Tree Position

R-P312/S116 > Z40481 > DF99/S11987 > FGC16982 > S23540 > 8101359-A-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
216789
BigY2
216789
Manual
Edits
19686879-C-A 17574999-C-A P5_Prx ***A*
19772274-G-A 17660394-G-A P5_Prx ***A*
22264088-G-A 20102202-G-A DYZ19 ***A*
28816639-G-A 26670492-G-A A*
6267327-A-T 6399286-A-T IR3_Dst ***A*
20743076-A-C 18581190-A-C P4_Prx ***A*
20649914-T-C 18488028-T-C P4_Prx ***A*
28816565-T-G 26670418-T-G A*
14329074-T-G 12208368-T-G Y49380 YY++
22190544-A-C 20028658-A-C S916 YY++
22018530-C-A 19856644-C-A Y57520 YY++
28769334-G-A 26623187-G-A Y60022 Y++
18044550-T-A 15932670-T-A Y54109 YY++
16711148-G-T 14599268-G-T Y52231 YY++
16040516-C-T 13928636-C-T Y51414 YY++
13690458-C-A 11534782-C-A BY43180 +
13841976-T-A 11721270-T-A Y48742 ++
22271697-A-T 20109811-A-T BY52282 DYZ19 ++
22443027-A-T 20281141-A-T DYZ19 +**
8737452-A-G 8869411-A-G Y47809 YY++
8580792-A-G 8712751-A-G Y47569 YY++
8328246-G-A 8460205-G-A Y47103 YY++
7815669-C-G 7947628-C-G Y46454 YY++
7740930-G-C 7872889-G-C Y46347 YY++
6997226-T-A 7129185-T-A BY37186 YY++
6173913-T-A 6305872-T-A BY59389 IR3_Dst **+
22762342-CT-C 20600456-CT-C ++
23773206-A-G 21611320-A-G Y59542 Y++
26168429-G-A 24022282-G-A P1_Y1 +
22269768-C-A 20107882-C-A DYZ19 ++
22279258-A-T 20117372-A-T DYZ19 ****
14174795-G-T 12054089-G-T **
14195965-C-A 12075259-C-A **
14204963-C-A 12084257-C-A **
14006689-A-G 11885983-A-G **
14225366-C-A 12104660-C-A **
13969484-C-A 11848778-C-A **
13964225-C-A 11843519-C-A **
13938127-A-G 11817421-A-G **
14255181-C-A 12134475-C-A **
13926548-A-G 11805842-A-G FGC72210 **
14344557-C-T 12223852-C-T **
14356303-G-T 12235598-G-T **
14356407-CTT-C 12235702-CTT-C 10×T**
13926371-C-T 11805665-C-T **
3969295-G-GT 4101254-G-GT 9×T**
13900519-C-A 11779813-C-A **
13881303-C-A 11760597-C-A **
13873887-C-A 11753181-C-A **
11675387-G-T **
11672547-C-A **
11643288-G-T **
13626025-C-T 11470349-C-T **
14448223-T-G 12327496-T-G **
13610607-G-C 11454931-G-C **
13521457-C-A 11365781-C-A **
13502508-C-A 11346832-C-A **
13471978-G-A 11316302-G-A **
13435783-G-T 11280107-G-T **
13306228-T-G 11150552-T-G **
13282160-C-A 11126484-C-A **
14445538-C-A 12324811-C-A **
14755797-G-A 12643866-G-A **
14450283-G-A 12329556-G-A **
14933723-A-G 12821788-A-G **
15699133-G-T 13587253-G-T **
15680089-C-T 13568209-C-T **
15576671-A-G 13464791-A-G **
15411337-A-G 13299457-A-G **
15364056-TC-T 13252176-TC-T **
15334772-C-A 13222890-C-A **
15302388-C-A 13190487-C-A **
15284311-C-A 13172410-C-A **
15238944-T-G 13127030-T-G **
15221040-T-G 13109126-T-G **
15184854-T-G 13072940-T-G **
15184433-A-G 13072519-A-G **
15177681-C-T 13065767-C-T **
