Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z2959 > Z46375 > DF106 > DF104 > DF105 > A18726 > A259 > Y19870 > BY11725 > FGC42414

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFGC
XFEFM
4547679-G-A 4679638-G-A FGC42410 +
8725253-G-A 8857212-G-A FGC42411 YY+
9384786-C-G 9547177-C-G FGC42412 Y+
9693106-T-C 9855497-T-C FGC42413 IR3_Prx +
18185124-C-T 16073244-C-T FGC42415 Y+
19035798-A-C 16923918-A-C FGC42416 YY+
23013635-C-T 20851749-C-T FGC42418 YY+
24877609-G-C 22731462-G-C FGC42420 g1 +
24879371-G-T 22733224-G-T FGC42421 g1 +
28580874-A-G 26434727-A-G FGC42422 FTB13671 +
28728750-A-AT 26582603-A-AT +
22359143-G-C 20197257-G-C FGC42417 DYZ19 *
24188630-C-G 22042483-C-G FGC42419 P3_b1 *
6091759-TA-T 6223718-TA-T *
19425267-T-A 17313387-T-A **
8666801-G-A 8798760-G-A **
13339784-T-C 11184108-T-C **
13393000-A-T 11237324-A-T **
15102613-C-T 12990701-C-T **
15187635-C-T 13075721-C-T **
15187681-T-A 13075767-T-A **
15247658-G-A 13135744-G-A **
15884145-G-T 13772265-G-T **
17700080-C-T 15588200-C-T **
17700084-T-C 15588204-T-C **
17700085-G-A 15588205-G-A **
17700086-T-C 15588206-T-C **
18190399-G-A 16078519-G-A YFS1386777 **
18190400-A-T 16078520-A-T YFS1386778 **
19425268-C-G 17313388-C-G **
19425269-A-T 17313389-A-T **
19425280-C-G 17313400-C-G **
19425281-A-G 17313401-A-G **
21631609-G-A 19469723-G-A **
22151317-A-G 19989431-A-G **
22164262-A-G 20002376-A-G YFS1386831 FTB20469 **
22164269-C-A 20002383-C-A YFS1386832 FTB20470 **
22457252-T-G 20295366-T-G DYZ19 **
23102783-A-T 20940897-A-T **
24375348-G-A 22229201-G-A **
25181764-C-G 23035617-C-G g1 **
28794830-C-G 26648683-C-G **
58856356-T-G 56734515-A-C **
58862646-G-C 56728225-C-G **
3822962-GATATATAT-G 3954921-GATATATAT-G 26×AT**
5936159-GAT-G 6068118-GAT-G 19×AT**
13585500-GGC-G 11429824-GGC-G **
17231048-GA-G 15119168-GA-G **
17895992-T-TA 15784112-T-TA **
23134163-TTGTTAAAACCTC-T 20972277-TTGTTAAAACCTC-T **
23293596-GTGTATATA-G 21131710-GTGTATATA-G **
13724011-G-T 11568335-G-T ***
13724013-G-C 11568337-G-C ***
14407185-T-C 12286483-T-C A7241 ***
22360342-G-C 20198456-G-C DYZ19 ***
22360334-CGAA-AGAC 20198448-CGAA-AGAC DYZ19 ***
22504690-C-A 20342804-C-A DYZ19 ***
13445465-CA-GG 11289789-CA-GG ***
13258251-GAC-TA 11102575-GAC-TA ***
22293342-TT-GA 20131456-TT-GA DYZ19 ***
58910951-G-T 56679920-C-A ***
22297736-T-A 20135850-T-A DYZ19 ***
24388090-A-ATC 22241943-A-ATC ***
22234939-C-A 20073053-C-A DYZ19 ***
15290982-C-T 13179081-C-T 17×T***
5486876-C-A 5618835-C-A 21×A***
3432966-TTATA-T 3564925-TTATA-T 10×TA***
22292005-C-T 20130119-C-T DYZ19 ***
28008591-C-A 25862444-C-A P1_Y2 11×A***
22505127-A-G 20343241-A-G DYZ19 ***
5224862-A-G 5356821-A-G ***
17275763-G-GAAGGA 15163883-G-GAAGGA ***
22322768-A-C 20160882-A-C DYZ19 ***
