Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > DF49/S474 > Z2980 > Z2976 > DF23 > Z2961 > Z2956 > M222 > Z2959 > S568 > FGC440 > 11654265-A-G > FGC458

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
227877
FGC
3B2TN
Manual
Edits
22246419-A-C 20084533-A-C FGC40248 DYZ19 A++
58980250-A-T 56834103-A-T A*
13451018-C-G 11295342-C-G A*
5826249-T-A 5958208-T-A A*
5343414-T-A 5475373-T-A FGC40241 ++
7367424-T-C 7499383-T-C FGC40242 YY++
7411026-A-T 7542985-A-T FGC40243 YY++
7687370-G-C 7819329-G-C FGC40244 YY++
15314206-A-G 13202311-A-G FGC40246 YY++
19080222-A-T 16968342-A-T FGC40247 YY++
10831885-C-A FT433194 +
25088440-A-G 22942293-A-G BY2330 A8722 g1 *
22278614-A-G 20116728-A-G DYZ19 *
25940445-CTT-C 23794298-CTT-C P1_Y1 17×T**
8740664-G-GT 8872623-G-GT 10×T**
13201794-G-A 11046118-G-A **
3634112-A-T 3766071-A-T **
8176544-G-T 8308503-G-T **
8278926-G-A 8410885-G-A **
13201804-A-T 11046128-A-T **
13201836-T-C 11046160-T-C **
13201890-C-A 11046214-C-A **
14129457-G-A 12008751-G-A **
14736419-A-G 12624487-A-G ****
15098435-A-G 12986523-A-G **
15807481-A-G 13695601-A-G **
15962961-C-T 13851081-C-T **
21501074-C-T 19339188-C-T **
22551284-T-C 20389398-T-C **
26828316-A-T 24682169-A-T P1_g2 **
26828342-G-T 24682195-G-T P1_g2 **
14100350-T-TGAACGTGCAGCGCGCAGCAGC 11979644-T-TGAACGTGCAGCGCGCAGCAGC **
19127667-T-TACACAC 17015787-T-TACACAC 18×AC**
19842702-A-G 17730822-A-G P5_Prx **
18040390-C-T 15928510-C-T **
9753970-TAGATC-T 9916361-TAGATC-T **
9537700-T-TTGTC 9700091-T-TTGTC IR3_Prx **
19922815-GT-G 17810935-GT-G P5_Prx 12×T**
6293906-T-C 6425865-T-C IR3_Dst **
17245629-G-A 15133749-G-A **
19601050-G-T 17489170-G-T P5_Prx **
19609693-T-G 17497813-T-G P5_Prx **
20028040-A-T 17916160-A-T P5_Prx **
20108239-A-AATAT 17996359-A-AATAT P5_Dst 15×AT**
26305700-C-A 24159553-C-A P1_Y1 23×A**
22502932-G-A 20341046-G-A DYZ19 ***
58908822-A-G 56682049-T-C ***
58916206-C-T 56674665-G-A ***
58823338-TTC-ATT 56767531-GAA-AAT ***
22364734-G-T 20202848-G-T DYZ19 ***
20124960-A-T 18013080-A-T P5_Dst ***
58823276-CCATTCCATCT-C 56767576-AATGGAATGAG-A ***
13736896-C-T 11581220-C-T ***
23519079-A-G 21357193-A-G ***
28787059-AC-A 26640912-AC-A ***
22234333-T-A 20072447-T-A DYZ19 ***
25466379-T-G 23320232-T-G P2_r2 ***
13115283-C-T 10604769-C-T ***
22329797-G-T 20167911-G-T DYZ19 ***
27161532-T-A 25015385-T-A P1_g3 ***
9502520-TGGGGGGAGGGGGGAG-T 9664911-TGGGGGGAGGGGGGAG-T ***
22358154-G-A 20196268-G-A DYZ19 ***
22358161-G-T 20196275-G-T DYZ19 ***
22358162-T-C 20196276-T-C DYZ19 ***
22364715-T-A 20202829-T-A DYZ19 ***
9301608-C-T 9463999-C-T ***
