Duncan
FGC-BigY: 7KEJH, FTDNA: 377578Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FGC-BigY 7KEJH |
---|---|---|---|---|---|---|---|---|
23526775-T-C | 21364889-T-C | FGC36684 | Y | Y | + | |||
14581400-A-G | 12469600-A-G | FGC36685 | Y | Y | + | |||
5710227-CAT-C | 5842186-CAT-C | * | ||||||
18067401-TAGAAAGAAAGAA-T | 15955521-TAGAAAGAAAGAA-T | 15×AGAA | ** | |||||
13861486-G-T | 11740780-G-T | ** | ||||||
10073718-T-A | 10236109-T-A | ** | ||||||
9077232-G-T | 9239623-G-T | ** | ||||||
2763696-C-A | 2895655-C-A | ** | ||||||
3322330-G-T | 3454289-G-T | ** | ||||||
3841550-A-T | 3973509-A-T | ** | ||||||
4448957-C-A | 4580916-C-A | ** | ||||||
4889298-C-A | 5021257-C-A | ** | ||||||
5313431-C-A | 5445390-C-A | ** | ||||||
7035280-T-G | 7167239-T-G | ** | ||||||
7091394-C-A | 7223353-C-A | ** | ||||||
7114642-G-T | 7246601-G-T | ** | ||||||
7243145-C-A | 7375104-C-A | ** | ||||||
7724559-C-A | 7856518-C-A | ** | ||||||
8166613-G-A | 8298572-G-A | ** | ||||||
8279815-G-T | 8411774-G-T | ** | ||||||
8911986-G-T | 9043945-G-T | ** | ||||||
10043721-T-A | 10206112-T-A | ** | ||||||
10073738-C-A | 10236129-C-A | ** | ||||||
13457612-C-A | 11301936-C-A | ** | ||||||
14027600-G-A | 11906894-G-A | ** | ||||||
14198495-C-A | 12077789-C-A | ** | ||||||
14592236-A-C | 12480436-A-C | ** | ||||||
14693700-G-T | 12581766-G-T | ** | ||||||
15763262-G-T | 13651382-G-T | ** | ||||||
15858442-G-A | 13746562-G-A | FGC47266 | ** | |||||
15894084-C-A | 13782204-C-A | ** | ||||||
15975080-C-A | 13863200-C-A | ** | ||||||
16352261-G-T | 14240381-G-T | ** | ||||||
17504216-A-G | 15392336-A-G | ** | ||||||
17753739-C-A | 15641859-C-A | ** | ||||||
18223788-T-C | 16111908-T-C | ** | ||||||
18539053-T-C | 16427173-T-C | ** | ||||||
19241500-C-A | 17129620-C-A | FTA32406 | ** | |||||
19423771-G-T | 17311891-G-T | ** | ||||||
19460705-C-A | 17348825-C-A | ** | ||||||
19475169-G-C | 17363289-G-C | ** | ||||||
21115595-A-C | 18953709-A-C | ** | ||||||
21147896-C-A | 18986010-C-A | ** | ||||||
21737799-C-A | 19575913-C-A | ** | ||||||
22782021-C-A | 20620135-C-A | ** | ||||||
23142404-C-A | 20980518-C-A | ** | ||||||
23190045-C-A | 21028159-C-A | ** | ||||||
23198873-G-T | 21036987-G-T | ** | ||||||
23419125-C-A | 21257239-C-A | ** | ||||||
23789385-C-A | 21627499-C-A | ** | ||||||
24406554-G-T | 22260407-G-T | ** | ||||||
28724127-C-A | 26577980-C-A | ** | ||||||
58973313-G-T | 56827166-G-T | ** | ||||||
58994973-G-T | 56848826-G-T | ** | ||||||
14179473-A-ATGTC | 12058767-A-ATGTC | ** | ||||||
28499309-TG-T | 26353162-TG-T | ** | ||||||
10023634-C-A | 10186025-C-A | *** | ||||||
22481429-G-C | 20319543-G-C | DYZ19 | *** | |||||
13473724-T-A | 11318048-T-A | *** | ||||||
58912787-G-C | 56678084-C-G | *** | ||||||
22503639-G-C | 20341753-G-C | DYZ19 | *** | |||||
13745911-T-G | 11590235-T-G | *** | ||||||
58876794-C-G | 56714077-G-C | *** | ||||||
24696109-C-CA | 22549962-C-CA | P3_b2 | 15×A | *** | ||||
24859198-G-GA | 22713051-G-GA | IR1_R | 12×A | *** | ||||
27990535-G-T | 25844388-G-T | P1_Y2 | *** | |||||
27778164-CT-C | 25632017-CT-C | P1_Y2 | 12×T | *** | ||||
22502903-G-C | 20341017-G-C | DYZ19 | *** | |||||
13196474-A-C | 11040798-A-C | *** | ||||||