24387108-C-A 22240961-C-A ***
20332069-T-A 18170183-T-A P5_Dst ***
22332915-A-T 20171029-A-T DYZ19 ***
58876979-G-C 56713892-C-G ***
22333380-C-G 20171494-C-G DYZ19 ***
5477636-C-A 5609595-C-A ***
22322368-C-T 20160482-C-T DYZ19 ***
22223821-G-T 20061935-G-T DYZ19 ***
22234967-G-A 20073081-G-A DYZ19 ***
22422143-G-A 20260257-G-A DYZ19 ***
28602532-A-G 26456385-A-G ***
58830228-A-C 56760643-T-G ***
13203875-CAT-GAG 11048199-CAT-GAG ***
13472473-ACCCTGGC-CCCTTG 11316797-ACCCTGGC-CCCTTG ***
13486822-CAGT-AAGG 11331146-CAGT-AAGG ***
20426270-C-G 18264384-C-G P5_Dst ***
58853569-ATTCCA-T 56737297-TGGAAT-A ***
22300886-C-T 20139000-C-T DYZ19 ***
13742278-T-C 11586602-T-C ***
22229450-G-A 20067564-G-A DYZ19 ***
27528893-C-A 25382746-C-A P1_Y2 ***
58889128-C-G 56701743-G-C ***
6226038-TTCTA-T 6357997-TTCTA-T IR3_Dst ***
26310780-C-T 24164633-C-T P1_Y1 ***
58860578-C-G 56730293-G-C ***
58846435-C-T 56744436-G-A ***
58971885-T-TGTAC 56825738-T-TGTAC ***
58833554-G-A 56757317-C-T ***
21940037-C-CATAT 19778151-C-CATAT 22×AT***
22431581-A-T 20269695-A-T DYZ19 ***
13489132-CTGGC-ACGGT 11333456-CTGGC-ACGGT ***
20084617-A-T 17972737-A-T P5_Dst ***
20084826-A-T 17972946-A-T P5_Dst ***
20084916-A-T 17973036-A-T P5_Dst ***
27586161-A-T 25440014-A-T P1_Y2 ***
22300885-C-A 20138999-C-A DYZ19 ***
9075188-C-T 9237579-C-T 20×T***
58910759-C-T 56680112-G-A ***
58874709-C-G 56716162-G-C ***
58886938-T-G 56703933-A-C ***
22366077-T-C 20204191-T-C DYZ19 ***
22499876-G-T 20337990-G-T DYZ19 ***
5404762-C-T 5536721-C-T ***
22341375-G-T 20179489-G-T DYZ19 ***
22341305-C-A 20179419-C-A DYZ19 ***
2877738-G-A 3009697-G-A ***
2922121-G-T 3054080-G-T ***
3512034-G-T 3643993-G-T ***
3534589-C-T 3666548-C-T ***
3536744-G-T 3668703-G-T ***
3561455-T-C 3693414-T-C ***
4118710-T-A 4250669-T-A ***
4220850-C-T 4352809-C-T ***
4619463-C-T 4751422-C-T ***
4699174-A-G 4831133-A-G ***
4726153-C-A 4858112-C-A ***
4794938-C-T 4926897-C-T ***
4822765-C-A 4954724-C-A ***
5231926-G-T 5363885-G-T ***
5235464-G-T 5367423-G-T ***
5378158-T-C 5510117-T-C ***
5378176-C-A 5510135-C-A ***
5430807-T-A 5562766-T-A ***
5785652-G-A 5917611-G-A ***
5813484-C-T 5945443-C-T ***
6041333-G-T 6173292-G-T ***
6089624-A-T 6221583-A-T ***
6150412-G-T 6282371-G-T IR3_Dst ***
6252817-C-T 6384776-C-T IR3_Dst ***
6310594-C-A 6442553-C-A IR3_Dst ***
6311649-G-T 6443608-G-T IR3_Dst ***
6312675-G-A 6444634-G-A IR3_Dst ***
6558242-C-A 6690201-C-A ***
6559699-G-T 6691658-G-T ***
6565437-T-A 6697396-T-A ***
6713136-G-C 6845095-G-C ***
7001973-G-T 7133932-G-T ***
7118160-G-A 7250119-G-A ***
7474934-C-T 7606893-C-T IR1_L ***
7966634-C-G 8098593-C-G ***
8213903-A-G 8345862-A-G ***
8321802-G-T 8453761-G-T ***
8786123-T-G 8918082-T-G ***