28678123-TGGAGGCTTCAGTATGACAGAAACTTCCTGAAGACTTCTCCTACTGAAGCCTCCTGTGTTGGAGGCTTCTCCTCCTGAAGAGCCTCCAACACA-T 26531976-TGGAGGCTTCAGTATGACAGAAACTTCCTGAAGACTTCTCCTACTGAAGCCTCCTGTGTTGGAGGCTTCTCCTCCTGAAGAGCCTCCAACACA-T ***
58908850-C-A 56682021-G-T ***
22311274-G-T 20149388-G-T DYZ19 ***
24862222-G-A 22716075-G-A IR1_R ***
27528910-C-A 25382763-C-A P1_Y2 ***
13733865-ACGAGCGCAA-TGGAGCGCAT 11578189-ACGAGCGCAA-TGGAGCGCAT ***
58890716-T-C 56700155-A-G ***
13201868-A-G 11046192-A-G ***
58903424-C-G 56687447-G-C ***
22344515-A-G 20182629-A-G DYZ19 ***
25215907-C-T 23069760-C-T P2_r1 ***
22308079-A-G 20146193-A-G DYZ19 ***
22344512-A-G 20182626-A-G DYZ19 ***
3457626-G-T 3589585-G-T ***
3603514-T-G 3735473-T-G ***
3786463-T-A 3918422-T-A ***
4089795-A-T 4221754-A-T ***
4291132-G-A 4423091-G-A ***
4291142-C-A 4423101-C-A ***
4430927-A-G 4562886-A-G ***
4683144-G-A 4815103-G-A ***
4683159-T-A 4815118-T-A ***
4683173-C-T 4815132-C-T ***
4683174-A-G 4815133-A-G ***
4683175-C-A 4815134-C-A ***
4683190-T-C 4815149-T-C ***
4683195-C-G 4815154-C-G ***
4683223-T-A 4815182-T-A ***
4699014-C-A 4830973-C-A ***
4822224-G-T 4954183-G-T ***
4842820-A-G 4974779-A-G ***
4909624-C-A 5041583-C-A ***
5009563-T-C 5141522-T-C ***
5130137-A-G 5262096-A-G ***
5837059-C-T 5969018-C-T ***
6107026-C-G 6238985-C-G ***
6192300-C-T 6324259-C-T IR3_Dst ***
6326781-A-T 6458740-A-T IR3_Dst ***
6549843-T-G 6681802-T-G ***
6551017-G-T 6682976-G-T ***
6591261-C-A 6723220-C-A ***
6637799-T-G 6769758-T-G ***
6686828-G-T 6818787-G-T ***
6902877-A-T 7034836-A-T ***
7195265-G-A 7327224-G-A ***
7490106-C-T 7622065-C-T IR1_L ***
7631307-C-T 7763266-C-T ***
7964937-C-T 8096896-C-T ***
8167358-G-A 8299317-G-A ***
8813765-A-T 8945724-A-T ***
9034252-T-G 9196643-T-G ***
9199529-A-C 9361920-A-C A19876 ***
9219552-T-G 9381943-T-G ***
9231197-G-T 9393588-G-T 8×T***
9298936-T-C 9461327-T-C ***
9298968-G-T 9461359-G-T ***
9303164-A-C 9465555-A-C ***
9335659-T-C 9498050-T-C ***
9410446-G-T 9572837-G-T ***
9536602-G-T 9698993-G-T IR3_Prx ***
9586703-C-A 9749094-C-A IR3_Prx ***
9682905-T-G 9845296-T-G IR3_Prx ***
9779302-A-G 9941693-A-G FGC41558 ***
10041584-A-T 10203975-A-T ***
13201829-C-T 11046153-C-T ***
13201880-C-T 11046204-C-T ***
13201893-A-T 11046217-A-T ***
13201895-T-C 11046219-T-C ***
13336873-G-T 11181197-G-T ***
13383684-G-A 11228008-G-A ***
13393258-T-C 11237582-T-C ***
13461108-A-G 11305432-A-G ***
13464307-T-C 11308631-T-C ***
13470462-A-T 11314786-A-T ***
13470465-C-A 11314789-C-A ***
13470482-G-T 11314806-G-T ***
13470534-G-T 11314858-G-T ***
13471075-C-T 11315399-C-T ***
13580730-C-T 11425054-C-T ***
13726823-G-A 11571147-G-A ***