19683841-CA-C | 17571961-CA-C | P5_Prx | 14×A | *** | ||||
27809437-C-A | 25663290-C-A | P1_Y2 | *** | |||||
19612191-AAT-A | 17500311-AAT-A | P5_Prx | 9×AT | *** | ||||
24672342-C-G | 22526195-C-G | P3_b2 | *** | |||||
10041393-G-C | 10203784-G-C | *** | ||||||
10041413-G-T | 10203804-G-T | FGC36476 | *** | |||||
10041399-C-T | 10203790-C-T | *** | ||||||
19763364-GA-G | 17651484-GA-G | P5_Prx | 15×A | *** | ||||
26001413-CT-C | 23855266-CT-C | P1_Y1 | 18×T | *** | ||||
27819786-A-AT | 25673639-A-AT | P1_Y2 | 13×T | *** | ||||
10023656-CTC-T | 10186047-CTC-T | *** | ||||||
22470656-C-G | 20308770-C-G | BY204676 | DYZ19 | *** | ||||
22505029-A-G | 20343143-A-G | DYZ19 | *** | |||||
13701152-T-C | 11545476-T-C | *** | ||||||
13702766-T-C | 11547090-T-C | *** | ||||||
13461696-T-A | 11306020-T-A | *** | ||||||
13474008-CGTA-GGTG | 11318332-CGTA-GGTG | *** | ||||||
6854399-C-A | 6986358-C-A | *** | ||||||
19189494-C-T | 17077614-C-T | *** | ||||||
24794436-T-G | 22648289-T-G | P3_b2 | *** | |||||
25231954-T-G | 23085807-T-G | P2_r1 | *** | |||||
25831995-A-T | 23685848-A-T | P1_b3 | *** | |||||
26902230-T-A | 24756083-T-A | P1_r3 | *** | |||||
27016187-A-C | 24870040-A-C | P1_r4 | *** | |||||
28186037-A-G | 26039890-A-G | P1_b4 | *** | |||||
10023630-C-CT | 10186021-C-CT | *** | ||||||
13143673-GCAGG-ACAGT | 10633159-GCAGG-ACAGT | *** | ||||||
26991266-TAGT-AAGA | 24845119-TAGT-AAGA | P1_r4 | *** | |||||
28245714-A-AT | 26099567-A-AT | P1_b4 | 15×T | *** | ||||
58977796-TCCAC-CCCAT | 56831649-TCCAC-CCCAT | *** | ||||||
24895675-A-C | 22749528-A-C | g1 | *** | |||||
18855509-C-A | 16743629-C-A | *** | ||||||
10041346-A-T | 10203737-A-T | *** | ||||||
10041351-A-G | 10203742-A-G | *** | ||||||
10041357-T-C | 10203748-T-C | FTA9319 | *** | |||||
21170326-T-G | 19008440-T-G | *** | ||||||
13740309-T-G | 11584633-T-G | *** | ||||||
19727375-T-C | 17615495-T-C | P5_Prx | *** | |||||
24043833-T-G | 21897686-T-G | *** | ||||||
9930165-AGCGG-CGCGT | 10092556-AGCGG-CGCGT | *** | ||||||
13809826-CTT-ATG | 11689120-CTT-ATG | *** | ||||||
25177324-TAC-AAA | 23031177-TAC-AAA | g1 | *** | |||||
27398546-GAAG-AAAA | 25252399-GAAG-AAAA | P1_g3 | *** | |||||
27602856-A-G | 25456709-A-G | P1_Y2 | *** | |||||
10086440-C-T | 10248831-C-T | *** | ||||||
25372091-A-T | 23225944-A-T | P2_r2 | *** | |||||
14937865-T-TTTCTTTTCTA | 12825940-T-TTTCTTTTCTA | *** | ||||||
13859632-GT-TTTC | 11738926-GT-TTTC | *** | ||||||
28117258-GTTGATC-TTTTATT | 25971111-GTTGATC-TTTTATT | P1_b4 | *** | |||||
9930129-C-T | 10092520-C-T | *** | ||||||
10042184-G-A | 10204575-G-A | *** | ||||||
19187499-G-T | 17075619-G-T | *** | ||||||
19930476-C-T | 17818596-C-T | P5_Prx | 22×T | *** | ||||
21714738-G-A | 19552852-G-A | *** | ||||||
25177307-A-C | 23031160-A-C | g1 | *** | |||||
25883630-C-T | 23737483-C-T | P1_Y1 | 17×T | *** | ||||
25883669-C-T | 23737522-C-T | P1_Y1 | 11×T | *** | ||||
27001804-A-T | 24855657-A-T | P1_r4 | *** | |||||
27056942-A-G | 24910795-A-G | P1_r4 | *** | |||||
13866949-GA-TG | 11746243-GA-TG | *** | ||||||
26284858-CAAA-C | 24138711-CAAA-C | P1_Y1 | 19×A | *** | ||||
58977828-GACTCCACTCAACTCC-CATTCCCCTCCTCTCA | 56831681-GACTCCACTCAACTCC-CATTCCCCTCCTCTCA | *** | ||||||
