O'Donoghue
FTDNA: 365045, BigY2: 365045Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 365045 | BigY2 365045 |
---|---|---|---|---|---|---|---|---|---|
24244317-T-C | 22098170-T-C | P3_b1 | *** | A* | |||||
23631643-A-G | 21469757-A-G | FGC39863 | Y | Y | + | + | |||
14987939-ATTGCCT-A | 12876005-ATTGCCT-A | + | + | ||||||
15357167-A-C | 13245286-A-C | BY101086 | Y | Y | + | + | |||
15537926-T-C | 13426046-T-C | BY102348 | Y | Y | + | + | |||
17948989-C-A | 15837109-C-A | BY118659 | Y | Y | + | + | |||
22469442-G-T | 20307556-G-T | FGC81712 | DYZ19 | ** | + | ||||
22275259-T-C | 20113373-T-C | BY215643 | DYZ19 | *** | * | ||||
18951471-A-G | 16839591-A-G | CTS9536 | ** | ** | |||||
13475473-G-A | 11319797-G-A | ** | |||||||
27791892-T-C | 25645745-T-C | A6209 A6168 | P1_Y2 | ** | |||||
6365198-G-A | 6497157-G-A | ** | |||||||
23190124-C-T | 21028238-C-T | FT314875 | ** | ||||||
13722412-T-A | 11566736-T-A | ** | |||||||
21555532-C-A | 19393646-C-A | ** | |||||||
15435159-C-A | 13323279-C-A | ** | |||||||
10959844-C-A | ** | ||||||||
6981371-G-A | 7113330-G-A | ** | |||||||
6981385-A-G | 7113344-A-G | ** | |||||||
6981401-A-G | 7113360-A-G | ** | |||||||
17023415-C-A | 14911535-C-A | ** | |||||||
10840602-G-T | ** | ||||||||
10840841-C-A | ** | ||||||||
21780429-C-A | ** | ||||||||
28660435-C-A | 26514288-C-A | ** | |||||||
21700595-GAAAAA-G | 19538709-GAAAAA-G | 17×A | ** | ||||||
3346954-C-A | 3478913-C-A | ** | |||||||
10776127-T-TTTCTC | ** | ||||||||
10776148-T-A | ** | ||||||||
10776156-A-G | ** | ||||||||
14550763-C-A | 12438964-C-A | ** | |||||||
7312614-AAGGG-A | 7444573-AAGGG-A | 4×AGGG | ** | ||||||
10932515-C-CATTG | ** | ||||||||
7248055-C-A | 7380014-C-A | ** | |||||||
16432874-C-A | 14320994-C-A | ** | |||||||
6147442-G-T | 6279401-G-T | IR3_Dst | ** | ||||||
15699906-C-A | 13588026-C-A | ** | |||||||
28764182-C-A | 26618035-C-A | FT285325 | ** | ||||||
14351199-C-A | 12230494-C-A | ** | |||||||
14474533-C-A | 12353802-C-A | ** | |||||||
6975996-C-A | 7107955-C-A | ** | |||||||
10667124-C-A | ** | ||||||||
18838929-C-A | 16727049-C-A | ** | |||||||
10826583-C-CTGTTG | ** | ||||||||
10787408-C-A | FT431204 | ** | |||||||
17367795-C-G | 15255915-C-G | ** | |||||||
14518313-C-CA | 12406514-C-CA | 9×A | ** | ||||||
10845379-G-T | ** | ||||||||
24601760-T-TG | 22455613-T-TG | P3_t2 | ** | ||||||
18895705-C-A | 16783825-C-A | ** | |||||||
11642944-C-G | ** | ||||||||
28776215-C-A | 26630068-C-A | ** | |||||||
15557051-AG-A | 13445171-AG-A | ** | |||||||
7063802-C-A | 7195761-C-A | ** | |||||||
10991207-CTCCAT-C | ** | ||||||||
15870722-C-A | 13758842-C-A | ** | |||||||
18993342-C-A | 16881462-C-A | ** | |||||||
21899742-C-A | 19737856-C-A | ** | |||||||
10018030-C-A | 10180421-C-A | ** | |||||||
28645907-C-A | 26499760-C-A | ** | |||||||