13730826-C-T 11575150-C-T ***
13730829-C-A 11575153-C-A ***
13744476-C-A 11588800-C-A ***
13748572-G-A 11592896-G-A ***
14122509-G-T 12001803-G-T ***
14515188-T-A 12403393-T-A ***
14515290-G-T 12403495-G-T ***
14634355-G-C 12522424-G-C ***
14959959-A-T 12848034-A-T ***
15103252-C-T 12991340-C-T ***
15117243-G-A 13005330-G-A ***
15121436-C-A 13009523-C-A ***
15214441-C-T 13102527-C-T ***
15444910-T-A 13333030-T-A ***
15839196-C-T 13727316-C-T ***
15963224-G-T 13851344-G-T ***
16065912-T-C 13954032-T-C ***
16067818-A-T 13955938-A-T ***
16081738-A-T 13969858-A-T ***
16210722-G-T 14098842-G-T ***
16267062-C-A 14155182-C-A ***
16297361-A-T 14185481-A-T ***
16658399-A-C 14546519-A-C ***
16827132-T-G 14715252-T-G ***
17060977-T-C 14949097-T-C ***
17122867-G-T 15010987-G-T ***
17162294-G-T 15050414-G-T ***
17643892-G-A 15532012-G-A ***
17648559-A-G 15536679-A-G ***
17784750-A-G 15672870-A-G ***
18130877-A-T 16018997-A-T ***
18140295-T-C 16028415-T-C ***
18255882-T-A 16144002-T-A ***
18280659-C-A 16168779-C-A P6_Prx ***
18360920-T-G 16249040-T-G P6_Prx ***
18361419-C-A 16249539-C-A P6_Prx ***
18361514-G-A 16249634-G-A P6_Prx ***
18361556-T-A 16249676-T-A P6_Prx ***
18361560-T-A 16249680-T-A P6_Prx ***
18361567-G-A 16249687-G-A P6_Prx ***
18380887-G-T 16269007-G-T P6_Prx ***
18527337-T-G 16415457-T-G P6_Dst ***
18531631-C-T 16419751-C-T P6_Dst ***
18544200-C-T 16432320-C-T ***
18626611-A-C 16514731-A-C ***
18845993-C-A 16734113-C-A ***
18846008-T-C 16734128-T-C ***
18877734-A-C 16765854-A-C ***
18877882-C-A 16766002-C-A ***
18877933-T-A 16766053-T-A ***
18975181-T-C 16863301-T-C ***
19029823-C-A 16917943-C-A ***
19040318-T-C 16928438-T-C ***
19330760-G-A 17218880-G-A ***
19340026-G-T 17228146-G-T ***
19426761-C-T 17314881-C-T ***
19487491-G-T 17375611-G-T ***
19540893-G-T 17429013-G-T ***
19625942-A-G 17514062-A-G P5_Prx ***
19646962-C-T 17535082-C-T P5_Prx ***
19705846-G-A 17593966-G-A P5_Prx ***
19754356-C-A 17642476-C-A P5_Prx ***
19803131-T-C 17691251-T-C P5_Prx ***
19830187-G-T 17718307-G-T P5_Prx ***
19853713-T-A 17741833-T-A P5_Prx ***
19927035-G-T 17815155-G-T P5_Prx ***
20005039-A-T 17893159-A-T P5_Prx ***
20084593-A-T 17972713-A-T P5_Dst ***
20084638-G-T 17972758-G-T P5_Dst ***
20084640-G-T 17972760-G-T P5_Dst ***
20084748-C-T 17972868-C-T P5_Dst ***
20084849-G-T 17972969-G-T P5_Dst ***
20084888-C-T 17973008-C-T P5_Dst ***
20084906-C-T 17973026-C-T P5_Dst ***
20124971-T-C 18013091-T-C P5_Dst ***
20124972-G-A 18013092-G-A P5_Dst ***
20326430-C-T 18164544-C-T P5_Dst ***
20331294-A-G 18169408-A-G P5_Dst ***
20353076-G-A 18191190-G-A P5_Dst ***
20500806-A-G 18338920-A-G P5_Dst ***
