Villanueva

FTDNA: 329814
MDKA Birth: Mexico

Tree Position

R-M269 > PF7562 > Z29758

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFTDNA
329814
hg19:Y:13720376-G-A hg38:Y:11564700-G-A JFS0116BY1016 DYZ17 +
hg19:Y:9382054-T-C hg38:Y:9544445-T-C DC145 Y+
hg19:Y:2739170-G-A hg38:Y:2871129-G-A BY56166 YY+
hg19:Y:6698438-T-G hg38:Y:6830397-T-G BY60781 YY+
hg19:Y:7305124-C-T hg38:Y:7437083-C-T BY53640 YY+
hg19:Y:7541881-T-A hg38:Y:7673840-T-A BY65767 YY+
hg19:Y:9805363-A-G hg38:Y:9967754-A-G BY81097 YY+
hg19:Y:13464092-G-A hg38:Y:11308416-G-A BY85674 +
hg19:Y:13655790-T-C hg38:Y:11500114-T-C BY87224 DYZ17 +
hg19:Y:13824022-GA-G hg38:Y:11703316-GA-G DYZ17 +
hg19:Y:14019040-G-A hg38:Y:11898334-G-A BY92336 YY+
hg19:Y:14145655-A-T hg38:Y:12024949-A-T BY93344 YY+
hg19:Y:14186561-T-C hg38:Y:12065855-T-C BY93652 YY+
hg19:Y:14847618-A-G hg38:Y:12735684-A-G BY97969 YY+
hg19:Y:15517087-T-C hg38:Y:13405207-T-C BY102155 YY+
hg19:Y:15611539-C-T hg38:Y:13499659-C-T BY102879 YY+
hg19:Y:15866484-G-T hg38:Y:13754604-G-T BY104635 YY+
hg19:Y:16393029-T-A hg38:Y:14281149-T-A BY107477 YY+
hg19:Y:16393032-G-A hg38:Y:14281152-G-A BY107478 YY+
hg19:Y:16536463-A-G hg38:Y:14424583-A-G BY108461 YY+
hg19:Y:16749888-C-T hg38:Y:14638008-C-T Y52283 YY+
hg19:Y:16950936-T-C hg38:Y:14839056-T-C BY111345 YY+
hg19:Y:17071593-A-G hg38:Y:14959713-A-G BY112103 YY+
hg19:Y:17529577-G-A hg38:Y:15417697-G-A BY115493 YY+
hg19:Y:17681262-T-C hg38:Y:15569382-T-C BY116633 YY+
hg19:Y:18953792-G-A hg38:Y:16841912-G-A BY125061 YY+
hg19:Y:19053527-A-AT hg38:Y:16941647-A-AT +
hg19:Y:19406611-C-A hg38:Y:17294731-C-A BY128834 YY+
hg19:Y:21332619-A-G hg38:Y:19170733-A-G BY132175 YY+
hg19:Y:21801653-A-C hg38:Y:19639767-A-C BY135542 YY+
hg19:Y:22045078-C-A hg38:Y:19883192-C-A BY137311 YY+
hg19:Y:22420083-A-C hg38:Y:20258197-A-C BY217789 DYZ19 +
hg19:Y:22583130-A-G hg38:Y:20421244-A-G BY139281 YY+
hg19:Y:22652073-C-T hg38:Y:20490187-C-T BY139762 YY+
hg19:Y:23628595-C-G hg38:Y:21466709-C-G BY146846 YY+
hg19:Y:24001757-C-G hg38:Y:21855610-C-G BY149188 Y+
hg19:Y:24005206-T-C hg38:Y:21859059-T-C BY149230 Y+
hg19:Y:28772674-A-T hg38:Y:26626527-A-T BY151138 +
hg19:Y:10049073-C-T hg38:Y:10211464-C-T **
hg19:Y:22366946-G-C hg38:Y:20205060-G-C FGC54680 DYZ19 **
hg19:Y:22502171-G-T hg38:Y:20340285-G-T FGC77849 DYZ19 **
hg19:Y:9936830-A-C hg38:Y:10099221-A-C A15632 **
hg19:Y:13425536-G-T hg38:Y:11269860-G-T PF531 **
hg19:Y:9214253-G-C hg38:Y:9376644-G-C **
hg19:Y:28577801-T-C hg38:Y:26431654-T-C CTS12328 **
hg19:Y:28577805-C-G hg38:Y:26431658-C-G CTS12329 **
hg19:Y:6114215-T-C hg38:Y:6246174-T-C **
hg19:Y:10017851-C-T hg38:Y:10180242-C-T BY47003 **
hg19:Y:13870325-G-A hg38:Y:11749619-G-A BY91757 **