58981677-ACA-CCT | 56835530-ACA-CCT | *** | ||||||
58981746-ACATA-CCATT | 56835599-ACATA-CCATT | *** | ||||||
9325160-T-G | 9487551-T-G | *** | ||||||
18011079-C-T | 15899199-C-T | P7_Dst | *** | |||||
10043014-GAGT-CAGC | 10205405-GAGT-CAGC | *** | ||||||
27129799-T-C | 24983652-T-C | P1_g3 | *** | |||||
18011039-A-G | 15899159-A-G | P7_Dst | *** | |||||
13323515-AAAATACCG-TAAACA | 11167839-AAAATACCG-TAAACA | *** | ||||||
3131457-A-ATCTCTTCTCT | 3263416-A-ATCTCTTCTCT | 14×TCTCT | *** | |||||
58912415-T-C | 56678456-A-G | *** | ||||||
10073695-T-A | 10236086-T-A | *** | ||||||
10073679-C-G | 10236070-C-G | *** | ||||||
58912778-C-T | 56678093-G-A | *** | ||||||
58984891-G-C | 56838744-G-C | *** | ||||||
10073681-A-T | 10236072-A-T | *** | ||||||
10073680-A-C | 10236071-A-C | *** | ||||||
58996539-G-C | 56850392-G-C | *** | ||||||
58997280-A-C | 56851133-A-C | *** | ||||||
9919482-A-C | 10081873-A-C | *** | ||||||
13644027-G-T | 11488351-G-T | *** | ||||||
2649658-C-A | 2781617-C-A | *** | ||||||
2792597-T-A | 2924556-T-A | *** | ||||||
2809633-C-A | 2941592-C-A | *** | ||||||
2854971-G-T | 2986930-G-T | *** | ||||||
3274193-C-A | 3406152-C-A | *** | ||||||
3535581-C-A | 3667540-C-A | *** | ||||||
4064008-C-A | 4195967-C-A | *** | ||||||
4240816-T-C | 4372775-T-C | *** | ||||||
4282569-G-A | 4414528-G-A | *** | ||||||
4365946-G-T | 4497905-G-T | *** | ||||||
5061616-A-G | 5193575-A-G | *** | ||||||
5077498-A-G | 5209457-A-G | *** | ||||||
5077519-C-A | 5209478-C-A | *** | ||||||
6138927-G-T | 6270886-G-T | IR3_Dst | *** | |||||
6340337-G-A | 6472296-G-A | IR3_Dst | *** | |||||
6545033-C-A | 6676992-C-A | *** | ||||||
6626730-C-A | 6758689-C-A | *** | ||||||
6734812-G-T | 6866771-G-T | *** | ||||||
6734839-C-A | 6866798-C-A | *** | ||||||
6784423-A-C | 6916382-A-C | *** | ||||||
7045634-G-T | 7177593-G-T | *** | ||||||
7050306-A-T | 7182265-A-T | *** | ||||||
7053977-C-A | 7185936-C-A | *** | ||||||
7107068-C-A | 7239027-C-A | *** | ||||||
7179890-C-A | 7311849-C-A | *** | ||||||
7186883-G-T | 7318842-G-T | *** | ||||||
7196386-C-A | 7328345-C-A | *** | ||||||
7225351-T-C | 7357310-T-C | *** | ||||||
7239084-C-A | 7371043-C-A | *** | ||||||
7311933-C-A | 7443892-C-A | *** | ||||||
7316596-T-G | 7448555-T-G | *** | ||||||
7316608-T-G | 7448567-T-G | *** | ||||||
7348654-A-G | 7480613-A-G | *** | ||||||
7363235-G-A | 7495194-G-A | *** | ||||||
7389925-C-A | 7521884-C-A | *** | ||||||
7401053-G-T | 7533012-G-T | *** | ||||||
7414221-T-A | 7546180-T-A | *** | ||||||
7417151-G-T | 7549110-G-T | *** | ||||||
7422529-C-A | 7554488-C-A | *** | ||||||
7436116-G-T | 7568075-G-T | *** | ||||||
7490247-C-T | 7622206-C-T | IR1_L | *** | |||||
7572763-C-A | 7704722-C-A | *** | ||||||
7580080-C-A | 7712039-C-A | *** | ||||||
7709967-G-T | 7841926-G-T | *** | ||||||
7721186-C-A | 7853145-C-A | *** | ||||||
7758854-C-A | 7890813-C-A | *** | ||||||
7873688-C-A | 8005647-C-A | *** | ||||||
7990970-G-T | 8122929-G-T | *** | ||||||
8076784-C-A | 8208743-C-A | *** | ||||||
8171912-C-A | 8303871-C-A | *** | ||||||
8238235-G-T | 8370194-G-T | *** | ||||||
8293882-C-A | 8425841-C-A | *** | ||||||
8344042-C-T | 8476001-C-T | *** | ||||||
8344057-A-T | 8476016-A-T | *** | ||||||