9200079-A-T 9362470-A-T ***
9200152-C-A 9362543-C-A ***
9351221-C-A 9513612-C-A ***
9472405-A-T 9634796-A-T ***
9545048-A-T 9707439-A-T IR3_Prx ***
9577591-C-T 9739982-C-T IR3_Prx ***
9623662-A-C 9786053-A-C IR3_Prx ***
9699663-C-A 9862054-C-A IR3_Prx ***
9782352-A-T 9944743-A-T ***
9784304-G-T 9946695-G-T ***
9804531-T-A 9966922-T-A ***
9890362-A-G 10052753-A-G ***
9910803-T-G 10073194-T-G ***
9911018-C-T 10073409-C-T ***
9976681-G-T 10139072-G-T ***
9976682-A-T 10139073-A-T ***
10033766-G-A 10196157-G-A ***
10033910-G-C 10196301-G-C ***
10037230-A-G 10199621-A-G ***
10047233-C-A 10209624-C-A ***
13114882-T-C 10604368-T-C ***
13254191-C-T 11098515-C-T ***
13254604-T-G 11098928-T-G ***
13261315-C-T 11105639-C-T ***
13311796-C-T 11156120-C-T ***
13341563-C-T 11185887-C-T ***
13461066-G-A 11305390-G-A ***
13462150-T-G 11306474-T-G ***
13466482-G-A 11310806-G-A ***
13470558-C-T 11314882-C-T ***
13470561-T-A 11314885-T-A ***
13470568-C-G 11314892-C-G ***
13489132-C-A 11333456-C-A ***
13489133-T-C 11333457-T-C ***
13489205-T-A 11333529-T-A ***
13489206-C-A 11333530-C-A ***
13489215-C-A 11333539-C-A ***
13489309-G-A 11333633-G-A ***
13489310-G-T 11333634-G-T ***
13489329-C-G 11333653-C-G ***
13548959-A-G 11393283-A-G ***
13549002-A-G 11393326-A-G ***
13563376-G-T 11407700-G-T ***
13593712-T-A 11438036-T-A ***
13600600-C-A 11444924-C-A ***
13606668-G-A 11450992-G-A ***
13606671-T-A 11450995-T-A ***
13645333-A-T 11489657-A-T ***
13726798-G-T 11571122-G-T ***
13726799-G-T 11571123-G-T ***
13740786-T-G 11585110-T-G ***
13740798-G-C 11585122-G-C ***
13744283-A-T 11588607-A-T ***
13833483-A-G 11712777-A-G ***
14058898-G-A 11938192-G-A YFS1386713 FTB20464 ***
14261239-G-A 12140533-G-A ***
14390993-G-T 12270289-G-T ***
14549183-G-T 12437384-G-T ***
14565116-T-C 12453316-T-C ***
14565118-A-C 12453318-A-C ***
14656116-G-T 12544181-G-T ***
14661304-T-C 12549369-T-C ***
14725907-G-C 12613975-G-C ***
14737216-C-T 12625284-C-T ***
14989081-T-A 12877147-T-A ***
15117091-A-C 13005178-A-C ***
15141197-G-A 13029284-G-A ***
15300791-C-A 13188890-C-A ***
15300792-T-C 13188891-T-C ***
15629135-G-T 13517255-G-T ***
15630762-T-C 13518882-T-C ***
16067735-C-A 13955855-C-A ***
16498505-G-T 14386625-G-T ***
16720114-G-T 14608234-G-T ***
16738981-T-G 14627101-T-G ***
16834770-A-G 14722890-A-G ***
16997367-A-G 14885487-A-G ***
17085294-T-C 14973414-T-C ***
17854677-G-A 15742797-G-A ***
17988039-C-A 15876159-C-A P7_Prx ***
18135740-A-T 16023860-A-T ***
18228928-G-T 16117048-G-T ***
18231188-A-C 16119308-A-C ***
18297929-A-C 16186049-A-C P6_Prx ***
18297951-A-T 16186071-A-T P6_Prx ***
18298017-C-T 16186137-C-T P6_Prx ***
18329261-C-T 16217381-C-T P6_Prx ***
18443978-G-T 16332098-G-T P6_Dst ***
18540940-A-C 16429060-A-C ***
