-A ***
13451074-CT-GG 11295398-CT-GG ***
58840753-T-G 56750118-A-C ***
20989104-TAC-T 18827218-TAC-T P4_Dst 25×AC***
22293338-TAAATT-GAAAGA 20131452-TAAATT-GAAAGA DYZ19 ***
19438259-T-G 17326379-T-G ***
22287097-G-T 20125211-G-T DYZ19 ***
13353477-C-G 11197801-C-G ***
22249347-T-C 20087461-T-C DYZ19 ***
22292682-G-A 20130796-G-A DYZ19 ***
58860578-C-G 56730293-G-C ***
58830725-C-G 56760146-G-C ***
24388082-A-ATC 22241935-A-ATC ***
22310837-T-C 20148951-T-C DYZ19 ***
22309771-T-G 20147885-T-G DYZ19 ***
22309799-C-A 20147913-C-A DYZ19 ***
22309729-CAG-C 20147843-CAG-C DYZ19 ***
22281988-G-A 20120102-G-A DYZ19 ***
25303819-T-C 23157672-T-C P2_r1 ***
22310973-G-A 20149087-G-A DYZ19 ***
22310827-C-G 20148941-C-G DYZ19 ***
22310868-G-A 20148982-G-A DYZ19 ***
13456020-A-ATTCCC 11300344-A-ATTCCC ***
22310893-C-G 20149007-C-G DYZ19 ***
22310903-T-A 20149017-T-A DYZ19 ***
22310921-G-A 20149035-G-A DYZ19 ***
22310950-C-G 20149064-C-G DYZ19 ***
22310985-T-C 20149099-T-C DYZ19 ***
22311015-C-A 20149129-C-A DYZ19 ***
58908771-T-A 56682100-A-T ***
5240968-C-CTCCT 5372927-C-CTCCT ***
13730826-C-T 11575150-C-T ***
22309713-T-C 20147827-T-C DYZ19 ***
3097021-T-C 3228980-T-C ***
22354011-G-C 20192125-G-C DYZ19 ***
5241137-C-T 5373096-C-T ***
2698559-C-A 2830518-C-A ***
2810660-T-C 2942619-T-C ***
2900598-C-T 3032557-C-T ***
2955468-A-T 3087427-A-T ***
3039911-C-T 3171870-C-T ***
3144935-A-C 3276894-A-C ***
22593222-T-C 20431336-T-C ***
3167480-C-A 3299439-C-A Y81837 ***
3441764-C-A 3573723-C-A ***
3461379-T-C 3593338-T-C ***
3482583-T-C 3614542-T-C ***
3548264-C-A 3680223-C-A ***
3874621-C-A 4006580-C-A ***
4063476-C-T 4195435-C-T ***
22266090-T-A 20104204-T-A DYZ19 ***
9915897-G-C 10078288-G-C ***
19040318-T-C 16928438-T-C ***
13471880-CGGT-TGGG 11316204-CGGT-TGGG ***
22491820-G-T 20329934-G-T DYZ19 ***
5241141-C-T 5373100-C-T ***
22356090-T-G 20194204-T-G DYZ19 ***
22356105-T-C 20194219-T-C DYZ19 ***
22356108-T-A 20194222-T-A DYZ19 ***
20084577-A-T 17972697-A-T P5_Dst ***
13267936-CA-TT 11112260-CA-TT ***
58899937-GCATTC-G 56690904-AAATGG-A 5×CATTC***
9970203-A-G 10132594-A-G FGC24663 ***
22235008-T-A 20073122-T-A DYZ19 ***
15047302-T-TC 12935393-T-TC ***
58860670-GCATTC-G 56730171-AAATGG-A 5×CATTC***
13459591-G-T 11303915-G-T ***
13645509-G-T 11489833-G-T ***
22341688-G-T 20179802-G-T DYZ19 ***
22332906-A-G 20171020-A-G DYZ19 ***
22309746-G-A 20147860-G-A DYZ19 ***
13489221-G-C 11333545-G-C ***
4220624-G-T 4352583-G-T ***
22328422-A-T 20166536-A-T DYZ19 ***
22245727-A-G 20083841-A-G DYZ19 ***
22267303-T-G 20105417-T-G DYZ19 ***
22292745-GT-CA 20130859-GT-CA DYZ19 ***
22319019-TCAAG-T 20157133-TCAAG-T DYZ19 ***
22267284-C-G 20105398-C-G DYZ19 ***
22234595-G-C 20072709-G-C DYZ19 ***
28602161-T-A 26456014-T-A ***
5828966-AACACACAC-A 5960925-AACACACAC-A 22×AC***
13262678-G-A 11107002-G-A ***
26902216-G-A 24756069-G-A P1_r3 ***
27248568-GT-G 25102421-GT-G P1_g3 18×T***
22356064-G-C 20194178-G-C DYZ19 ***
5080362-CT-C 5212321-CT-C 15×T***
22237063-T-C 20075177-T-C DYZ19 ***
22237075-G-A 20075189-G-A DYZ19 ***
58999857-G-GA 56853710-G-GA ***
5010109-G-GAAAA 5142068-G-GAAAA ***