8344058-C-G | 8476017-C-G | *** | ||||||
8344062-T-A | 8476021-T-A | *** | ||||||
8344065-C-G | 8476024-C-G | *** | ||||||
8723615-C-A | 8855574-C-A | *** | ||||||
8748427-A-C | 8880386-A-C | *** | ||||||
8790181-G-T | 8922140-G-T | *** | ||||||
8855926-C-A | 8987885-C-A | *** | ||||||
8856891-C-A | 8988850-C-A | *** | ||||||
8911925-G-T | 9043884-G-T | *** | ||||||
8913736-G-C | 9045695-G-C | *** | ||||||
8914739-C-A | 9046698-C-A | *** | ||||||
8976642-C-A | 9139033-C-A | BY18018 | *** | |||||
9140217-C-A | 9302608-C-A | *** | ||||||
9300729-A-C | 9463120-A-C | *** | ||||||
9301352-G-A | 9463743-G-A | *** | ||||||
9302629-T-C | 9465020-T-C | *** | ||||||
9304120-C-A | 9466511-C-A | *** | ||||||
9329869-C-A | 9492260-C-A | *** | ||||||
9330693-T-G | 9493084-T-G | *** | ||||||
9494119-G-T | 9656510-G-T | *** | ||||||
9517028-G-T | 9679419-G-T | *** | ||||||
9529169-C-A | 9691560-C-A | IR3_Prx | *** | |||||
9529183-T-G | 9691574-T-G | IR3_Prx | *** | |||||
9529194-C-T | 9691585-C-T | IR3_Prx | *** | |||||
9529203-A-G | 9691594-A-G | IR3_Prx | *** | |||||
9540297-T-G | 9702688-T-G | IR3_Prx | *** | |||||
9601615-C-A | 9764006-C-A | IR3_Prx | *** | |||||
9626054-T-G | 9788445-T-G | IR3_Prx | *** | |||||
9890502-C-A | 10052893-C-A | *** | ||||||
9909109-C-A | 10071500-C-A | *** | ||||||
9909121-A-G | 10071512-A-G | *** | ||||||
9909127-T-C | 10071518-T-C | *** | ||||||
9909145-G-A | 10071536-G-A | *** | ||||||
9915592-G-T | 10077983-G-T | *** | ||||||
9921839-C-T | 10084230-C-T | *** | ||||||
9921846-C-G | 10084237-C-G | *** | ||||||
9921915-A-G | 10084306-A-G | *** | ||||||
9921949-C-A | 10084340-C-A | *** | ||||||
9923925-T-C | 10086316-T-C | *** | ||||||
9923940-C-A | 10086331-C-A | *** | ||||||
9928189-C-A | 10090580-C-A | *** | ||||||
9951075-A-G | 10113466-A-G | *** | ||||||
9951859-A-G | 10114250-A-G | *** | ||||||
9951860-T-A | 10114251-T-A | *** | ||||||
9951897-C-T | 10114288-C-T | *** | ||||||
10011674-A-T | 10174065-A-T | *** | ||||||
10026095-C-A | 10188486-C-A | *** | ||||||
10041352-G-A | 10203743-G-A | *** | ||||||
10041479-C-A | 10203870-C-A | *** | ||||||
10043017-T-C | 10205408-T-C | *** | ||||||
10043139-T-C | 10205530-T-C | *** | ||||||
10043184-A-T | 10205575-A-T | *** | ||||||
10086302-T-A | 10248693-T-A | *** | ||||||
10086310-T-G | 10248701-T-G | *** | ||||||
10086410-G-C | 10248801-G-C | *** | ||||||
10096774-G-A | 10259165-G-A | *** | ||||||
13130800-A-T | 10620286-A-T | *** | ||||||
13140722-C-A | 10630208-C-A | *** | ||||||
13196478-C-T | 11040802-C-T | *** | ||||||
13212482-A-C | 11056806-A-C | *** | ||||||
13223751-G-T | 11068075-G-T | *** | ||||||
13250066-C-T | 11094390-C-T | *** | ||||||
13291018-C-A | 11135342-C-A | *** | ||||||
13360853-T-G | 11205177-T-G | *** | ||||||
13372183-G-A | 11216507-G-A | *** | ||||||
13433215-G-T | 11277539-G-T | *** | ||||||
13433736-G-C | 11278060-G-C | *** | ||||||
13460953-G-T | 11305277-G-T | *** | ||||||
13468042-C-A | 11312366-C-A | *** | ||||||
13468052-C-G | 11312376-C-G | *** | ||||||
13468110-C-A | 11312434-C-A | *** | ||||||
13484483-G-A | 11328807-G-A | *** | ||||||
13486557-G-C | 11330881-G-C | *** | ||||||
13488861-G-A | 11333185-G-A | *** | ||||||