18734309-G-A 16622429-G-A ***
18761920-G-A 16650040-G-A ***
18846334-C-T 16734454-C-T ***
19014536-C-T 16902656-C-T ***
19083771-G-A 16971891-G-A ***
19085596-T-C 16973716-T-C ***
19098834-C-A 16986954-C-A ***
19178198-G-T 17066318-G-T ***
19187481-G-T 17075601-G-T ***
19297659-G-T 17185779-G-T ***
19330088-T-G 17218208-T-G ***
19330089-G-A 17218209-G-A ***
19330164-C-T 17218284-C-T ***
19426856-A-T 17314976-A-T ***
19757253-T-G 17645373-T-G P5_Prx ***
19775476-C-T 17663596-C-T P5_Prx ***
19775485-C-T 17663605-C-T P5_Prx ***
19792043-G-T 17680163-G-T P5_Prx ***
19799261-T-A 17687381-T-A P5_Prx ***
19828171-G-A 17716291-G-A P5_Prx ***
19853624-G-T 17741744-G-T P5_Prx ***
19853700-G-T 17741820-G-T P5_Prx ***
19967620-G-T 17855740-G-T P5_Prx ***
19987870-C-A 17875990-C-A P5_Prx ***
20084344-C-T 17972464-C-T P5_Dst ***
20084637-A-T 17972757-A-T P5_Dst ***
20084661-C-T 17972781-C-T P5_Dst ***
20084717-G-T 17972837-G-T P5_Dst ***
20084777-A-T 17972897-A-T P5_Dst ***
20084799-C-T 17972919-C-T P5_Dst ***
20084803-G-T 17972923-G-T P5_Dst ***
20084855-G-T 17972975-G-T P5_Dst ***
20084859-A-T 17972979-A-T P5_Dst ***
20084870-A-T 17972990-A-T P5_Dst ***
20084922-C-T 17973042-C-T P5_Dst ***
20101599-C-A 17989719-C-A P5_Dst ***
20101851-A-G 17989971-A-G P5_Dst ***
20105156-C-A 17993276-C-A P5_Dst ***
20243382-A-G 18081496-A-G P5_Dst ***
20252488-C-T 18090602-C-T P5_Dst ***
20252646-C-A 18090760-C-A P5_Dst ***
20252697-C-A 18090811-C-A P5_Dst ***
20252729-G-A 18090843-G-A P5_Dst ***
20252739-T-A 18090853-T-A P5_Dst ***
20252786-C-A 18090900-C-A P5_Dst ***
20329784-C-T 18167898-C-T P5_Dst ***
20331818-T-A 18169932-T-A P5_Dst ***
20335654-A-G 18173768-A-G P5_Dst ***
20350592-G-T 18188706-G-T P5_Dst ***
20359132-A-C 18197246-A-C P5_Dst ***
20453594-A-T 18291708-A-T P5_Dst ***
20568364-C-A 18406478-C-A P5_Dst ***
20568724-A-T 18406838-A-T P5_Dst ***
20570038-C-T 18408152-C-T P5_Dst ***
20574024-G-T 18412138-G-T P5_Dst ***
20663594-A-G 18501708-A-G P4_Prx ***
20907427-G-T 18745541-G-T P4_Dst ***
20907973-C-A 18746087-C-A P4_Dst ***
20967437-C-A 18805551-C-A P4_Dst ***
20970174-T-C 18808288-T-C P4_Dst ***
21056492-T-C 18894606-T-C ***
21171585-G-C 19009699-G-C ***
21511750-A-C 19349864-A-C ***
21535738-C-A 19373852-C-A ***
21630225-C-T 19468339-C-T ***
21914187-T-A 19752301-T-A ***
21914207-C-A 19752321-C-A ***
21914214-A-G 19752328-A-G ***
21929678-G-T 19767792-G-T ***
21997014-C-A 19835128-C-A ***
22235008-T-A 20073122-T-A DYZ19 ***
22258028-G-T 20096142-G-T BY214545 DYZ19 ***
22283212-T-A 20121326-T-A DYZ19 ***
22283213-A-G 20121327-A-G DYZ19 ***
22283221-T-C 20121335-T-C DYZ19 ***
22283232-A-G 20121346-A-G DYZ19 ***
22283234-A-T 20121348-A-T DYZ19 ***
22283238-G-T 20121352-G-T DYZ19 ***