21177056-T-TTA 19015170-T-TTA 11×TA***
5289090-T-TAC 5421049-T-TAC 19×AC***
22267276-G-A 20105390-G-A DYZ19 ***
22234658-T-C 20072772-T-C DYZ19 ***
22358173-TTTCG-GTTCA 20196287-TTTCG-GTTCA DYZ19 ***
58820272-C-T 56770599-G-A ***
27151329-G-T 25005182-G-T P1_g3 ***
22366935-G-C 20205049-G-C DYZ19 ***
22500158-C-G 20338272-C-G DYZ19 ***
22252945-C-T 20091059-C-T DYZ19 ***
20025484-C-T 17913604-C-T P5_Prx ***
14334341-G-GT 12213636-G-GT ***
13470408-G-T 11314732-G-T ***
22330004-A-G 20168118-A-G DYZ19 ***
4026253-AT-A 4158212-AT-A 18×T***
13472268-A-C 11316592-A-C S14068 ***
27087610-GCCTTCCTTCCTT-G 24941463-GCCTTCCTTCCTT-G P1_r4 15×CCTT***
22328421-T-C 20166535-T-C DYZ19 ***
58820185-G-T 56770686-C-A ***
5241133-C-T 5373092-C-T ***
13267524-A-G 11111848-A-G ***
27078013-GAC-G 24931866-GAC-G P1_r4 24×AC***
13737667-T-C 11581991-T-C ***
22309703-C-G 20147817-C-G DYZ19 ***
22234967-G-A 20073081-G-A DYZ19 ***
13733865-AC-TG 11578189-AC-TG ***
25717453-C-A 23571306-C-A P1_b3 ***
58820187-A-C 56770684-T-G ***
13489363-C-G 11333687-C-G ***
13489369-C-A 11333693-C-A ***
27610099-T-G 25463952-T-G P1_Y2 ***
58986189-CT-GC 56840042-CT-GC ***
58903327-G-A 56687544-C-T ***
20252794-TAC-AAA 18090908-TAC-AAA P5_Dst ***
22262560-C-A 20100674-C-A DYZ19 ***
22267268-C-A 20105382-C-A DYZ19 ***
25717380-G-A 23571233-G-A P1_b3 ***
58828905-G-C 56761966-C-G ***
22297150-TTTCA-GTACT 20135264-TTTCA-GTACT DYZ19 ***
27971680-C-A 25825533-C-A P1_Y2 ***
22421272-TTCAT-ATCAA 20259386-TTCAT-ATCAA DYZ19 ***
13292727-C-T 11137051-C-T ***
58892529-C-G 56698342-G-C ***
13470457-A-G 11314781-A-G ***
17950825-AATAT-A 15838945-AATAT-A 27×AT***
22258043-A-G 20096157-A-G DYZ19 ***
59004611-GGAAA-G 56858464-GGAAA-G ***
13729803-C-T 11574127-C-T ***
16692103-CAAAG-AAAAA 14580223-CAAAG-AAAAA ***
22248076-G-A 20086190-G-A DYZ19 ***
22310934-A-C 20149048-A-C DYZ19 ***
58862812-T-G 56728059-A-C ***
25466448-T-G 23320301-T-G P2_r2 ***
4623393-C-A 4755352-C-A ***
13489111-G-C 11333435-G-C ***
13489140-C-A 11333464-C-A ***
13489192-G-C 11333516-G-C ***
22500062-T-C 20338176-T-C DYZ19 ***
58843307-T-C 56747564-A-G FGC42762 ***
4098180-A-G 4230139-A-G ***
4275280-C-A 4407239-C-A ***
18518331-G-T 16406451-G-T P6_Dst ***
14179092-G-A 12058386-G-A ***
13981551-C-G 11860845-C-G ***
14131556-C-T 12010850-C-T ***
14179048-A-C 12058342-A-C ***
14179059-C-T 12058353-C-T ***
14179080-T-C 12058374-T-C ***
14179082-T-C 12058376-T-C ***
14179090-T-A 12058384-T-A ***
14179094-G-C 12058388-G-C ***
13962093-C-A 11841387-C-A ***
14179113-A-G 12058407-A-G ***
14620591-T-C 12508789-T-C ***
14630876-G-A 12518945-G-A ***
14630993-A-G 12519062-A-G ***
14962350-A-T 12850425-A-T ***
14977320-G-T 12865395-G-T ***
15001484-G-T 12889569-G-T ***
13962104-A-T 11841398-A-T ***
13837325-C-T 11716619-C-T ***
15243042-T-C 13131128-T-C ***
13548535-T-C 11392859-T-C ***
13487724-A-T 11332048-A-T ***
13487748-A-C 11332072-A-C ***
13488145-G-C 11332469-G-C ***
13488177-C-A 11332501-C-A ***
13489231-C-T 11333555-C-T ***
13489256-C-G 11333580-C-G ***
13489679-C-A 11334003-C-A ***
13585858-G-T 11430182-G-T ***
13744765-C-G 11589089-C-G ***
13602047-C-A 11446371-C-A ***