13488869-C-G | 11333193-C-G | *** | ||||||
13488904-G-A | 11333228-G-A | *** | ||||||
13491072-C-A | 11335396-C-A | *** | ||||||
13505017-C-A | 11349341-C-A | *** | ||||||
13565532-A-G | 11409856-A-G | *** | ||||||
13571053-G-T | 11415377-G-T | *** | ||||||
13588793-T-C | 11433117-T-C | *** | ||||||
13634393-T-C | 11478717-T-C | *** | ||||||
13703415-G-T | 11547739-G-T | *** | ||||||
13729937-T-A | 11574261-T-A | *** | ||||||
13733875-T-C | 11578199-T-C | *** | ||||||
13739733-G-A | 11584057-G-A | *** | ||||||
13799492-A-T | 11678786-A-T | *** | ||||||
13856300-A-T | 11735594-A-T | *** | ||||||
13858258-G-T | 11737552-G-T | *** | ||||||
13858277-T-A | 11737571-T-A | *** | ||||||
13917434-C-A | 11796728-C-A | *** | ||||||
13974254-G-T | 11853548-G-T | *** | ||||||
14051708-C-A | 11931002-C-A | *** | ||||||
14053556-C-A | 11932850-C-A | *** | ||||||
14100947-G-T | 11980241-G-T | *** | ||||||
14136167-A-T | 12015461-A-T | *** | ||||||
14136302-C-A | 12015596-C-A | *** | ||||||
14152952-C-A | 12032246-C-A | *** | ||||||
14193075-C-A | 12072369-C-A | *** | ||||||
14213207-G-A | 12092501-G-A | *** | ||||||
14216328-C-A | 12095622-C-A | *** | ||||||
14227612-G-A | 12106906-G-A | *** | ||||||
14286880-C-A | 12166174-C-A | *** | ||||||
14316333-G-T | 12195627-G-T | *** | ||||||
14339454-G-A | 12218749-G-A | *** | ||||||
14350082-G-A | 12229377-G-A | *** | ||||||
14357762-C-A | 12237057-C-A | Z19072 | *** | |||||
14377131-C-A | 12256427-C-A | *** | ||||||
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27095809-G-T | 24949662-G-T | P1_r4 | *** | |||||
27129816-G-T | 24983669-G-T | P1_g3 | *** | |||||
27129829-A-C | 24983682-A-C | P1_g3 | *** | |||||
27130722-C-A | 24984575-C-A | P1_g3 | *** | |||||
27139573-G-T | 24993426-G-T | P1_g3 | *** | |||||
27186530-T-A | 25040383-T-A | P1_g3 | *** | |||||
27214394-A-G | 25068247-A-G | P1_g3 | *** | |||||
27239620-C-T | 25093473-C-T | P1_g3 | *** | |||||
27253349-G-T | 25107202-G-T | P1_g3 | *** | |||||
27256411-C-A | 25110264-C-A | P1_g3 | *** | |||||
27305506-T-A | 25159359-T-A | P1_g3 | *** | |||||
27314296-C-A | 25168149-C-A | P1_g3 | *** | |||||
27328595-A-G | 25182448-A-G | P1_g3 | *** | |||||
27356614-G-C | 25210467-G-C | P1_g3 | *** | |||||
27371052-G-T | 25224905-G-T | P1_g3 | *** | |||||
27497108-C-T | 25350961-C-T | P1_Y2 | *** | |||||
27534344-G-A | 25388197-G-A | P1_Y2 | *** | |||||
27543446-T-C | 25397299-T-C | P1_Y2 | *** | |||||
27711728-A-C | 25565581-A-C | P1_Y2 | *** | |||||
27732895-G-T | 25586748-G-T | P1_Y2 | *** | |||||
27778225-T-A | 25632078-T-A | P1_Y2 | *** | |||||
27780486-G-C | 25634339-G-C | P1_Y2 | *** | |||||
27782293-A-G | 25636146-A-G | P1_Y2 | *** | |||||
27800882-A-G | 25654735-A-G | P1_Y2 | *** | |||||
27837887-C-A | 25691740-C-A | P1_Y2 | *** | |||||
27844638-A-C | 25698491-A-C | P1_Y2 | *** | |||||
27859481-T-A | 25713334-T-A | P1_Y2 | *** | |||||
27859585-C-A | 25713438-C-A | P1_Y2 | *** | |||||
27872586-G-C | 25726439-G-C | P1_Y2 | *** | |||||
27903204-C-A | 25757057-C-A | P1_Y2 | *** | |||||
27917426-T-C | 25771279-T-C | P1_Y2 | *** | |||||
27953678-G-T | 25807531-G-T | P1_Y2 | *** | |||||
27967521-C-A | 25821374-C-A | P1_Y2 | *** | |||||
27982341-A-G | 25836194-A-G | P1_Y2 | *** | |||||