15066003-C-A 12954095-C-A **
14757279-A-G 12645348-A-G **
14471764-C-A 12351033-C-A **
11037485-C-A **
14742508-ACATC-A 12630576-ACATC-A **
14741923-A-T 12629991-A-T **
14719531-A-C 12607599-A-C **
14719528-A-C 12607596-A-C **
14715458-G-T 12603525-G-T **
14694880-A-T 12582946-A-T **
14680613-A-G 12568679-A-G **
14676898-C-A 12564964-C-A **
14567828-C-T 12456028-C-T **
14537915-T-A 12426116-T-A **
14527557-C-A 12415758-C-A **
14493395-G-A 12381592-G-A **
14490570-C-T 12369839-C-T **
13228881-C-A 11073205-C-A **
10982524-T-C **
11027691-A-C **
10686960-C-A **
10811437-C-T **
10811251-A-T **
10808946-T-G **
10808608-T-TTCTATACCAC **
10793019-C-A **
10788063-A-C **
10787491-C-A **
10770570-G-A **
10752418-C-A **
10693959-C-A **
10693934-AATTCC-A **
10693352-A-C **
10688174-C-A **
10684511-C-A **
10830178-C-G **
10664971-CT-C **
10661152-C-A **
10659973-C-A **
10659961-T-C **
10659957-C-T **
10658313-C-A **
10624340-C-A **
10056886-C-A 10219277-C-A **
10041006-G-T 10203397-G-T **
10041002-T-A 10203393-T-A **
10037853-A-G 10200244-A-G FGC72207 **
10018112-C-A 10180503-C-A **
9934038-C-A 10096429-C-A **
9767929-G-T 9930320-G-T **
10818931-C-A **
10834007-CTCCAT-C **
11026838-C-A **
10975920-G-T **
11018586-T-C **
11011719-T-C **
11011702-C-A **
11011689-C-T **
11011664-C-G **
11011636-C-G **
11010850-C-A **
11005513-C-G **
10985065-A-C **
10983200-C-A **
10982542-A-T **
10982531-C-A **
10982528-C-T **
15730634-G-T 13618754-G-T **
10975156-T-C **
10840666-C-A **
10951436-T-G **
10951435-T-G **
10946835-A-C **
10943342-A-C **
10940146-C-A **
10900666-A-C **
10894437-A-G **
10888712-C-A **
10888481-C-A **
10886252-G-T **
10882711-C-A **
10882600-C-A **
10881276-T-C **
10847756-C-A **
15729083-C-A 13617203-C-A **
16675967-G-T 14564087-G-T **
15730637-G-T 13618757-G-T **
22205516-C-A 20043630-C-A **
23516980-A-G 21355094-A-G **
23464823-G-T 21302937-G-T **
23447469-C-G 21285583-C-G **
23372891-C-A 21211005-C-A **
23360753-C-A 21198867-C-A **
23291345-C-A 21129459-C-A **
23048513-C-A 20886627-C-A **
23036000-C-A 20874114-C-A **
22979455-T-G 20817569-T-G **
22880675-C-A 20718789-C-A **
22624338-C-A 20462452-C-A **
22594245-T-C 20432359-T-C **
22537172-C-A 20375286-C-A **
22205006-T-C 20043120-T-C **
23997634-C-A 21851487-C-A **
22204394-A-C 20042508-A-C **
22204390-A-C 20042504-A-C **
22204380-A-C 20042494-A-C **
22171804-A-T 20009918-A-T **
22151888-G-T 19990002-G-T **
22067660-G-A 19905774-G-A **
22058169-G-T 19896283-G-T **
21703102-C-A 19541216-C-A **
21680486-G-T 19518600-G-T **
21585871-C-A 19423985-C-A **
21427082-T-G 19265196-T-G **
21409867-C-A 19247981-C-A **
21387046-T-A 19225160-T-A **
21383264-A-G 19221378-A-G **