22311209-C-T 20149323-C-T DYZ19 ***
22320858-T-G 20158972-T-G FGC44708 DYZ19 ***
22330239-T-C 20168353-T-C DYZ19 ***
22332948-A-T 20171062-A-T DYZ19 ***
22338697-T-G 20176811-T-G DYZ19 ***
22341292-G-A 20179406-G-A DYZ19 ***
22346841-T-A 20184955-T-A DYZ19 ***
22346904-C-G 20185018-C-G DYZ19 ***
22354151-C-T 20192265-C-T DYZ19 ***
22356684-T-G 20194798-T-G DYZ19 ***
22358194-A-T 20196308-A-T DYZ19 ***
22358359-C-G 20196473-C-G DYZ19 ***
22360321-A-T 20198435-A-T DYZ19 ***
22360322-G-T 20198436-G-T DYZ19 ***
22366045-T-C 20204159-T-C DYZ19 ***
22366076-A-G 20204190-A-G DYZ19 ***
22422068-A-G 20260182-A-G DYZ19 ***
22422085-G-C 20260199-G-C DYZ19 ***
22422099-G-T 20260213-G-T DYZ19 ***
22422122-A-C 20260236-A-C DYZ19 ***
22457265-C-G 20295379-C-G DYZ19 ***
22482929-T-G 20321043-T-G DYZ19 ***
22482931-C-G 20321045-C-G DYZ19 ***
22499902-T-C 20338016-T-C DYZ19 ***
22503000-G-T 20341114-G-T DYZ19 ***
22503509-G-A 20341623-G-A DYZ19 ***
22504660-A-C 20342774-A-C DYZ19 ***
22505136-G-A 20343250-G-A DYZ19 ***
22505153-T-A 20343267-T-A DYZ19 ***
22505154-T-C 20343268-T-C DYZ19 ***
22505177-T-A 20343291-T-A DYZ19 ***
22505179-T-G 20343293-T-G DYZ19 ***
22593516-C-A 20431630-C-A ***
22619970-C-G 20458084-C-G ***
22642647-A-G 20480761-A-G ***
22779187-G-A 20617301-G-A ***
23006490-A-G 20844604-A-G ***
23100208-T-A 20938322-T-A ***
23180773-C-A 21018887-C-A ***
23181434-C-A 21019548-C-A ***
23228497-G-T 21066611-G-T ***
23261146-G-T 21099260-G-T ***
23448397-C-A 21286511-C-A ***
23520981-C-A 21359095-C-A ***
23808216-C-A 21646330-C-A ***
24043630-T-C 21897483-T-C ***
24051030-G-T 21904883-G-T P3_b1 ***
24126088-T-G 21979941-T-G P3_b1 ***
24133348-C-A 21987201-C-A P3_b1 ***
24211289-A-C 22065142-A-C P3_b1 ***
24231637-C-A 22085490-C-A P3_b1 ***
24231962-T-C 22085815-T-C P3_b1 ***
24257514-G-A 22111367-G-A P3_b1 ***
24264970-A-T 22118823-A-T P3_b1 ***
24264981-G-T 22118834-G-T P3_b1 ***
24290840-T-A 22144693-T-A P3_t1 ***
24387113-C-A 22240966-C-A ***
24573678-C-A 22427531-C-A P3_t2 ***
24605217-C-T 22459070-C-T P3_t2 ***
24646654-A-G 22500507-A-G P3_b2 ***
24673700-T-A 22527553-T-A P3_b2 ***
24763542-T-C 22617395-T-C P3_b2 ***
24771059-G-A 22624912-G-A P3_b2 ***
24771141-G-T 22624994-G-T P3_b2 ***
24771148-G-T 22625001-G-T P3_b2 ***
24862194-T-G 22716047-T-G IR1_R ***
24914311-T-A 22768164-T-A g1 ***
24997292-T-C 22851145-T-C g1 ***
25012695-G-T 22866548-G-T g1 ***
25058884-T-A 22912737-T-A g1 ***
25110238-A-G 22964091-A-G g1 ***
25110324-C-T 22964177-C-T g1 ***
25137515-C-G 22991368-C-G g1 ***
25200310-C-T 23054163-C-T g1 ***
25268552-G-A 23122405-G-A P2_r1 ***
25268557-T-C 23122410-T-C P2_r1 ***
25297656-T-A 23151509-T-A P2_r1 ***
25310575-T-C 23164428-T-C P2_r1 ***