28062296-G-T | 25916149-G-T | P1_Y2 | *** | |||||
28094383-G-T | 25948236-G-T | P1_Y2 | *** | |||||
28117221-G-T | 25971074-G-T | P1_b4 | *** | |||||
28160892-C-T | 26014745-C-T | P1_b4 | *** | |||||
28160931-C-T | 26014784-C-T | P1_b4 | *** | |||||
28182579-C-A | 26036432-C-A | P1_b4 | *** | |||||
28214046-T-A | 26067899-T-A | P1_b4 | *** | |||||
28332322-G-T | 26186175-G-T | P1_b4 | *** | |||||
28438181-T-A | 26292034-T-A | P1_gr2 | *** | |||||
28566878-C-A | 26420731-C-A | *** | ||||||
28772871-C-A | 26626724-C-A | *** | ||||||
58821095-C-A | 56769776-G-T | *** | ||||||
58827414-A-T | 56763457-T-A | *** | ||||||
58828109-C-T | 56762762-G-A | *** | ||||||
58828127-A-C | 56762744-T-G | *** | ||||||
58828128-G-T | 56762743-C-A | *** | ||||||
58828171-T-C | 56762700-A-G | *** | ||||||
58844587-A-T | 56746284-T-A | *** | ||||||
58844594-T-C | 56746277-A-G | *** | ||||||
58846095-A-G | 56744776-T-C | *** | ||||||
58858766-C-G | 56732105-G-C | *** | ||||||
58858776-C-G | 56732095-G-C | *** | ||||||
58873305-C-T | 56717566-G-A | *** | ||||||
58876787-T-C | 56714084-A-G | *** | ||||||
58883950-G-T | 56706921-C-A | *** | ||||||
58912757-C-T | 56678114-G-A | *** | ||||||
58912771-T-C | 56678100-A-G | *** | ||||||
58979038-C-A | 56832891-C-A | *** | ||||||
58991302-C-T | 56845155-C-T | *** | ||||||
58991347-CCT-ACC | 56845200-CCT-ACC | *** | ||||||
13854287-AAA-CAT | 11733581-AAA-CAT | *** | ||||||
58976379-ACATTACAT-CCACTCCAA | 56830232-ACATTACAT-CCACTCCAA | *** | ||||||
13854270-AA-CT | 11733564-AA-CT | *** | ||||||
10073679-CAA-GCT | 10236070-CAA-GCT | *** | ||||||
13446325-GCT-ACA | 11290649-GCT-ACA | *** | ||||||
26046002-CT-C | 23899855-CT-C | P1_Y1 | 13×T | *** | ||||
8094546-GTA-G | 8226505-GTA-G | *** | ||||||
7414231-TCGCG-ACGCA | 7546190-TCGCG-ACGCA | *** | ||||||
7456748-TGT-GGG | 7588707-TGT-GGG | IR1_L | *** | |||||
8094570-GTA-G | 8226529-GTA-G | *** | ||||||
8125049-A-AAAG | 8257008-A-AAAG | *** | ||||||
8344057-ACTCATTGCTAGCTTG-TGTCAATGGTAGTTTA | 8476016-ACTCATTGCTAGCTTG-TGTCAATGGTAGTTTA | *** | ||||||
9360724-GTT-TTG | 9523115-GTT-TTG | *** | ||||||
9556031-A-AT | 9718422-A-AT | IR3_Prx | *** | |||||
9915591-AG-CT | 10077982-AG-CT | *** | ||||||
9915625-TGGAG-GGGAT | 10078016-TGGAG-GGGAT | *** | ||||||
9921827-TTTCTG-ATTCAC | 10084218-TTTCTG-ATTCAC | *** | ||||||
9921879-CA-TG | 10084270-CA-TG | *** | ||||||
9930174-AGAT-GGAA | 10092565-AGAT-GGAA | *** | ||||||
10012814-TC-CT | 10175205-TC-CT | *** | ||||||
10041351-AG-GA | 10203742-AG-GA | *** | ||||||
10042140-TGATTA-CAATTG | 10204531-TGATTA-CAATTG | *** | ||||||
10067111-AATACAGT-GAGG | 10229502-AATACAGT-GAGG | *** | ||||||
10086421-GTA-TTG | 10248812-GTA-TTG | *** | ||||||
13445839-CCTGCT-TCTGTC | 11290163-CCTGCT-TCTGTC | *** | ||||||
13460449-C-CCTT | 11304773-C-CCTT | *** | ||||||
13460451-GCA-G | 11304775-GCA-G | *** | ||||||
13460477-ATC-TTT | 11304801-ATC-TTT | *** | ||||||
13468057-CTTG-GTTA | 11312381-CTTG-GTTA | *** | ||||||
13475503-C-CT | 11319827-C-CT | *** | ||||||
13476188-ATAAAT-TTACAC | 11320512-ATAAAT-TTACAC | *** | ||||||
13488815-CGGAC-GGGAT | 11333139-CGGAC-GGGAT | *** | ||||||
13566931-GTG-A | 11411255-GTG-A | *** | ||||||