20532799-C-A 18370913-C-A P5_Dst ***
20534065-T-A 18372179-T-A P5_Dst ***
20682919-C-A 18521033-C-A P4_Prx ***
20736761-A-C 18574875-A-C P4_Prx ***
20872423-T-C 18710537-T-C P4_Dst ***
20896063-T-C 18734177-T-C P4_Dst ***
20932612-G-A 18770726-G-A P4_Dst 17×A***
20942891-T-G 18781005-T-G P4_Dst ***
20980831-A-G 18818945-A-G P4_Dst ***
21030683-G-A 18868797-G-A P4_Dst ***
21056558-G-T 18894672-G-T ***
21537782-C-A 19375896-C-A ***
21829853-T-A 19667967-T-A ***
21829861-G-A 19667975-G-A ***
22085516-A-C 19923630-A-C ***
22153687-G-A 19991801-G-A ***
22248014-A-G 20086128-A-G DYZ19 ***
22292563-A-G 20130677-A-G DYZ19 ***
22292641-T-C 20130755-T-C DYZ19 ***
22297124-C-G 20135238-C-G DYZ19 ***
22297126-G-T 20135240-G-T DYZ19 ***
22311134-C-T 20149248-C-T DYZ19 ***
22324456-A-G 20162570-A-G DYZ19 ***
22346944-G-T 20185058-G-T DYZ19 ***
22346947-A-T 20185061-A-T DYZ19 ***
22348822-G-T 20186936-G-T DYZ19 ***
22358127-A-T 20196241-A-T DYZ19 ***
22358299-T-A 20196413-T-A DYZ19 ***
22358306-T-A 20196420-T-A DYZ19 ***
22358759-G-T 20196873-G-T DYZ19 ***
22359925-A-C 20198039-A-C DYZ19 ***
22361299-G-T 20199413-G-T DYZ19 ***
22366118-G-T 20204232-G-T DYZ19 ***
22434432-T-G 20272546-T-G DYZ19 ***
22452166-T-A 20290280-T-A DYZ19 ***
22481801-G-T 20319915-G-T DYZ19 ***
22498752-G-T 20336866-G-T DYZ19 ***
22955004-G-T 20793118-G-T ***
23017757-A-C 20855871-A-C ***
23519096-T-C 21357210-T-C ***
23519097-T-C 21357211-T-C ***
23519101-A-T 21357215-A-T ***
23519108-A-G 21357222-A-G ***
23519129-A-C 21357243-A-C ***
23519130-G-A 21357244-G-A ***
23569690-C-T 21407804-C-T ***
23723041-G-A 21561155-G-A ***
24175319-A-T 22029172-A-T P3_b1 ***
24182579-T-G 22036432-T-G P3_b1 ***
24208523-A-G 22062376-A-G P3_b1 ***
24232072-C-A 22085925-C-A P3_b1 ***
24283236-A-G 22137089-A-G P3_t1 ***
24283245-G-A 22137098-G-A P3_t1 ***
24326322-G-A 22180175-G-A P3_t1 ***
24547762-G-A 22401615-G-A P3_t2 ***
24550853-G-T 22404706-G-T P3_t2 ***
24562596-A-T 22416449-A-T P3_t2 ***
24588443-G-T 22442296-G-T P3_t2 ***
24595420-G-T 22449273-G-T P3_t2 ***
24599692-C-A 22453545-C-A P3_t2 ***
24619648-C-A 22473501-C-A P3_t2 ***
24635633-G-C 22489486-G-C P3_t2 ***
24652530-A-T 22506383-A-T P3_b2 ***
24661250-A-T 22515103-A-T P3_b2 ***
24661305-A-G 22515158-A-G P3_b2 ***
24662080-G-T 22515933-G-T P3_b2 ***
24695878-G-T 22549731-G-T P3_b2 ***
24727216-A-T 22581069-A-T P3_b2 ***
24750639-A-T 22604492-A-T P3_b2 ***
24759872-C-A 22613725-C-A P3_b2 ***
24759956-A-T 22613809-A-T P3_b2 ***
24766306-A-C 22620159-A-C P3_b2 ***
24862094-T-A 22715947-T-A IR1_R ***
24862151-T-G 22716004-T-G IR1_R ***