5059667-C-A | 5191626-C-A | ** | |||||||
14267200-C-A | 12146494-C-A | ** | |||||||
21141391-C-A | 18979505-C-A | ** | |||||||
2842990-C-A | 2974949-C-A | ** | |||||||
14226583-C-A | 12105877-C-A | ** | |||||||
14147962-G-A | 12027256-G-A | ** | |||||||
7764505-C-A | 7896464-C-A | ** | |||||||
13475475-G-T | 11319799-G-T | ** | |||||||
3073839-C-A | 3205798-C-A | ** | |||||||
8154133-C-A | 8286092-C-A | ** | |||||||
22489789-C-A | 20327903-C-A | DYZ19 | ** | ||||||
6830480-C-A | 6962439-C-A | ** | |||||||
16015225-C-A | 13903345-C-A | ** | |||||||
28782905-C-A | 26636758-C-A | ** | |||||||
13507071-A-G | 11351395-A-G | ** | |||||||
6479183-C-A | 6611142-C-A | ** | |||||||
7301666-C-A | 7433625-C-A | ** | |||||||
10840851-C-A | ** | ||||||||
19007812-C-A | 16895932-C-A | ** | |||||||
14226609-C-A | 12105903-C-A | ** | |||||||
17629840-T-G | 15517960-T-G | ** | |||||||
7043600-G-T | 7175559-G-T | ** | |||||||
23455060-T-C | 21293174-T-C | ** | |||||||
15912055-CTTTTTTTT-C | 13800175-CTTTTTTTT-C | 21×T | ** | ||||||
13642949-T-G | 11487273-T-G | ** | |||||||
9826180-C-A | 9988571-C-A | ** | |||||||
19412472-C-A | 17300592-C-A | ** | |||||||
6981384-C-A | 7113343-C-A | ** | |||||||
10915072-G-T | ** | ||||||||
10878488-C-A | ** | ||||||||
23808004-C-A | 21646118-C-A | ** | |||||||
23723646-C-A | 21561760-C-A | ** | |||||||
15557063-G-A | 13445183-G-A | ** | |||||||
11026929-C-A | ** | ||||||||
10915058-T-G | ** | ||||||||
10915062-G-C | ** | ||||||||
18753357-G-T | 16641477-G-T | ** | |||||||
21154567-C-A | 18992681-C-A | ** | |||||||
21926582-C-A | 19764696-C-A | ** | |||||||
8213980-G-A | 8345939-G-A | ** | |||||||
15641691-C-A | 13529811-C-A | ** | |||||||
9773626-C-A | 9936017-C-A | ** | |||||||
13921589-G-A | 11800883-G-A | ** | |||||||
18997098-C-A | 16885218-C-A | FT396405 | ** | ||||||
9493631-C-A | 9656022-C-A | ** | |||||||
3592663-A-G | 3724622-A-G | ** | |||||||
6752597-C-A | 6884556-C-A | ** | |||||||
28521676-C-A | 26375529-C-A | ** | |||||||
16033477-C-A | 13921597-C-A | ** | |||||||
13226723-T-G | 11071047-T-G | ** | |||||||
21824783-T-G | 19662897-T-G | ** | |||||||
16180383-C-A | 14068503-C-A | FTA11338 | ** | ||||||
5873532-C-A | 6005491-C-A | ** | |||||||
4540241-C-A | 4672200-C-A | ** | |||||||
14295234-C-A | 12174528-C-A | ** | |||||||
10915075-A-C | ** | ||||||||
19544129-C-A | 17432249-C-A | ** | |||||||
5761461-C-A | 5893420-C-A | ** | |||||||
10880868-C-A | ** | ||||||||
10783705-C-A | ** | ||||||||
16905837-C-A | 14793957-C-A | ** | |||||||
56823087-A-G | ** | ||||||||
7228452-C-A | 7360411-C-A | ** | |||||||
4701315-G-T | 4833274-G-T | ** | |||||||
10764364-C-A | ** | ||||||||
21824915-C-A | 19663029-C-A | ** | |||||||
24875524-T-A | 22729377-T-A | g1 | ** | ||||||
16865298-C-A | 14753418-C-A | ** | |||||||