13601982-A-AAC | 11446306-A-AAC | 14×AC | *** | |||||
13661287-A-AATGTC | 11505611-A-AATGTC | *** | ||||||
13729278-GG-TT | 11573602-GG-TT | *** | ||||||
13739702-GGAATGGAATGGAATGGAA-TTAG | 11584026-GGAATGGAATGGAATGGAA-TTAG | *** | ||||||
13739764-AATGGC-A | 11584088-AATGGC-A | *** | ||||||
13739823-GG-TT | 11584147-GG-TT | *** | ||||||
13804057-AAAGGTGTC-TATGGTCTT | 11683351-AAAGGTGTC-TATGGTCTT | *** | ||||||
13854252-GGAC-TGAA | 11733546-GGAC-TGAA | *** | ||||||
13857641-AAAT-GAAA | 11736935-AAAT-GAAA | *** | ||||||
13857660-TT-GG | 11736954-TT-GG | *** | ||||||
13857791-GAATG-TAATC | 11737085-GAATG-TAATC | *** | ||||||
13858269-AGAA-GGAC | 11737563-AGAA-GGAC | *** | ||||||
13859789-GGAT-AGAC | 11739083-GGAT-AGAC | *** | ||||||
13866125-AAATT-GAATC | 11745419-AAATT-GAATC | *** | ||||||
13983550-G-GGAAGGAAT | 11862844-G-GGAAGGAAT | *** | ||||||
14376265-A-AGACAG | 12255561-A-AGACAG | *** | ||||||
14746176-CAAAAAAA-C | 12634245-CAAAAAAA-C | 19×A | *** | |||||
14819056-TTTG-T | 12707123-TTTG-T | *** | ||||||
14937873-C-CTTTTATTTTA | 12825948-C-CTTTTATTTTA | *** | ||||||
15491941-G-GTATA | 13380061-G-GTATA | 19×TA | *** | |||||
16145151-ATCAGCATTTTTTAAAAGCTTCCCTGGTACAGTCAAGTTTAAG-A | 14033271-ATCAGCATTTTTTAAAAGCTTCCCTGGTACAGTCAAGTTTAAG-A | P8_Dst | *** | |||||
16176843-C-CA | 14064963-C-CA | *** | ||||||
17083002-CTTTCTTTCT-C | 14971122-CTTTCTTTCT-C | *** | ||||||
17189355-GAAAAAA-G | 15077475-GAAAAAA-G | 19×A | *** | |||||
18014662-CCAT-C | 15902782-CCAT-C | P7_Dst | 5×CAT | *** | ||||
18296168-CT-C | 16184288-CT-C | P6_Prx | 10×T | *** | ||||
19926979-GTATTTC-TTTTTTT | 17815099-GTATTTC-TTTTTTT | P5_Prx | *** | |||||
20089638-A-AGACAG | 17977758-A-AGACAG | P5_Dst | *** | |||||
20141755-A-AATTG | 18029875-A-AATTG | P5_Dst | *** | |||||
20210243-C-CCAT | 18048357-C-CCAT | P5_Dst | *** | |||||
20214462-CCAA-C | 18052576-CCAA-C | P5_Dst | *** | |||||
20426755-CTC-TTCT | 18264869-CTC-TTCT | P5_Dst | *** | |||||
20439586-A-AGACAG | 18277700-A-AGACAG | P5_Dst | *** | |||||
20716996-TGT-AGA | 18555110-TGT-AGA | P4_Prx | *** | |||||
20897484-A-ACAG | 18735598-A-ACAG | P4_Dst | *** | |||||
20908997-A-AAGGAC | 18747111-A-AAGGAC | P4_Dst | *** | |||||
20933509-CA-C | 18771623-CA-C | P4_Dst | *** | |||||
22481294-GAC-TAT | 20319408-GAC-TAT | DYZ19 | *** | |||||
22505056-AGTGT-TGTGA | 20343170-AGTGT-TGTGA | DYZ19 | *** | |||||
22737231-CAAAAAAA-C | 20575345-CAAAAAAA-C | 18×A | *** | |||||
24034446-GC-G | 21888299-GC-G | *** | ||||||
24049158-C-CA | 21903011-C-CA | 9×A | *** | |||||
24553438-TA-T | 22407291-TA-T | P3_t2 | *** | |||||
24585505-AAAATGTGGCTAACACACTGC-A | 22439358-AAAATGTGGCTAACACACTGC-A | P3_t2 | *** | |||||
24597883-AGCT-GGCC | 22451736-AGCT-GGCC | P3_t2 | *** | |||||
24700556-A-ACT | 22554409-A-ACT | P3_b2 | *** | |||||
24704847-T-TCTG | 22558700-T-TCTG | P3_b2 | *** | |||||
24710331-AAT-GAA | 22564184-AAT-GAA | P3_b2 | *** | |||||
24743615-TGGGGGGGCAAA-T | 22597468-TGGGGGGGCAAA-T | P3_b2 | *** | |||||
24752764-AT-A | 22606617-AT-A | P3_b2 | *** | |||||
24778541-G-GGCT | 22632394-G-GGCT | P3_b2 | *** | |||||
24787454-CA-C | 22641307-CA-C | P3_b2 | *** | |||||
24792680-G-GAGC | 22646533-G-GAGC | P3_b2 | *** | |||||
24983141-A-AGACAG | 22836994-A-AGACAG | g1 | *** | |||||