24862185-T-G 22716038-T-G IR1_R ***
24862237-T-G 22716090-T-G IR1_R ***
24905602-C-A 22759455-C-A g1 ***
24905835-A-G 22759688-A-G g1 ***
24905837-T-C 22759690-T-C g1 ***
24951625-C-T 22805478-C-T g1 ***
24992277-G-T 22846130-G-T g1 ***
25023571-A-T 22877424-A-T g1 ***
25158308-A-G 23012161-A-G g1 ***
25173059-T-A 23026912-T-A g1 ***
25182148-C-T 23036001-C-T g1 ***
25256652-G-T 23110505-G-T P2_r1 ***
25287818-T-C 23141671-T-C P2_r1 ***
25308112-T-A 23161965-T-A P2_r1 ***
25311592-C-G 23165445-C-G P2_r1 ***
25357064-A-G 23210917-A-G P2_r2 ***
25360877-T-A 23214730-T-A P2_r2 ***
25444461-G-T 23298314-G-T P2_r2 ***
25465870-T-A 23319723-T-A P2_r2 ***
25508909-C-A 23362762-C-A P1_gr1 ***
25520291-C-T 23374144-C-T P1_gr1 ***
25520416-A-G 23374269-A-G P1_gr1 ***
25531565-T-A 23385418-T-A P1_gr1 ***
25638704-A-T 23492557-A-T P1_b3 ***
25723870-T-A 23577723-T-A P1_b3 ***
25728715-C-T 23582568-C-T P1_b3 ***
25732078-A-C 23585931-A-C P1_b3 ***
25732195-C-A 23586048-C-A P1_b3 ***
25881007-G-A 23734860-G-A P1_Y1 ***
25996161-T-A 23850014-T-A P1_Y1 ***
26004394-A-G 23858247-A-G P1_Y1 ***
26041214-C-A 23895067-C-A P1_Y1 ***
26043410-C-A 23897263-C-A P1_Y1 ***
26079676-C-A 23933529-C-A P1_Y1 ***
26079798-A-T 23933651-A-T P1_Y1 ***
26139681-C-G 23993534-C-G P1_Y1 ***
26229231-G-T 24083084-G-T P1_Y1 ***
26385478-G-T 24239331-G-T P1_Y1 ***
26392241-C-T 24246094-C-T P1_Y1 ***
26463359-C-A 24317212-C-A P1_Y1 ***
26463716-G-T 24317569-G-T P1_Y1 ***
26507372-G-A 24361225-G-A P1_Y1 ***
26525996-G-A 24379849-G-A P1_Y1 ***
26526016-C-A 24379869-C-A P1_Y1 ***
26532508-A-C 24386361-A-C P1_g2 ***
26534747-A-C 24388600-A-C P1_g2 ***
26538040-G-T 24391893-G-T P1_g2 ***
26544076-C-A 24397929-C-A P1_g2 ***
26544125-A-G 24397978-A-G P1_g2 ***
26564201-G-T 24418054-G-T P1_g2 ***
26657448-C-A 24511301-C-A P1_g2 ***
26675808-A-T 24529661-A-T P1_g2 ***
26699985-G-C 24553838-G-C P1_g2 ***
26699988-T-G 24553841-T-G P1_g2 ***
26699997-A-G 24553850-A-G P1_g2 ***
26703131-T-G 24556984-T-G P1_g2 ***
26776632-A-C 24630485-A-C P1_g2 ***
26828103-T-C 24681956-T-C P1_g2 ***
26828302-C-A 24682155-C-A P1_g2 ***
26828331-C-T 24682184-C-T P1_g2 ***
26828353-T-C 24682206-T-C P1_g2 ***
26948651-C-T 24802504-C-T P1_r3 ***
26992893-C-T 24846746-C-T P1_r4 ***
27035480-C-T 24889333-C-T P1_r4 16×T***
27041320-T-G 24895173-T-G P1_r4 ***
27060177-T-A 24914030-T-A P1_r4 ***
27095966-C-T 24949819-C-T P1_r4 ***
27150801-G-T 25004654-G-T P1_g3 ***
27150816-G-T 25004669-G-T P1_g3 ***
27161489-C-A 25015342-C-A P1_g3 ***
27240814-G-A 25094667-G-A P1_g3 ***
27248234-T-C 25102087-T-C P1_g3 ***
27407821-T-C 25261674-T-C P1_g3 ***