28608507-C-A | 26462360-C-A | ** | |||||||
21427073-C-A | 19265187-C-A | ** | |||||||
10964566-C-A | ** | ||||||||
28485830-C-A | 26339683-C-A | ** | |||||||
11675586-C-A | ** | ||||||||
6454636-C-A | 6586595-C-A | ** | |||||||
7969486-G-T | 8101445-G-T | ** | |||||||
7860150-C-A | 7992109-C-A | ** | |||||||
11002214-C-A | ** | ||||||||
11665418-T-C | ** | ||||||||
14147969-C-A | 12027263-C-A | ** | |||||||
18185180-C-A | 16073300-C-A | FTB56754 | ** | ||||||
28556209-C-A | 26410062-C-A | ** | |||||||
14848945-C-A | 12737011-C-A | ** | |||||||
5688515-C-A | 5820474-C-A | ** | |||||||
8379498-C-A | 8511457-C-A | ** | |||||||
14100346-C-A | 11979640-C-A | ** | |||||||
14175060-C-A | 12054354-C-A | ** | |||||||
10693058-C-A | ** | ||||||||
4976074-T-G | 5108033-T-G | ** | |||||||
11035302-C-A | ** | ||||||||
7699133-C-A | 7831092-C-A | FTA7307 | ** | ||||||
3833632-G-A | 3965591-G-A | ** | |||||||
21394595-T-C | 19232709-T-C | ** | |||||||
10809094-GTTTCTTTCGA-G | ** | ||||||||
5275536-T-G | 5407495-T-G | ** | |||||||
15927860-C-A | 13815980-C-A | ** | |||||||
21084508-G-A | 18922622-G-A | ** | |||||||
28773091-C-A | 26626944-C-A | ** | |||||||
8080680-C-A | 8212639-C-A | ** | |||||||
14009566-C-A | 11888860-C-A | ** | |||||||
7160815-C-A | 7292774-C-A | ** | |||||||
18036001-C-A | 15924121-C-A | FT30722 | ** | ||||||
13255927-C-A | 11100251-C-A | ** | |||||||
14986085-C-A | 12874153-C-A | ** | |||||||
8697416-C-A | 8829375-C-A | ** | |||||||
2649708-C-A | 2781667-C-A | ** | |||||||
2707440-T-C | 2839399-T-C | ** | |||||||
2708132-T-C | 2840091-T-C | ** | |||||||
2773142-T-C | 2905101-T-C | ** | |||||||
2773753-G-T | 2905712-G-T | ** | |||||||
2788551-C-T | 2920510-C-T | ** | |||||||
2788597-C-A | 2920556-C-A | ** | |||||||
2905849-T-C | 3037808-T-C | ** | |||||||
2995657-A-C | 3127616-A-C | ** | |||||||
2995780-T-C | 3127739-T-C | ** | |||||||
2995811-G-C | 3127770-G-C | ** | |||||||
3011577-T-C | 3143536-T-C | ** | |||||||
3012737-T-C | 3144696-T-C | ** | |||||||
3015900-G-T | 3147859-G-T | ** | |||||||
3347963-G-T | 3479922-G-T | ** | |||||||
3359763-G-T | 3491722-G-T | ** | |||||||
3367098-T-C | 3499057-T-C | ** | |||||||
3389247-C-G | 3521206-C-G | ** | |||||||
3472840-C-A | 3604799-C-A | ** | |||||||
3593232-GT-G | 3725191-GT-G | ** | |||||||
3599046-C-A | 3731005-C-A | ** | |||||||
3680426-C-A | 3812385-C-A | ** | |||||||
3696590-A-T | 3828549-A-T | ** | |||||||
3834565-T-G | 3966524-T-G | ** | |||||||
3834599-T-G | 3966558-T-G | ** | |||||||
3837299-T-C | 3969258-T-C | ** | |||||||
3865450-A-T | 3997409-A-T | ** | |||||||
3922667-C-A | 4054626-C-A | ** | |||||||
3997083-CA-C | 4129042-CA-C | ** | |||||||
4016308-C-T | 4148267-C-T | ** | |||||||
4075682-C-G | 4207641-C-G | ** | |||||||
4075704-T-A | 4207663-T-A | ** | |||||||
4075843-A-T | 4207802-A-T | 8×AAAC | ** | ||||||