13645541-C-A 11489865-C-A ***
13730899-G-A 11575223-G-A ***
13733531-T-A 11577855-T-A ***
13740681-T-C 11585005-T-C ***
13740997-C-T 11585321-C-T ***
13743522-C-A 11587846-C-A ***
15231723-T-G 13119809-T-G ***
15243043-G-A 13131129-G-A ***
13486824-G-C 11331148-G-C ***
18015792-G-A 15903912-G-A P7_Dst ***
17130473-G-A 15018593-G-A ***
17160325-T-G 15048445-T-G ***
17164465-T-C 15052585-T-C ***
17618376-A-G 15506496-A-G ***
17834563-G-T 15722683-G-T ***
17946948-C-T 15835068-C-T ***
6347741-A-AGAAAGAAGGAAGGAAG 6479700-A-AGAAAGAAGGAAGGAAG 9×GAAG***
18042588-C-A 15930708-C-A ***
16999435-A-C 14887555-A-C ***
18272302-C-A 16160422-C-A P6_Prx ***
18275277-T-A 16163397-T-A P6_Prx ***
18282820-A-G 16170940-A-G P6_Prx ***
18344215-C-A 16232335-C-A P6_Prx ***
18345800-A-T 16233920-A-T P6_Prx ***
18447974-G-T 16336094-G-T P6_Dst ***
18471537-G-A 16359657-G-A P6_Dst ***
16999452-T-C 14887572-T-C ***
16999434-G-T 14887554-G-T ***
15243061-C-T 13131147-C-T ***
15644489-C-A 13532609-C-A ***
15243065-T-G 13131151-T-G ***
15243072-C-T 13131158-C-T ***
15243084-T-A 13131170-T-A ***
15247701-G-T 13135787-G-T ***
15264184-G-T 13152274-G-T ***
15300730-T-C 13188829-T-C ***
15300977-A-T 13189076-A-T ***
15646934-C-A 13535054-C-A ***
16999413-G-A 14887533-G-A ***
15919642-T-C 13807762-T-C ***
16313194-G-A 14201314-G-A ***
16498291-G-T 14386411-G-T ***
16573222-G-T 14461342-G-T ***
16685293-G-A 14573413-G-A ***
16739283-A-G 14627403-A-G ***
16999396-T-C 14887516-T-C ***
13487672-A-G 11331996-A-G ***
13486793-C-G 11331117-C-G ***
4331918-C-T 4463877-C-T ***
7387424-A-C 7519383-A-C ***
6586841-C-A 6718800-C-A ***
6903352-G-C 7035311-G-C ***
6917462-G-T 7049421-G-T ***
7264475-A-T 7396434-A-T ***
7264477-T-C 7396436-T-C ***
7299429-A-G 7431388-A-G ***
7328103-A-G 7460062-A-G ***
7441004-C-A 7572963-C-A ***
6393964-G-A 6525923-G-A ***
7442630-G-A 7574589-G-A ***
7490038-C-A 7621997-C-A IR1_L ***
8322717-A-T 8454676-A-T ***
9032457-G-T 9194848-G-T ***
9191039-T-C 9353430-T-C ***
9197949-G-T 9360340-G-T ***
9202492-C-T 9364883-C-T ***
6394048-T-G 6526007-T-G ***
6312904-C-T 6444863-C-T IR3_Dst ***
9299280-C-A 9461671-C-A ***
5810146-C-A 5942105-C-A ***
4621425-G-A 4753384-G-A ***
4623398-A-C 4755357-A-C ***
4802521-T-C 4934480-T-C ***
4846961-A-T 4978920-A-T ***
4846963-G-A 4978922-G-A ***
5281654-A-C 5413613-A-C ***
5434160-G-A 5566119-G-A ***
5826776-T-C 5958735-T-C ***
6294167-C-T 6426126-C-T IR3_Dst ***
5836929-C-T 5968888-C-T ***
5885520-T-C 6017479-T-C ***
5986605-T-G 6118564-T-G ***
6151768-C-A 6283727-C-A IR3_Dst ***
6173187-T-C 6305146-T-C IR3_Dst ***
6197782-G-T 6329741-G-T IR3_Dst ***
6279385-G-T 6411344-G-T IR3_Dst ***
9297931-T-A 9460322-T-A ***
9301433-C-A 9463824-C-A ***
13486693-A-G 11331017-A-G ***
13396812-G-A 11241136-G-A ***
13382387-G-T 11226711-G-T ***
13382391-T-C 11226715-T-C ***
13389812-C-T 11234136-C-T ***
13389826-C-G 11234150-C-G ***
13389827-A-G 11234151-A-G ***
13389829-A-G 11234153-A-G ***
13389836-A-G 11234160-A-G ***
13398330-A-C 11242654-A-C ***
13382366-G-A 11226690-G-A ***
13459360-C-A 11303684-C-A ***
13470078-G-A 11314402-G-A ***