hg19:Y:20473268-T-C hg38:Y:18311382-T-C BY212182 P5_Dst **
hg19:Y:22484726-C-A hg38:Y:20322840-C-A DYZ19 **
hg19:Y:22491191-G-T hg38:Y:20329305-G-T DYZ19 **
hg19:Y:28581817-G-A hg38:Y:26435670-G-A FT120060 **
hg19:Y:6131157-A-AG hg38:Y:6263116-A-AG ***
hg19:Y:9955152-G-GTT hg38:Y:10117543-G-GTT ***
hg19:Y:10037133-G-A hg38:Y:10199524-G-A ***
hg19:Y:13701778-T-G hg38:Y:11546102-T-G DYZ17 ***
hg19:Y:13851014-A-G hg38:Y:11730308-A-G FT186105 DYZ17 ***
hg19:Y:13851036-CG-C hg38:Y:11730330-CG-C DYZ17 ***
hg19:Y:13851040-T-TA hg38:Y:11730334-T-TA DYZ17 ***
hg19:Y:13851071-G-C hg38:Y:11730365-G-C DYZ17 ***
hg19:Y:13851083-A-C hg38:Y:11730377-A-C DYZ17 ***
hg19:Y:13851097-A-G hg38:Y:11730391-A-G DYZ17 ***
hg19:Y:13860012-A-ATGCAG hg38:Y:11739306-A-ATGCAG DYZ17 ***
hg19:Y:13860018-T-A hg38:Y:11739312-T-A DYZ17 ***
hg19:Y:16130404-GA-G hg38:Y:14018524-GA-G P8_Prx 15×A***
hg19:Y:22258686-T-G hg38:Y:20096800-T-G DYZ19 ***
hg19:Y:22341472-G-T hg38:Y:20179586-G-T DYZ19 ***
hg19:Y:22460239-C-A hg38:Y:20298353-C-A DYZ19 ***
hg19:Y:22475132-A-G hg38:Y:20313246-A-G DYZ19 ***
hg19:Y:22503164-C-T hg38:Y:20341278-C-T DYZ19 ***
hg19:Y:22503213-T-A hg38:Y:20341327-T-A DYZ19 ***
hg19:Y:22504142-G-T hg38:Y:20342256-G-T DYZ19 ***
hg19:Y:22504149-T-A hg38:Y:20342263-T-A DYZ19 ***
hg19:Y:22511730-C-T hg38:Y:20349844-C-T BY225766 DYZ19 ***
hg19:Y:22511962-C-A hg38:Y:20350076-C-A DYZ19 ***
hg19:Y:58982903-C-T hg38:Y:56836756-C-T ***
hg19:Y:13433424-TA-T hg38:Y:11277748-TA-T 10×A***
hg19:Y:13716085-A-T hg38:Y:11560409-A-T DYZ17 ***
hg19:Y:13716116-T-G hg38:Y:11560440-T-G DYZ17 ***
hg19:Y:22502439-T-C hg38:Y:20340553-T-C DYZ19 ***
hg19:Y:23666509-AT-A hg38:Y:21504623-AT-A 13×T***
hg19:Y:22270392-T-A hg38:Y:20108506-T-A DYZ19 ***
hg19:Y:22441642-T-G hg38:Y:20279756-T-G BY219030 DYZ19 ***
hg19:Y:10020877-C-T hg38:Y:10183268-C-T ***
hg19:Y:13860344-T-G hg38:Y:11739638-T-G DYZ17 ***
hg19:Y:22503169-T-A,C hg38:Y:20341283-T-A,C DYZ19 ***
hg19:Y:13335716-G-C hg38:Y:11180040-G-C ***
hg19:Y:13335741-C-G hg38:Y:11180065-C-G ***
hg19:Y:13486019-A-T hg38:Y:11330343-A-T ***
hg19:Y:58822799-T-G hg38:Y:56768072-A-C ***
hg19:Y:10018970-C-T hg38:Y:10181361-C-T ***
hg19:Y:9952399-G-A hg38:Y:10114790-G-A ***
hg19:Y:13137780-T-A hg38:Y:10627266-T-A ***
hg19:Y:22460263-T-A hg38:Y:20298377-T-A BY45568 DYZ19 ***
hg19:Y:22460266-G-T hg38:Y:20298380-G-T BY39286 DYZ19 ***
hg19:Y:58976442-C-T hg38:Y:56830295-C-T ***
hg19:Y:7053358-A-AAAAGAAAGAAAG hg38:Y:7185317-A-AAAAGAAAGAAAG 17×AAAG***
hg19:Y:13141094-G-A hg38:Y:10630580-G-A ***
hg19:Y:22438367-G-T hg38:Y:20276481-G-T DYZ19 ***
hg19:Y:58982866-C-T hg38:Y:56836719-C-T ***