4102981-T-C | 4234940-T-C | ** | |||||||
4107788-C-A | 4239747-C-A | ** | |||||||
4126528-C-A | 4258487-C-A | ** | |||||||
4437837-G-A | 4569796-G-A | ** | |||||||
4616669-A-G | 4748628-A-G | ** | |||||||
4616678-C-G | 4748637-C-G | ** | |||||||
4656418-A-T | 4788377-A-T | ** | |||||||
4920087-C-A | 5052046-C-A | ** | |||||||
5048368-G-T | 5180327-G-T | ** | |||||||
5243470-C-A | 5375429-C-A | ** | |||||||
5275549-A-T | 5407508-A-T | ** | |||||||
5275564-T-C | 5407523-T-C | FT308314 | ** | ||||||
5275624-A-T | 5407583-A-T | ** | |||||||
5444024-T-C | 5575983-T-C | ** | |||||||
5448729-T-C | 5580688-T-C | ** | |||||||
5572475-T-C | 5704434-T-C | FT341991 | ** | ||||||
5613616-T-C | 5745575-T-C | ** | |||||||
5728279-C-A | 5860238-C-A | ** | |||||||
6090434-C-T | 6222393-C-T | ** | |||||||
6092008-C-A | 6223967-C-A | ** | |||||||
6247108-G-T | 6379067-G-T | IR3_Dst | ** | ||||||
6365193-A-C | 6497152-A-C | ** | |||||||
6365220-T-C | 6497179-T-C | ** | |||||||
6401660-C-A | 6533619-C-A | ** | |||||||
6519532-C-A | 6651491-C-A | ** | |||||||
6585118-A-G | 6717077-A-G | ** | |||||||
6765805-C-A | 6897764-C-A | ** | |||||||
6791206-C-A | 6923165-C-A | ** | |||||||
6795316-A-T | 6927275-A-T | ** | |||||||
6832115-C-A | 6964074-C-A | ** | |||||||
6874862-A-G | 7006821-A-G | ** | |||||||
6981400-A-G | 7113359-A-G | ** | |||||||
6981406-G-A | 7113365-G-A | ** | |||||||
7020530-C-A | 7152489-C-A | ** | |||||||
7048151-A-T | 7180110-A-T | ** | |||||||
7053852-T-C | 7185811-T-C | ** | |||||||
7099236-C-A | 7231195-C-A | ** | |||||||
7108554-C-A | 7240513-C-A | ** | |||||||
7179939-C-A | 7311898-C-A | ** | |||||||
7309153-C-T | 7441112-C-T | ** | |||||||
7319229-C-A | 7451188-C-A | ** | |||||||
7362043-T-C | 7494002-T-C | ** | |||||||
7390278-C-A | 7522237-C-A | ** | |||||||
7418580-G-T | 7550539-G-T | ** | |||||||
7578985-G-T | 7710944-G-T | ** | |||||||
7631984-G-T | 7763943-G-T | ** | |||||||
7783160-C-A | 7915119-C-A | ** | |||||||
8110706-G-A | 8242665-G-A | FT19650 | ** | ||||||
8230281-G-A | 8362240-G-A | ** | |||||||
8296864-A-G | 8428823-A-G | ** | |||||||
8296906-C-G | 8428865-C-G | ** | |||||||
8296937-A-G | 8428896-A-G | ** | |||||||
8697389-G-T | 8829348-G-T | ** | |||||||
8786833-C-A | 8918792-C-A | ** | |||||||
8901211-G-A | 9033170-G-A | ** | |||||||
8913136-T-C | 9045095-T-C | ** | |||||||
9079810-A-C | 9242201-A-C | ** | |||||||
9508493-A-C | 9670884-A-C | ** | |||||||
9535037-C-A | 9697428-C-A | IR3_Prx | ** | ||||||
9580972-TA-T | 9743363-TA-T | IR3_Prx | ** | ||||||
9735670-G-T | 9898061-G-T | IR3_Prx | ** | ||||||
9839528-A-G | 10001919-A-G | ** | |||||||
9908350-G-T | 10070741-G-T | ** | |||||||
9966119-A-G | 10128510-A-G | ** | |||||||
10019762-T-C | 10182153-T-C | ** | |||||||
10658951-C-A | ** | ||||||||
10659825-A-G | ** | ||||||||