25452969-G-T 23306822-G-T P2_r2 ***
25508919-C-T 23362772-C-T P1_gr1 ***
25510502-C-T 23364355-C-T P1_gr1 ***
25511662-T-C 23365515-T-C P1_gr1 ***
25520132-T-G 23373985-T-G P1_gr1 ***
25545852-T-C 23399705-T-C P1_gr1 ***
25617849-T-A 23471702-T-A P1_gr1 ***
25626249-A-C 23480102-A-C P1_b3 ***
25626282-A-T 23480135-A-T P1_b3 ***
25825701-T-C 23679554-T-C P1_b3 ***
25825946-C-A 23679799-C-A P1_b3 ***
25825964-C-A 23679817-C-A P1_b3 ***
25825973-C-A 23679826-C-A P1_b3 ***
25902150-T-G 23756003-T-G P1_Y1 ***
25930342-C-A 23784195-C-A P1_Y1 ***
25973802-C-A 23827655-C-A P1_Y1 ***
25973816-A-T 23827669-A-T P1_Y1 ***
26022127-A-C 23875980-A-C P1_Y1 ***
26047573-G-T 23901426-G-T P1_Y1 ***
26047591-A-T 23901444-A-T P1_Y1 ***
26100553-A-G 23954406-A-G P1_Y1 ***
26139555-T-C 23993408-T-C P1_Y1 ***
26154758-G-T 24008611-G-T P1_Y1 ***
26154792-A-G 24008645-A-G P1_Y1 ***
26154817-G-T 24008670-G-T P1_Y1 ***
26179165-G-C 24033018-G-C P1_Y1 ***
26206333-A-G 24060186-A-G P1_Y1 ***
26310742-A-T 24164595-A-T P1_Y1 ***
26359455-C-A 24213308-C-A P1_Y1 ***
26459274-G-T 24313127-G-T P1_Y1 ***
26463585-A-T 24317438-A-T P1_Y1 ***
26519742-G-T 24373595-G-T P1_Y1 ***
26542907-A-G 24396760-A-G P1_g2 ***
26553893-T-G 24407746-T-G P1_g2 ***
26616810-A-T 24470663-A-T P1_g2 ***
26658724-G-T 24512577-G-T P1_g2 ***
26713740-C-T 24567593-C-T P1_g2 ***
26748979-A-T 24602832-A-T P1_g2 ***
26810625-G-T 24664478-G-T P1_g2 ***
26810657-A-G 24664510-A-G P1_g2 ***
26810706-A-G 24664559-A-G P1_g2 ***
26890370-T-G 24744223-T-G P1_r3 ***
26902256-C-A 24756109-C-A P1_r3 ***
26902281-C-A 24756134-C-A P1_r3 ***
26906655-A-C 24760508-A-C P1_r3 ***
26908043-G-A 24761896-G-A P1_r3 ***
26980527-A-G 24834380-A-G P1_r4 ***
26981438-T-C 24835291-T-C P1_r4 ***
27151372-G-T 25005225-G-T P1_g3 ***
27162822-C-T 25016675-C-T P1_g3 ***
27185997-G-T 25039850-G-T P1_g3 ***
27203969-G-T 25057822-G-T P1_g3 ***
27214278-A-T 25068131-A-T P1_g3 ***
27228679-G-A 25082532-G-A P1_g3 ***
27231232-T-C 25085085-T-C P1_g3 ***
27234606-C-A 25088459-C-A P1_g3 ***
27248289-C-T 25102142-C-T P1_g3 ***
27317761-C-T 25171614-C-T P1_g3 ***
27346362-G-A 25200215-G-A P1_g3 ***
27353074-A-C 25206927-A-C P1_g3 ***
27526850-A-C 25380703-A-C P1_Y2 ***
27562722-C-G 25416575-C-G P1_Y2 ***
27576876-C-T 25430729-C-T P1_Y2 ***
27586134-G-T 25439987-G-T P1_Y2 ***
27586182-G-T 25440035-G-T P1_Y2 ***
27641006-T-C 25494859-T-C P1_Y2 ***
27663532-G-T 25517385-G-T P1_Y2 ***
27676812-T-C 25530665-T-C P1_Y2 ***
27692663-A-T 25546516-A-T P1_Y2 ***
27758128-T-C 25611981-T-C P1_Y2 ***
27809198-G-A 25663051-G-A P1_Y2 ***
27810760-T-G 25664613-T-G P1_Y2 ***
27834485-C-A 25688338-C-A P1_Y2 ***
27841013-G-A 25694866-G-A P1_Y2 ***
27841567-C-T 25695420-C-T P1_Y2 ***
27861869-G-T 25715722-G-T P1_Y2 ***