13470443-G-T 11314767-G-T ***
13472286-T-G 11316610-T-G ***
13479319-G-T 11323643-G-T ***
13483745-T-G 11328069-T-G ***
13483746-G-A 11328070-G-A ***
13382372-T-C 11226696-T-C ***
13380345-T-C 11224669-T-C ***
9438240-A-G 9600631-A-G ***
9673397-T-C 9835788-T-C IR3_Prx ***
9524079-G-T 9686470-G-T ***
9581201-A-C 9743592-A-C IR3_Prx ***
9605803-A-G 9768194-A-G IR3_Prx ***
9615463-C-A 9777854-C-A IR3_Prx ***
9620287-G-T 9782678-G-T IR3_Prx ***
9620513-C-T 9782904-C-T IR3_Prx ***
9666273-C-A 9828664-C-A IR3_Prx ***
9693955-A-T 9856346-A-T IR3_Prx ***
13324155-C-A 11168479-C-A ***
9709396-C-G 9871787-C-G IR3_Prx ***
9912949-A-C 10075340-A-C ***
9930624-C-A 10093015-C-A ***
10035438-T-A 10197829-T-A ***
10074459-A-G 10236850-A-G ***
10099433-C-A 10261824-C-A ***
13253383-A-T 11097707-A-T ***
59004632-G-GAAAA 56858485-G-GAAAA ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Haplotype Progression

The data below reveals the progression of changes in the haplotype. The bottom row is the haplotype for this man and above him are the inferred ancestral haplotypes for various upstream blocks. These inferred haplotypes are very much a work in progress, and any suggested modifications are appreciated. I think we can use our vast collection of haplotype data to refine these haplotypes. Mutations made from each upstream block are shown in sequence. The cell color is determined by the block in which the mutation took place.

DYS393
DYS390
DYS19
DYS391
DYS385
DYS426
DYS388
DYS439
DYS389i
DYS392
DYS389ii
DYS458
DYS459
DYS455
DYS454
DYS447
DYS437
DYS448
DYS449
DYS464
DYS460
Y-GATA-H4
YCAII
DYS456
DYS607
DYS576
DYS570
CDY
DYS442
DYS438
DYS531
DYS578
DYF395S1
DYS590
DYS537
DYS641
DYS472
DYF406S1
DYS511
DYS425
DYS413
DYS557
DYS594
DYS436
DYS490
DYS534
DYS450
DYS444
DYS481
DYS520
DYS446
DYS617
DYS568
DYS487
DYS572
DYS640
DYS492
DYS565
DYS710
DYS485
DYS632
DYS495
DYS540
DYS714
DYS716
DYS717
DYS505
DYS556
DYS549
DYS589
DYS522
DYS494
DYS533
DYS636
DYS575
DYS638
DYS462
DYS452
DYS445
Y-GATA-A10
DYS463
DYS441
Y-GGAAT-1B07
DYS525
DYS712
DYS593
DYS650
DYS532
DYS715
DYS504
DYS513
DYS561
DYS552
DYS726
DYS635
DYS587
DYS643
DYS497
DYS510
DYS434
DYS461
DYS435
P312/S1161324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123315916122626191211131210912121011113012132413101020151913241712152412231810141791211
L21/S1451324141111-14121212131329179-1011112515192915-15-17-17111119-231615181736-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
DF21/S1921324141111-14121212131329179-1011112515192915-15-17-17111119-231615181836-38121211915-1681010810101223-231610121215812222013121113111112123515916122526191211131211912121011113012132413101020151913241712152412231810141791211
Kane1424141011-14121213131329179-1011112515192915-15-17-17111119-231415181936-37111211915-168101089101223-23161012121791222211312111311111212

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: LTKMM*16000000100000008300000
Used in age calculations16000000100000008300000
Counts of SNPs11
Variant counts last updated 2018-05-15 22:21:22.

* BED data not available. Using default values.


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