hg19:Y:22366823-A-G hg38:Y:20204937-A-G DYZ19 ***
hg19:Y:22366824-G-C hg38:Y:20204938-G-C DYZ19 ***
hg19:Y:13686907-GGACAC-G hg38:Y:11531231-GGACAC-G DYZ17 ***
hg19:Y:22258849-G-T hg38:Y:20096963-G-T DYZ19 ***
hg19:Y:22258883-A-G hg38:Y:20096997-A-G DYZ19 ***
hg19:Y:22341436-G-A hg38:Y:20179550-G-A DYZ19 ***
hg19:Y:23899699-GTGA-G hg38:Y:21737813-GTGA-G ***
hg19:Y:13476861-GC-G hg38:Y:11321185-GC-G ***
hg19:Y:24177697-TTG-T hg38:Y:22031550-TTG-T P3_b1 17×TG***
hg19:Y:13141245-A-T hg38:Y:10630731-A-T ***
hg19:Y:13694436-A-G hg38:Y:11538760-A-G DYZ17 ***
hg19:Y:13869143-T-A hg38:Y:11748437-T-A DYZ17 ***
hg19:Y:13869152-A-G hg38:Y:11748446-A-G DYZ17 ***
hg19:Y:13869643-C-T hg38:Y:11748937-C-T DYZ17 ***
hg19:Y:22502503-A-T hg38:Y:20340617-A-T DYZ19 ***
hg19:Y:22502504-G-A hg38:Y:20340618-G-A DYZ19 ***
hg19:Y:22503447-A-G hg38:Y:20341561-A-G FGC78591 DYZ19 ***
hg19:Y:26807330-TAC-T hg38:Y:24661183-TAC-T P1_g2 17×AC***
hg19:Y:58980906-G-C hg38:Y:56834759-G-C ***
hg19:Y:58980916-G-C hg38:Y:56834769-G-C ***
hg19:Y:22438337-A-G hg38:Y:20276451-A-G BY24455 DYZ19 ***
hg19:Y:6134485-T-G hg38:Y:6266444-T-G ***
hg19:Y:22276469-A-C hg38:Y:20114583-A-C DYZ19 ***
hg19:Y:9952422-C-A hg38:Y:10114813-C-A ***
hg19:Y:13435396-C-T hg38:Y:11279720-C-T FGC80720 ***
hg19:Y:10036724-C-T hg38:Y:10199115-C-T ***
hg19:Y:10036725-A-G hg38:Y:10199116-A-G ***
hg19:Y:10036731-G-A hg38:Y:10199122-G-A ***
hg19:Y:22488853-T-G hg38:Y:20326967-T-G FGC42207 DYZ19 ***
hg19:Y:13141205-A-C hg38:Y:10630691-A-C ***
hg19:Y:22258667-G-A hg38:Y:20096781-G-A DYZ19 ***
hg19:Y:22503466-G-C hg38:Y:20341580-G-C DYZ19 ***
hg19:Y:22257953-A-C hg38:Y:20096067-A-C DYZ19 ***
hg19:Y:13451536-G-C hg38:Y:11295860-G-C ***
hg19:Y:22282077-C-T hg38:Y:20120191-C-T DYZ19 ***
hg19:Y:10018943-C-A hg38:Y:10181334-C-A ***
hg19:Y:22357473-A-T hg38:Y:20195587-A-T A4170 DYZ19 ***
hg19:Y:9345056-T-G hg38:Y:9507447-T-G ***
hg19:Y:6174505-T-G hg38:Y:6306464-T-G IR3_Dst ***
hg19:Y:22242328-A-T hg38:Y:20080442-A-T BY22902 DYZ19 ***
hg19:Y:22287062-G-A hg38:Y:20125176-G-A DYZ19 ***
hg19:Y:22503022-C-T hg38:Y:20341136-C-T DYZ19 ***
hg19:Y:13469730-C-T hg38:Y:11314054-C-T ***
hg19:Y:10015802-C-T hg38:Y:10178193-C-T FT376269 ***
hg19:Y:22242380-A-G hg38:Y:20080494-A-G DYZ19 ***
hg19:Y:13856722-G-A,GAAATA hg38:Y:11736016-G-A,GAAATA DYZ17 ***
hg19:Y:22258654-T-C hg38:Y:20096768-T-C DYZ19 ***
hg19:Y:22506773-A-T hg38:Y:20344887-A-T FGC81570 DYZ19 ***
hg19:Y:22293165-C-T hg38:Y:20131279-C-T DYZ19 ***
hg19:Y:58978978-T-C hg38:Y:56832831-T-C ***
hg19:Y:9936752-C-A hg38:Y:10099143-C-A ***
hg19:Y:13859872-G-A hg38:Y:11739166-G-A DYZ17 ***
hg19:Y:58979741-A-ATTCTG hg38:Y:56833594-A-ATTCTG ***
hg19:Y:9954314-A-T hg38:Y:10116705-A-T ***