27883941-G-T 25737794-G-T P1_Y2 ***
27915781-C-A 25769634-C-A P1_Y2 ***
27935160-A-T 25789013-A-T P1_Y2 ***
28019930-G-A 25873783-G-A P1_Y2 ***
28076602-T-C 25930455-T-C P1_Y2 ***
28076608-C-T 25930461-C-T P1_Y2 ***
28118503-G-A 25972356-G-A P1_b4 ***
28120115-A-T 25973968-A-T P1_b4 ***
28155091-T-C 26008944-T-C P1_b4 ***
28168786-G-A 26022639-G-A P1_b4 ***
28190648-A-G 26044501-A-G P1_b4 ***
28191811-C-A 26045664-C-A P1_b4 ***
28253372-G-A 26107225-G-A P1_b4 ***
28261782-A-G 26115635-A-G P1_b4 ***
28301497-C-A 26155350-C-A P1_b4 ***
28417144-G-A 26270997-G-A P1_gr2 ***
28438244-G-T 26292097-G-T P1_gr2 ***
28491691-T-C 26345544-T-C ***
28549491-G-A 26403344-G-A ***
28665775-T-A 26519628-T-A ***
58819474-A-G 56771397-T-C ***
58820159-G-T 56770712-C-A ***
58823407-A-C 56767464-T-G ***
58823500-A-T 56767371-T-A ***
58824926-A-T 56765945-T-A ***
58830308-C-G 56760563-G-C ***
58833208-G-C 56757663-C-G ***
58840760-C-G 56750111-G-C ***
58840770-C-A 56750101-G-T ***
58840778-T-C 56750093-A-G ***
58842016-T-C 56748855-A-G ***
58842075-A-C 56748796-T-G ***
58844658-C-T 56746213-G-A ***
58844676-C-T 56746195-G-A ***
58846400-C-T 56744471-G-A ***
58855318-C-A 56735553-G-T ***
58855320-T-C 56735551-A-G ***
58855340-T-C 56735531-A-G ***
58859644-T-A 56731227-A-T ***
58861745-A-C 56729126-T-G ***
58862532-T-A 56728339-A-T ***
58862549-G-T 56728322-C-A ***
58863129-A-T 56727742-T-A ***
58863881-C-T 56726990-G-A ***
58865458-G-T 56725413-C-A ***
58867146-G-T 56723725-C-A ***
58876802-T-A 56714069-A-T ***
58887653-A-G 56703218-T-C ***
58890644-T-A 56700227-A-T ***
58892829-T-G 56698042-A-C ***
58899218-G-A 56691653-C-T ***
58899798-G-C 56691073-C-G ***
58901239-T-G 56689632-A-C ***
58907099-C-T 56683772-G-A ***
58999124-T-C 56852977-T-C ***
13471860-TT-CTC 11316184-TT-CTC ***
22287292-CA-AT 20125406-CA-AT DYZ19 ***
13535681-A-ATG 11380005-A-ATG 9×TG***
5387429-TC-T 5519388-TC-T ***
13459496-TTC-ATT 11303820-TTC-ATT ***
28747702-TTCA-T 26601555-TTCA-T ***
3131168-A-AGATT 3263127-A-AGATT ***
3550573-TCA-CC 3682532-TCA-CC ***
3930563-GTATATATATA-G 4062522-GTATATATATA-G 21×TA***
5415304-A-ATCTG 5547263-A-ATCTG ***
6226034-TTCTTTCTA-T 6357993-TTCTTTCTA-T IR3_Dst ***
7336698-G-GATAGATAGATAT 7468657-G-GATAGATAGATAT ***
7573143-TC-T 7705102-TC-T ***
7907526-G-GA 8039485-G-GA ***
8125032-G-GAAAA 8256991-G-GAAAA ***
8125040-G-GAAAA 8256999-G-GAAAA ***
8125070-A-AGAAGG 8257029-A-AGAAGG ***
8498338-CAAAAA-C 8630297-CAAAAA-C 16×A***
10041433-A-AGT 10203824-A-AGT ***
13445360-GACAAAA-G 11289684-GACAAAA-G ***
13461062-GTAGG-ATAGA 11305386-GTAGG-ATAGA ***
13470520-TGG-CGA 11314844-TGG-CGA ***
13470544-CA-TG 11314868-CA-TG ***
13470557-CCAGTGTCCATC-ATTGAGTGCGTG 11314881-CCAGTGTCCATC-ATTGAGTGCGTG ***