10661592-T-C | ** | ||||||||
10662684-C-G | ** | ||||||||
10664294-C-A | ** | ||||||||
10755006-C-A | ** | ||||||||
10770085-G-T | ** | ||||||||
10770568-C-A | ** | ||||||||
10787475-T-A | ** | ||||||||
10792217-T-C | ** | ||||||||
10809041-T-A | ** | ||||||||
10813757-T-A | ** | ||||||||
10820468-C-G | ** | ||||||||
10828992-C-A | ** | ||||||||
10840819-T-G | ** | ||||||||
10860451-C-A | ** | ||||||||
10876166-C-T | ** | ||||||||
10878987-T-G | ** | ||||||||
10881765-C-G | ** | ||||||||
10884916-C-G | ** | ||||||||
10898435-A-C | ** | ||||||||
10949637-C-A | ** | ||||||||
10960889-C-A | ** | ||||||||
10968211-C-T | ** | ||||||||
10969435-C-A | ** | ||||||||
10976128-A-T | ** | ||||||||
10982144-C-A | ** | ||||||||
11013902-C-A | ** | ||||||||
11013999-T-G | ** | ||||||||
11014006-C-G | ** | ||||||||
11015929-ACTCC-A | ** | ||||||||
11018475-C-T | ** | ||||||||
11018615-C-A | ** | ||||||||
11023044-C-A | ** | ||||||||
13197932-T-C | 11042256-T-C | FT41906 | ** | ||||||
13227886-C-T | 11072210-C-T | ** | |||||||
13238215-C-A | 11082539-C-A | ** | |||||||
13239659-T-A | 11083983-T-A | ** | |||||||
13259080-A-G | 11103404-A-G | ** | |||||||
13292012-C-A | 11136336-C-A | ** | |||||||
13502629-C-A | 11346953-C-A | ** | |||||||
13507072-A-G | 11351396-A-G | ** | |||||||
13523575-A-C | 11367899-A-C | ** | |||||||
13571729-G-T | 11416053-G-T | ** | |||||||
13573330-G-A | 11417654-G-A | ** | |||||||
13620434-G-A | 11464758-G-A | ** | |||||||
13624211-C-G | 11468535-C-G | ** | |||||||
13624722-C-A | 11469046-C-A | ** | |||||||
13624749-G-T | 11469073-G-T | ** | |||||||
13644743-A-T | 11489067-A-T | ** | |||||||
13722438-G-A | 11566762-G-A | ** | |||||||
13722518-C-G | 11566842-C-G | ** | |||||||
11656776-C-A | ** | ||||||||
11668262-T-A | ** | ||||||||
11669634-G-T | ** | ||||||||
13855843-TG-T | 11735137-TG-T | ** | |||||||
13860878-T-A | 11740172-T-A | ** | |||||||
13896767-A-T | 11776061-A-T | ** | |||||||
13912380-C-A | 11791674-C-A | ** | |||||||
13927503-G-C | 11806797-G-C | ** | |||||||
13935065-C-A | 11814359-C-A | ** | |||||||
13976406-A-C | 11855700-A-C | ** | |||||||
13987203-A-G | 11866497-A-G | ** | |||||||
13998180-T-C | 11877474-T-C | ** | |||||||
14088970-C-A | 11968264-C-A | ** | |||||||
14147974-C-T | 12027268-C-T | ** | |||||||
14180745-ACAATGCAC-A | 12060039-ACAATGCAC-A | ** | |||||||
14212175-A-T | 12091469-A-T | ** | |||||||
14227738-A-G | 12107032-A-G | ** | |||||||
14255090-C-T | 12134384-C-T | ** | |||||||
14300800-C-A | 12180094-C-A | FTB80895 | ** | ||||||
14350194-C-A | 12229489-C-A | ** | |||||||
14458392-C-A | 12337665-C-A | ** | |||||||
14470361-C-A | 12349630-C-A | ** | |||||||
14514018-C-A | 12402223-C-A | ** | |||||||
14539653-A-G | 12427854-A-G | ** | |||||||
14549253-T-C | 12437454-T-C | ** | |||||||