25394890-T-TTCTG | 23248743-T-TTCTG | P2_r2 | *** | |||||
25403538-GTA-G | 23257391-GTA-G | P2_r2 | *** | |||||
25429364-TGGGGAGCAAAAGGGGTTATG-T | 23283217-TGGGGAGCAAAAGGGGTTATG-T | P2_r2 | *** | |||||
25432726-A-AGCT | 23286579-A-AGCT | P2_r2 | *** | |||||
25435206-TATTTTAATCTA-T | 23289059-TATTTTAATCTA-T | P2_r2 | *** | |||||
25454174-A-ATCAAATTGT | 23308027-A-ATCAAATTGT | P2_r2 | *** | |||||
25454177-AGC-A | 23308030-AGC-A | P2_r2 | *** | |||||
25455549-A-AG | 23309402-A-AG | P2_r2 | *** | |||||
25460777-CT-C | 23314630-CT-C | P2_r2 | *** | |||||
25480302-GT-TG | 23334155-GT-TG | P2_r2 | *** | |||||
25845397-C-CA | 23699250-C-CA | P1_b3 | 8×A | *** | ||||
26873983-CTT-C | 24727836-CTT-C | P1_r3 | 23×T | *** | ||||
26992907-G-GT | 24846760-G-GT | P1_r4 | 24×T | *** | ||||
27082231-AGGAGGGA-GGGGGGGG | 24936084-AGGAGGGA-GGGGGGGG | P1_r4 | *** | |||||
27117014-AT-A | 24970867-AT-A | P1_r4 | 8×T | *** | ||||
27131696-CC-TT | 24985549-CC-TT | P1_g3 | *** | |||||
27147042-T-TTCCTG | 25000895-T-TTCCTG | P1_g3 | *** | |||||
27151460-AT-A | 25005313-AT-A | P1_g3 | 9×T | *** | ||||
27156678-TA-T | 25010531-TA-T | P1_g3 | *** | |||||
27206479-TCTAAAATAAATA-T | 25060332-TCTAAAATAAATA-T | P1_g3 | *** | |||||
27214371-GTTGTTT-G | 25068224-GTTGTTT-G | P1_g3 | *** | |||||
27231382-GCCCCAGCCT-G | 25085235-GCCCCAGCCT-G | P1_g3 | *** | |||||
27296059-TGGCCAAAACA-T | 25149912-TGGCCAAAACA-T | P1_g3 | *** | |||||
27302041-G-GCTGTC | 25155894-G-GCTGTC | P1_g3 | *** | |||||
27340563-T-TTCTG | 25194416-T-TTCTG | P1_g3 | *** | |||||
27368713-A-AGACAG | 25222566-A-AGACAG | P1_g3 | *** | |||||
27602842-TTTTG-T | 25456695-TTTTG-T | P1_Y2 | *** | |||||
27777421-CA-C | 25631274-CA-C | P1_Y2 | *** | |||||
27791098-A-AGACAG | 25644951-A-AGACAG | P1_Y2 | *** | |||||
28001199-T-GA | 25855052-T-GA | P1_Y2 | *** | |||||
28022181-CCAA-C | 25876034-CCAA-C | P1_Y2 | *** | |||||
28125461-TC-T | 25979314-TC-T | P1_b4 | *** | |||||
28226499-CT-C | 26080352-CT-C | P1_b4 | *** | |||||
28258185-A-AGACAG | 26112038-A-AGACAG | P1_b4 | *** | |||||
28581596-TA-T | 26435449-TA-T | 8×A | *** | |||||
28799249-GGA-G | 26653102-GGA-G | *** | ||||||
58819738-CATTG-TATTC | 56771129-CAATG-GAATA | *** | ||||||
58819747-CCA-TCG | 56771122-TGG-CGA | *** | ||||||
58844600-C-CGGTTTGAAGG | 56746270-G-GCCTTCAAACC | *** | ||||||
58908887-TTCC-CTCCATTAT | 56681981-GGAA-ATAATGGAG | *** | ||||||
58972156-TCC-ACA | 56826009-TCC-ACA | *** | ||||||
58972730-TATTCCATTC-CATCCCGTTT | 56826583-TATTCCATTC-CATCCCGTTT | *** | ||||||
58974199-GCCAT-TCCAG | 56828052-GCCAT-TCCAG | *** | ||||||
58975998-CACG-TGTT | 56829851-CACG-TGTT | *** | ||||||
58976588-GG-CT | 56830441-GG-CT | *** | ||||||
58976687-TGC-CAT | 56830540-TGC-CAT | *** | ||||||
58977283-GATCTC-TAGCAA | 56831136-GATCTC-TAGCAA | *** | ||||||
58978016-TTTCCATTG-ATTCCATTC | 56831869-TTTCCATTG-ATTCCATTC | *** | ||||||
58978729-CTTCAAA-TTTTGAC | 56832582-CTTCAAA-TTTTGAC | *** | ||||||
58996993-TC-CA | 56850846-TC-CA | *** | ||||||
5313437-ACCT-A | 5445396-ACCT-A | 5×CCT | *** | |||||
21464232-G-GAAAT | 19302346-G-GAAAT | *** | ||||||
58978024-G-GCATTCCATTC | 56831877-G-GCATTCCATTC | 4×CATTC | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.