27409232-C-A 25263085-C-A P1_g3 ***
27424439-C-A 25278292-C-A P1_g3 ***
27445948-G-A 25299801-G-A P1_Y2 ***
27528888-T-A 25382741-T-A P1_Y2 ***
27528909-T-A 25382762-T-A P1_Y2 ***
27558412-C-A 25412265-C-A P1_Y2 ***
27571566-A-C 25425419-A-C P1_Y2 ***
27648580-G-T 25502433-G-T P1_Y2 ***
27668051-T-G 25521904-T-G P1_Y2 ***
27680772-C-T 25534625-C-T P1_Y2 ***
27692550-A-G 25546403-A-G P1_Y2 ***
27719299-G-T 25573152-G-T P1_Y2 ***
27783729-A-C 25637582-A-C P1_Y2 ***
27823090-A-C 25676943-A-C P1_Y2 ***
27839929-A-C 25693782-A-C P1_Y2 ***
27868556-A-G 25722409-A-G P1_Y2 ***
27902254-C-T 25756107-C-T P1_Y2 ***
27919143-C-A 25772996-C-A P1_Y2 ***
28009230-A-C 25863083-A-C P1_Y2 ***
28091217-C-A 25945070-C-A P1_Y2 ***
28118348-G-T 25972201-G-T P1_b4 ***
28118361-C-A 25972214-C-A P1_b4 ***
28156507-G-T 26010360-G-T P1_b4 ***
28183627-A-C 26037480-A-C P1_b4 ***
28213860-C-T 26067713-C-T P1_b4 ***
28238059-T-A 26091912-T-A P1_b4 ***
28253588-T-C 26107441-T-C P1_b4 ***
28253609-G-T 26107462-G-T P1_b4 ***
28281402-G-A 26135255-G-A P1_b4 ***
28356083-C-A 26209936-C-A P1_gr2 ***
28415933-T-A 26269786-T-A P1_gr2 ***
28578906-G-A 26432759-G-A ***
58822423-G-A 56768448-C-T ***
58823287-C-A 56767584-G-T ***
58831034-A-T 56759837-T-A ***
58835342-A-T 56755529-T-A ***
58845478-C-A 56745393-G-T ***
58845608-C-T 56745263-G-A ***
58846028-T-G 56744843-A-C ***
58854947-C-G 56735924-G-C ***
58856246-A-T 56734625-T-A ***
58862649-C-A 56728222-G-T ***
58874773-C-T 56716098-G-A ***
58882937-C-G 56707934-G-C ***
58882946-C-T 56707925-G-A 4×CCATT***
58887966-T-A 56702905-A-T ***
58890286-A-C 56700585-T-G ***
58890388-T-C 56700483-A-G ***
58903417-C-T 56687454-G-A ***
58903418-A-C 56687453-T-G ***
58903455-C-A 56687416-G-T ***
58907516-C-T 56683355-G-A ***
58908751-A-T 56682120-T-A ***
58908794-C-G 56682077-G-C ***
58908803-T-A 56682068-A-T ***
58986201-C-A 56840054-C-A ***
23293596-GTGTA-G 21131710-GTGTA-G ***
28357150-CT-C 26211003-CT-C P1_gr2 15×T***
19469845-T-TTC 17357965-T-TTC 14×TC***
2845819-CTCAAAA-C 2977778-CTCAAAA-C ***
4636104-AAAATAT-A 4768063-AAAATAT-A ***
6091743-TTTTTTG-T 6223702-TTTTTTG-T ***
8125021-A-AAAGG 8256980-A-AAAGG ***
8631383-CTTTTTTT-C 8763342-CTTTTTTT-C 26×T***
9429040-TTGCA-CTGCG 9591431-TTGCA-CTGCG ***
13201890-CTAAGT-ATATGC 11046214-CTAAGT-ATATGC ***
13454810-T-TCCATA 11299134-T-TCCATA ***
13454813-A-ATTCCT 11299137-A-ATTCCT ***
13454818-A-ATTCCC 11299142-A-ATTCCC ***
13454823-A-ATTCCC 11299147-A-ATTCCC ***
13455956-CTCAAGTTGATTCAAGTCCATTCTATTCCATTCCATTCCATTACATTTCATTACATTCGTGTTGAT-C 11300280-CTCAAGTTGATTCAAGTCCATTCTATTCCATTCCATTCCATTACATTTCATTACATTCGTGTTGAT-C ***