14572521-A-T | 12460721-A-T | ** | |||||||
14719598-GTC-G | 12607666-GTC-G | ** | |||||||
14719619-G-A | 12607687-G-A | ** | |||||||
14792848-C-A | 12680919-C-A | ** | |||||||
14799915-C-A | 12687986-C-A | ** | |||||||
14911965-G-A | 12800032-G-A | ** | |||||||
14966481-C-A | 12854556-C-A | ** | |||||||
14977334-C-G | 12865409-C-G | ** | |||||||
14977343-G-C | 12865418-G-C | ** | |||||||
15168894-T-C | 13056980-T-C | ** | |||||||
15171573-C-A | 13059659-C-A | ** | |||||||
15221912-A-G | 13109998-A-G | ** | |||||||
15234007-C-G | 13122093-C-G | ** | |||||||
15399990-T-G | 13288110-T-G | ** | |||||||
15402962-C-A | 13291082-C-A | ** | |||||||
15403548-A-T | 13291668-A-T | ** | |||||||
15445363-C-G | 13333483-C-G | ** | |||||||
15445550-C-G | 13333670-C-G | ** | |||||||
15455005-G-A | 13343125-G-A | ** | |||||||
15536221-G-A | 13424341-G-A | ** | |||||||
15575026-T-C | 13463146-T-C | ** | |||||||
15595239-C-A | 13483359-C-A | ** | |||||||
15608217-T-C | 13496337-T-C | ** | |||||||
15680090-C-A | 13568210-C-A | ** | |||||||
15758713-G-A | 13646833-G-A | ** | |||||||
15758720-A-C | 13646840-A-C | ** | |||||||
15922519-T-C | 13810639-T-C | ** | |||||||
15937034-G-T | 13825154-G-T | ** | |||||||
16059963-T-C | 13948083-T-C | ** | |||||||
16060516-A-G | 13948636-A-G | ** | |||||||
16171473-T-A | 14059593-T-A | ** | |||||||
16171480-T-C | 14059600-T-C | ** | |||||||
16241260-C-A | 14129380-C-A | ** | |||||||
16241669-C-A | 14129789-C-A | ** | |||||||
16267175-C-A | 14155295-C-A | ** | |||||||
16364025-G-T | 14252145-G-T | ** | |||||||
16470168-A-G | 14358288-A-G | ** | |||||||
16479990-T-A | 14368110-T-A | ** | |||||||
16502435-G-T | 14390555-G-T | ** | |||||||
16515891-T-A | 14404011-T-A | ** | |||||||
16554726-C-A | 14442846-C-A | ** | |||||||
16605394-C-A | 14493514-C-A | ** | |||||||
16640270-A-G | 14528390-A-G | ** | |||||||
16689846-A-C | 14577966-A-C | ** | |||||||
16703735-T-G | 14591855-T-G | ** | |||||||
16981191-C-A | 14869311-C-A | ** | |||||||
17012912-C-A | 14901032-C-A | ** | |||||||
17128002-T-G | 15016122-T-G | ** | |||||||
17159441-G-C | 15047561-G-C | ** | |||||||
17187484-T-A | 15075604-T-A | ** | |||||||
17199484-G-T | 15087604-G-T | ** | |||||||
17231452-C-A | 15119572-C-A | ** | |||||||
17257243-C-A | 15145363-C-A | ** | |||||||
17376104-T-A | 15264224-T-A | ** | |||||||
17379892-G-A | 15268012-G-A | ** | |||||||
17524090-T-C | 15412210-T-C | ** | |||||||
17561961-C-A | 15450081-C-A | ** | |||||||
17634778-T-C | 15522898-T-C | ** | |||||||
17644247-C-A | 15532367-C-A | ** | |||||||
17654059-C-A | 15542179-C-A | ** | |||||||
17715005-C-A | 15603125-C-A | ** | |||||||
17722808-C-T | 15610928-C-T | ** | |||||||
17787827-C-G | 15675947-C-G | ** | |||||||
17840296-C-A | 15728416-C-A | ** | |||||||
18136188-C-A | 16024308-C-A | ** | |||||||