23997339-C-A 21851192-C-A **
24450495-C-A 22304348-C-A **
21297834-C-A 19135948-C-A **
28673785-C-A 26527638-C-A **
56871534-C-A **
56854341-T-A **
56851016-C-A **
56842218-C-A **
56835871-C-G **
56827532-CTTTCC-A **
56825652-G-T **
28793086-G-A 26646939-G-A **
28773707-T-C 26627560-T-C **
28721227-G-T 26575080-G-T **
28707624-A-G 26561477-A-G **
28707623-C-T 26561476-C-T **
28707612-G-C 26561465-G-C **
28707468-C-A 26561321-C-A **
28585507-A-G 26439360-A-G **
24509294-G-A 22363147-G-A **
28113193-A-C 25967046-A-C P1_Y2 **
28033121-A-C 25886974-A-C P1_Y2 **
28008038-A-AC 25861891-A-AC P1_Y2 **
27981736-C-A 25835589-C-A P1_Y2 **
26526602-A-G 24380455-A-G P1_Y1 **
26320827-AT-A 24174680-AT-A P1_Y1 **
26010364-A-C 23864217-A-C P1_Y1 **
26001450-T-G 23855303-T-G P1_Y1 **
25980625-A-C 23834478-A-C P1_Y1 **
25980623-A-C 23834476-A-C P1_Y1 **
25974237-G-T 23828090-G-T P1_Y1 **
25866477-C-A 23720330-C-A P1_Y1 **
25096493-G-T 22950346-G-T g1 **
24673099-G-T 22526952-G-T P3_b2 **
21334973-C-A 19173087-C-A **
21269389-G-T 19107503-G-T **
15743970-C-A 13632090-C-A **
16726361-T-C 14614481-T-C **
17617915-A-G 15506035-A-G **
17571899-C-A 15460019-C-A **
17521159-A-G 15409279-A-G **
17505507-C-A 15393627-C-A **
17486301-A-G 15374421-A-G **
17464805-A-G 15352925-A-G **
17433143-G-T 15321263-G-T **
17363086-C-A 15251206-C-A **
17362779-G-T 15250899-G-T **
17246508-A-C 15134628-A-C **
17228766-C-A 15116886-C-A **
17029081-C-A 14917201-C-A **
16987770-T-C 14875890-T-C **
16987393-A-G 14875513-A-G **
16726299-A-G 14614419-A-G **
17775397-CT-C 15663517-CT-C **
9605749-G-GA 9768140-G-GA IR3_Prx **
16516087-C-A 14404207-C-A **
16474938-C-A 14363058-C-A **
16384661-C-A 14272781-C-A **
16342318-A-G 14230438-A-G **
16316966-A-C 14205086-A-C **
16176957-C-A 14065077-C-A **
16064863-G-T 13952983-G-T **
16062720-C-A 13950840-C-A **
16048930-C-A 13937050-C-A **
16044758-C-A 13932878-C-A **
16003578-C-G 13891698-C-G **
15926803-G-T 13814923-G-T **
15808839-C-A 13696959-C-A **
17735422-C-A 15623542-C-A **
17788008-C-A 15676128-C-A **
21242301-C-A 19080415-C-A **
19056224-G-A 16944344-G-A **
21134922-C-A 18973036-C-A **
21119494-C-A 18957608-C-A **
20853212-T-G 18691326-T-G P4_Dst **
20424877-G-T 18262991-G-T P5_Dst **
20350311-CAAA-C 18188425-CAAA-C P5_Dst 12×A**
20280095-TTTTCC-T 18118209-TTTTCC-T P5_Dst **
19958264-T-G 17846384-T-G P5_Prx **
19958261-G-T 17846381-G-T P5_Prx **
19809869-T-C 17697989-T-C P5_Prx **
19719329-A-AC 17607449-A-AC P5_Prx **
19671065-G-T 17559185-G-T P5_Prx **
19622119-C-A 17510239-C-A P5_Prx **
19479892-C-A 17368012-C-A **
19459523-C-T 17347643-C-T **
18890488-G-A 16778608-G-A **
18035818-C-T 15923938-C-T **