13470587-GC-AA 11314911-GC-AA ***
13470594-GCG-ACA 11314918-GCG-ACA ***
13470626-AC-CG 11314950-AC-CG ***
13488186-GCCCAGA-TCCAAGG 11332510-GCCCAGA-TCCAAGG ***
13488311-CCG-ACA 11332635-CCG-ACA ***
13488324-CGCCC-TACCG 11332648-CGCCC-TACCG ***
13488362-CAGGCATC-AAGACATT 11332686-CAGGCATC-AAGACATT ***
13489202-CCTTCG-TGTAAT 11333526-CCTTCG-TGTAAT ***
13489233-CT-AC 11333557-CT-AC ***
13489635-AC-CA 11333959-AC-CA ***
13740728-A-AAATGG 11585052-A-AAATGG ***
13838169-A-ATGGAC 11717463-A-ATGGAC ***
13936206-A-AAGAC 11815500-A-AAGAC ***
14866143-G-GTTTT 12754213-G-GTTTT ***
14937863-C-CTTTTCTTTTA 12825938-C-CTTTTCTTTTA ***
14981859-TTCCTTCCT-A 12869927-TTCCTTCCT-A ***
15047300-T-TC 12935391-T-TC ***
16464533-TC-T 14352653-TC-T ***
16809479-A-AGATT 14697599-A-AGATT ***
17275764-A-AAGGGG 15163884-A-AAGGGG ***
17275765-A-AGGGAG 15163885-A-AGGGAG ***
17275777-G-GGAAGT 15163897-G-GGAAGT ***
17700080-CTCTTGT-TTCTCAC 15588200-CTCTTGT-TTCTCAC ***
18190399-GA-AT 16078519-GA-AT ***
18393234-A-ATCTT 16281354-A-ATCTT P6_Gap ***
19346482-C-CTTTCTTTA 17234602-C-CTTTCTTTA ***
19372323-T-TAGAC 17260443-T-TAGAC ***
19412012-G-GAAAA 17300132-G-GAAAA ***
19425267-TCA-AGT 17313387-TCA-AGT ***
19425280-CA-GG 17313400-CA-GG ***
21251811-C-CA 19089925-C-CA ***
22287259-CTTC-GTTT 20125373-CTTC-GTTT DYZ19 ***
22297109-GA-CC 20135223-GA-CC DYZ19 ***
22330231-TGGA-CGGC 20168345-TGGA-CGGC DYZ19 ***
22330277-TTGGT-CTTAC 20168391-TTGGT-CTTAC DYZ19 ***
22341304-ACCGGTGA-TACGGAGG 20179418-ACCGGTGA-TACGGAGG DYZ19 ***
22341364-CCAGG-ACAGA 20179478-CCAGG-ACAGA DYZ19 ***
22346873-GG-AA 20184987-GG-AA DYZ19 ***
22346882-AGTCTGGCA-CTTCGGGCC 20184996-AGTCTGGCA-CTTCGGGCC DYZ19 ***
22422085-GGGTG-CGGTA 20260199-GGGTG-CGGTA DYZ19 ***
22435708-GCAG-ACAA 20273822-GCAG-ACAA DYZ19 ***
22503526-CT-AC 20341640-CT-AC DYZ19 ***
22503610-GTGTT-CTGTC 20341724-GTGTT-CTGTC DYZ19 ***
22996969-G-GATATATAT 20835083-G-GATATATAT 21×AT***
24264990-GG-CT 22118843-GG-CT P3_b1 ***
24425341-A-ATACT 22279194-A-ATACT ***
24447129-A-AAGAG 22300982-A-AAGAG ***
25323011-CTTTT-C 23176864-CTTTT-C P2_r1 30×T***
25995484-ACAGGAG-A 23849337-ACAGGAG-A P1_Y1 ***
26138361-CA-C 23992214-CA-C P1_Y1 10×A***
26344249-CAAA-C 24198102-CAAA-C P1_Y1 14×A***
26810646-GCCCA-CCCCG 24664499-GCCCA-CCCCG P1_g2 ***
28225579-GTTGT-TTTG 26079432-GTTGT-TTTG P1_b4 ***
58846313-AG-A 56744555-TC-T ***
58855315-TTCCAT-CTGCTCTCAAC 56735551-ATGGAA-GTTGAGAGCAG ***
58858901-CCATTCCATTCCATTG-C 56731937-GTGCAATGGAATGGAA-G ***
58874750-CTTC-TTTG 56716118-GAAG-CAAA ***
58912874-ATTCG-TTTCT 56677993-CGAAT-AGAAA ***
58974185-TG-CC 56828038-TG-CC ***
58979990-C-TCCATCCCACT 56833843-C-TCCATCCCACT 4×CCACT***
59008780-TTTA-T 56862633-TTTA-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.