18196405-G-C | 16084525-G-C | ** | |||||||
18447488-T-C | 16335608-T-C | P6_Dst | ** | ||||||
18547019-C-A | 16435139-C-A | ** | |||||||
18611790-G-A | 16499910-G-A | ** | |||||||
18647595-T-TA | 16535715-T-TA | ** | |||||||
18810704-G-T | 16698824-G-T | ** | |||||||
18810790-A-C | 16698910-A-C | ** | |||||||
18951482-A-G | 16839602-A-G | FTB82878 | ** | ||||||
18951486-G-C | 16839606-G-C | FT122420 | ** | ||||||
19041259-G-A | 16929379-G-A | ** | |||||||
19449052-C-T | 17337172-C-T | FT315407 | FT154835 | ** | |||||
19644771-C-A | 17532891-C-A | P5_Prx | ** | ||||||
19675549-G-T | 17563669-G-T | P5_Prx | ** | ||||||
19949567-G-T | 17837687-G-T | P5_Prx | ** | ||||||
19949607-T-G | 17837727-T-G | P5_Prx | ** | ||||||
19949629-A-C | 17837749-A-C | P5_Prx | ** | ||||||
19949637-G-C | 17837757-G-C | P5_Prx | ** | ||||||
20132249-C-A | 18020369-C-A | P5_Dst | ** | ||||||
20352234-A-T | 18190348-A-T | P5_Dst | ** | ||||||
20451434-A-AT | 18289548-A-AT | P5_Dst | ** | ||||||
20778636-C-T | 18616750-C-T | P4_Prx | ** | ||||||
20809751-C-A | 18647865-C-A | P4_Gap | ** | ||||||
21012302-C-A | 18850416-C-A | P4_Dst | ** | ||||||
21037481-C-A | 18875595-C-A | ** | |||||||
21084492-A-G | 18922606-A-G | ** | |||||||
21084494-G-A | 18922608-G-A | ** | |||||||
21153711-A-T | 18991825-A-T | ** | |||||||
21153739-A-C | 18991853-A-C | ** | |||||||
21154421-C-A | 18992535-C-A | ** | |||||||
21201700-T-C | 19039814-T-C | ** | |||||||
21248169-C-A | 19086283-C-A | ** | |||||||
21262215-C-A | 19100329-C-A | FGC58514 | ** | ||||||
21488729-G-T | 19326843-G-T | ** | |||||||
21491041-T-C | 19329155-T-C | ** | |||||||
21583820-A-G | 19421934-A-G | ** | |||||||
21584401-G-T | 19422515-G-T | ** | |||||||
21691953-G-A | 19530067-G-A | ** | |||||||
21742646-G-T | 19580760-G-T | ** | |||||||
21821491-A-T | 19659605-A-T | ** | |||||||
21945376-C-A | 19783490-C-A | ** | |||||||
21990424-T-G | 19828538-T-G | ** | |||||||
22011360-C-G | 19849474-C-G | ** | |||||||
22085972-C-A | 19924086-C-A | ** | |||||||
22124151-C-A | 19962265-C-A | ** | |||||||
22167263-G-C | 20005377-G-C | ** | |||||||
22205536-G-T | 20043650-G-T | ** | |||||||
22781001-TGGATATTAA-T | 20619115-TGGATATTAA-T | ** | |||||||
22963477-A-T | 20801591-A-T | ** | |||||||
23143010-A-G | 20981124-A-G | ** | |||||||
23143063-A-G | 20981177-A-G | ** | |||||||
23188560-C-A | 21026674-C-A | ** | |||||||
23350641-T-TG | 21188755-T-TG | ** | |||||||
23449141-C-A | 21287255-C-A | ** | |||||||
23579398-T-C | 21417512-T-C | ** | |||||||
23609300-G-C | 21447414-G-C | ** | |||||||
23745441-G-T | 21583555-G-T | ** | |||||||
23807578-CAAAAAAAA-C | 21645692-CAAAAAAAA-C | 21×A | ** | ||||||
23831391-C-T | 21669505-C-T | ** | |||||||
24416775-A-C | 22270628-A-C | ** | |||||||
24875524-T-TA | 22729377-T-TA | g1 | ** | ||||||
24875530-G-A | 22729383-G-A | g1 | ** | ||||||