hg19:Y:22506502-T-A hg38:Y:20344616-T-A DYZ19 ***
hg19:Y:22242354-G-A hg38:Y:20080468-G-A DYZ19 ***
hg19:Y:22450035-T-A hg38:Y:20288149-T-A DYZ19 ***
hg19:Y:10020845-CTCTG-C hg38:Y:10183236-CTCTG-C ***
hg19:Y:13480823-G-C hg38:Y:11325147-G-C ***
hg19:Y:13480827-T-C hg38:Y:11325151-T-C A16241 ***
hg19:Y:20723141-G-GT hg38:Y:18561255-G-GT P4_Prx 12×T***
hg19:Y:13448772-TCCACTCTACTCCACA-T hg38:Y:11293096-TCCACTCTACTCCACA-T ***
hg19:Y:10015098-C-T hg38:Y:10177489-C-T ***
hg19:Y:13801176-CT-C hg38:Y:11680470-CT-C DYZ17 ***
hg19:Y:28805241-ATGGAATGGAATG-A hg38:Y:26659094-ATGGAATGGAATG-A ***
hg19:Y:22502652-A-G hg38:Y:20340766-A-G DYZ19 ***
hg19:Y:13480737-C-A hg38:Y:11325061-C-A ***
hg19:Y:13480745-T-C hg38:Y:11325069-T-C ***
hg19:Y:22287058-C-T hg38:Y:20125172-C-T DYZ19 ***
hg19:Y:22283237-G-T hg38:Y:20121351-G-T DYZ19 ***
hg19:Y:13480755-A-G hg38:Y:11325079-A-G ***
hg19:Y:22502628-A-C hg38:Y:20340742-A-C DYZ19 ***
hg19:Y:22504070-A-T hg38:Y:20342184-A-T DYZ19 ***
hg19:Y:22503011-G-T hg38:Y:20341125-G-T DYZ19 ***
hg19:Y:25829903-G-A hg38:Y:23683756-G-A P1_b3 ***
hg19:Y:22502146-C-A hg38:Y:20340260-C-A DYZ19 ***
hg19:Y:13331925-A-G hg38:Y:11176249-A-G FT443040 ***
hg19:Y:13722115-G-T hg38:Y:11566439-G-T DYZ17 ***
hg19:Y:16099622-G-A hg38:Y:13987742-G-A P8_Prx ***
hg19:Y:18323996-TTAGA-T hg38:Y:16212116-TTAGA-T P6_Prx ***
hg19:Y:19773855-G-A hg38:Y:17661975-G-A P5_Prx ***
hg19:Y:20043373-T-C hg38:Y:17931493-T-C P5_Prx ***
hg19:Y:22224505-A-G hg38:Y:20062619-A-G DYZ19 ***
hg19:Y:22247164-G-T hg38:Y:20085278-G-T DYZ19 ***
hg19:Y:22251026-C-A hg38:Y:20089140-C-A DYZ19 ***
hg19:Y:22274795-G-C hg38:Y:20112909-G-C FGC78965 DYZ19 ***
hg19:Y:22284407-G-T hg38:Y:20122521-G-T DYZ19 ***
hg19:Y:22293131-A-C hg38:Y:20131245-A-C DYZ19 ***
hg19:Y:22321454-G-T hg38:Y:20159568-G-T DYZ19 ***
hg19:Y:22426910-A-G hg38:Y:20265024-A-G DYZ19 ***
hg19:Y:22435531-G-T hg38:Y:20273645-G-T DYZ19 ***
hg19:Y:22435966-G-T hg38:Y:20274080-G-T DYZ19 ***
hg19:Y:22449923-T-G hg38:Y:20288037-T-G DYZ19 ***
hg19:Y:22502953-A-T hg38:Y:20341067-A-T DYZ19 ***
hg19:Y:22505725-C-T hg38:Y:20343839-C-T DYZ19 ***
hg19:Y:25098001-T-C hg38:Y:22951854-T-C g1 ***
hg19:Y:25117595-C-T hg38:Y:22971448-C-T g1 ***
hg19:Y:25274541-T-C hg38:Y:23128394-T-C P2_r1 ***
hg19:Y:26155136-C-A hg38:Y:24008989-C-A P1_Y1 ***
hg19:Y:18898613-G-GGA hg38:Y:16786733-G-GGA 10×GA***
hg19:Y:58977314-T-C,G hg38:Y:56831167-T-C,G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3298141089184579211488006538
Used in age calculations1089184579211488006538
Counts of SNPs3128
Variant counts last updated 2025-12-12 02:36:08.


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