13461095-GGGTG-AGGTT 11305419-GGGTG-AGGTT ***
13470444-TCTGCGT-CCTGTGG 11314768-TCTGCGT-CCTGTGG ***
13470462-AGCC-TGCA 11314786-AGCC-TGCA ***
13470534-GGG-TGC 11314858-GGG-TGC ***
13489029-TGC-CAT 11333353-TGC-CAT ***
13489043-GGATG-AGATT 11333367-GGATG-AGATT ***
13489066-TCCA-ACCC 11333390-TCCA-ACCC ***
13489074-GCT-ACC 11333398-GCT-ACC ***
13936208-G-GAAAA 11815502-G-GAAAA ***
14418162-A-ATTTG ***
16046662-ACACG-A 13934782-ACACG-A ***
16344414-T-TTCTTCC 14232534-T-TTCTTCC ***
17662050-GTG-T 15550170-GTG-T ***
17662050-GTGTT-G 15550170-GTGTT-G ***
19412008-G-GAAAT 17300128-G-GAAAT ***
20804883-GTG-A 18642997-GTG-A P4_Gap ***
21192061-G-GT 19030175-G-GT ***
21226433-G-GAAAA 19064547-G-GAAAA ***
21226437-G-GAAAA 19064551-G-GAAAA ***
21386196-TATA-T 19224310-TATA-T ***
21830186-ACAGT-A 19668300-ACAGT-A ***
21940037-C-CATATAT 19778151-C-CATATAT 22×AT***
22297122-ATCTG-TTGTT 20135236-ATCTG-TTGTT DYZ19 ***
22344512-ACAA-GCAG 20182626-ACAA-GCAG DYZ19 ***
22347238-ATCAA-TTCAG 20185352-ATCAA-TTCAG DYZ19 ***
22360090-ACC-CCT 20198204-ACC-CCT DYZ19 ***
22360108-AC-CT 20198222-AC-CT DYZ19 ***
22364656-GTGTT-CTGTC 20202770-GTGTT-CTGTC DYZ19 ***
22488226-CA-TG 20326340-CA-TG DYZ19 ***
22503610-GTGTTTCT-TTGTGTCC 20341724-GTGTTTCT-TTGTGTCC DYZ19 ***
23519096-TTAGAA-CCAGAT 21357210-TTAGAA-CCAGAT ***
23519129-AG-CA 21357243-AG-CA ***
24595386-CTG-TTT 22449239-CTG-TTT P3_t2 ***
25064913-GA-TC 22918766-GA-TC g1 ***
26828281-CTCTG-TTC 24682134-CTCTG-TTC P1_g2 ***
26828316-ACC-TCT 24682169-ACC-TCT P1_g2 ***
26828328-T-TCC 24682181-T-TCC P1_g2 ***
27810273-A-AAAGGAAGGAAGG 25664126-A-AAAGGAAGGAAGG P1_Y2 16×AAGG***
28209421-C-CT 26063274-C-CT P1_b4 23×T***
28805151-GTGGAATGGAATGGAATGGAAAGGAATGGAATAGAATGGAGTGAAGTGCAGTGCAGTGAAATGGAGTGGAAAGGAATGGAATGGAATGGAATGGAATGGAA-G 26659004-GTGGAATGGAATGGAATGGAAAGGAATGGAATAGAATGGAGTGAAGTGCAGTGCAGTGAAATGGAGTGGAAAGGAATGGAATGGAATGGAATGGAATGGAA-G 4×TGGAA***
58823277-CATTCCATCTC-A 56767584-GAGATGGAATG-T ***
58882513-CAGTC-TAGTA 56708354-GACTG-TACTA ***
58903417-CA-TC 56687453-TG-GA ***
58907479-GCAG-CCAT 56683389-CTGC-ATGG ***
21555238-CTTT-C,CTT 19393352-CTTT-C,CTT 15×T***
3922183-G-GAA 4054142-G-GAA 16×A***
4729752-G-A 4861711-G-A ***
5426381-TC-C,T 5558340-TC-C,T ***
6585203-A-G 6717162-A-G ***
7003017-C-T 7134976-C-T ***
13342864-A-G 11187188-A-G ***
13708983-T-C 11553307-T-C ***
16709450-CAG-C 14597570-CAG-C ***
22536681-A-G 20374795-A-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual22227654-A-G20065768-A-G173A 35C 75G 31T. The Gs and Ts all look misaligned.
Manual24999991-C-T22853844-C-T2A 47C 2G 41T. The 2A and 2G reads are misaligned.