24878818-G-A | 22732671-G-A | g1 | ** | ||||||
25732880-T-C | 23586733-T-C | P1_b3 | ** | ||||||
25964398-C-A | 23818251-C-A | BY226516 | P1_Y1 | ** | |||||
26409343-G-T | 24263196-G-T | P1_Y1 | ** | ||||||
26435216-C-A | 24289069-C-A | P1_Y1 | ** | ||||||
27543209-G-A | 25397062-G-A | P1_Y2 | ** | ||||||
28462199-A-C | 26316052-A-C | ** | |||||||
28462820-G-T | 26316673-G-T | ** | |||||||
28511345-A-G | 26365198-A-G | ** | |||||||
28521687-A-C | 26375540-A-C | ** | |||||||
28544942-A-G | 26398795-A-G | ** | |||||||
28625976-G-A | 26479829-G-A | ** | |||||||
28661699-G-T | 26515552-G-T | ** | |||||||
28691915-G-A | 26545768-G-A | ** | |||||||
28692146-G-T | 26545999-G-T | ** | |||||||
28715866-T-G | 26569719-T-G | ** | |||||||
28767123-C-G | 26620976-C-G | ** | |||||||
28771597-C-A | 26625450-C-A | ** | |||||||
28773884-C-A | 26627737-C-A | ** | |||||||
56827532-C-G | ** | ||||||||
56856179-C-A | ** | ||||||||
56862643-G-T | ** | ||||||||
22361031-G-T | 20199145-G-T | DYZ19 | *** | ||||||
28711550-G-A | 26565403-G-A | *** | |||||||
25012589-G-GT | 22866442-G-GT | g1 | 9×T | *** | |||||
20920882-GAAA-G | 18758996-GAAA-G | P4_Dst | 15×A | *** | |||||
10764571-ATTCC-A | *** | ||||||||
5957030-C-A | 6088989-C-A | *** | |||||||
56828593-C-A | *** | ||||||||
24961022-C-A | 22814875-C-A | g1 | *** | ||||||
19391703-AT-A,ATT | 17279823-AT-A,ATT | 14×T | *** | ||||||
56827312-G-T | *** | ||||||||
2888705-CAAA-C | 3020664-CAAA-C | 16×A | *** | ||||||
10789340-C-CATTAG | *** | ||||||||
28234398-TTA-T,TTATATA | 26088251-TTA-T,TTATATA | P1_b4 | 18×TA | *** | |||||
15476016-CAA-C | 13364136-CAA-C | 11×A | *** | ||||||
22893398-G-T | 20731512-G-T | *** | |||||||
2876695-C-A | 3008654-C-A | *** | |||||||
2881477-G-A | 3013436-G-A | *** | |||||||
4502925-G-T | 4634884-G-T | *** | |||||||
5576729-G-T | 5708688-G-T | *** | |||||||
7242603-G-A | 7374562-G-A | *** | |||||||
9960937-C-A | 10123328-C-A | *** | |||||||
10624618-C-A | *** | ||||||||
10764548-TTCAC-T,TTG | *** | ||||||||
10776409-C-T | *** | ||||||||
10828909-A-T | *** | ||||||||
10884999-T-C | *** | ||||||||
10900073-G-T | *** | ||||||||
10937479-C-A | *** | ||||||||
13859813-C-T | 11739107-C-T | *** | |||||||
14143515-C-A | 12022809-C-A | *** | |||||||
16277307-A-C | 14165427-A-C | *** | |||||||
17355457-C-A | 15243577-C-A | *** | |||||||
18398176-C-A | 16286296-C-A | P6_Gap | *** | ||||||
19048946-A-G | 16937066-A-G | *** | |||||||
19254669-C-A | 17142789-C-A | *** | |||||||
19461262-C-A | 17349382-C-A | *** | |||||||
21128224-A-T | 18966338-A-T | *** | |||||||
21455919-C-G | 19294033-C-G | *** | |||||||
26440463-T-C | 24294316-T-C | P1_Y1 | *** | ||||||
26834526-C-A | 24688379-C-A | P1_g2 | *** | ||||||
28649009-C-A | 26502862-C-A | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.