18810725-C-A 16698845-C-A **
18659781-C-A 16547901-C-A **
18390067-AT-A 16278187-AT-A P6_Gap **
18329078-T-G 16217198-T-G P6_Prx **
18297649-C-A 16185769-C-A P6_Prx **
18188296-C-A 16076416-C-A **
18157575-C-G 16045695-C-G **
18154392-T-C 16042512-T-C **
18135460-C-A 16023580-C-A **
18089923-C-A 15978043-C-A **
18086877-C-A 15974997-C-A **
18042886-C-A 15931006-C-A **
18040625-C-A 15928745-C-A **
18036523-AG-A 15924643-AG-A **
9767082-C-A 9929473-C-A **
8901113-C-A 9033072-C-A **
9461875-G-T 9624266-G-T **
3079561-T-TAA 3211520-T-TAA 18×A**
4175115-C-A 4307074-C-A **
2685634-C-A 2817593-C-A **
4527187-C-A 4659146-C-A **
9927418-C-A 10089809-C-A **
10677919-G-T **
10912258-G-A **
16272220-C-A 14160340-C-A **
10672836-C-A **
14602636-C-A 12490838-C-A **
28660501-C-A 26514354-C-A **
23066683-G-T 20904797-G-T **
20865491-A-G 18703605-A-G FGC72225 P4_Dst **
22204388-A-C 20042502-A-C **
22055398-C-A 19893512-C-A **
10921755-C-A **
7239450-C-A 7371409-C-A **
16091155-C-A 13979275-C-A **
15012245-C-A 12900333-C-A **
7340992-G-T 7472951-G-T **
17181725-G-T 15069845-G-T **
15866226-A-T 13754346-A-T **
6231179-A-AC 6363138-A-AC IR3_Dst **
10823499-C-A **
6205555-G-T 6337514-G-T IR3_Dst **
56827584-G-T **
22624899-C-A 20463013-C-A **
14324929-A-G 12204223-A-G **
3591063-C-A 3723022-C-A **
3148589-C-A 3280548-C-A **
15398510-C-A 13286630-C-A **
13317277-C-A 11161601-C-A **
3218623-A-G 3350582-A-G **
3622303-G-T 3754262-G-T **
3560259-T-G 3692218-T-G **
3550284-G-A 3682243-G-A **
3549218-G-T 3681177-G-T **
3549153-G-T 3681112-G-T **
3506101-G-T 3638060-G-T **
3444120-C-A 3576079-C-A **
3409691-T-C 3541650-T-C **
3391075-T-C 3523034-T-C **
3387404-G-T 3519363-G-T **
9440346-A-G 9602737-A-G **
3269684-C-A 3401643-C-A **
3258932-C-A 3390891-C-A **
3197537-T-C 3329496-T-C **
27981737-C-A 25835590-C-A P1_Y2 **
3185890-G-T 3317849-G-T **
3183968-T-C 3315927-T-C **
3183856-C-A 3315815-C-A **
3123455-C-A 3255414-C-A **
3079537-G-T 3211496-G-T **
2984815-G-T 3116774-G-T **
2915280-G-T 3047239-G-T **
2907054-C-A 3039013-C-A **
2906875-TA-T 3038834-TA-T **
2785993-C-A 2917952-C-A **
2774956-C-A 2906915-C-A **
2729921-A-C 2861880-A-C **
2729918-G-A 2861877-G-A **
2708191-A-G 2840150-A-G **
11005509-A-T **
10884672-C-A **
3805175-T-G 3937134-T-G **
21221023-C-A 19059137-C-A **
27872568-A-C 25726421-A-C P1_Y2 **
17165306-C-A 15053426-C-A **
6402588-C-A 6534547-C-A **
10823441-C-A **
15185412-C-A 13073498-C-A **
10946839-C-A **
27829290-C-A 25683143-C-A P1_Y2 **
7123554-C-A 7255513-C-A **
10885197-C-CACTCT **
7197321-C-A 7329280-C-A **
10893925-CCACTT-C **
8673825-C-A 8805784-C-A **
4056690-T-TA 4188649-T-TA 10×A**
6828417-C-A 6960376-C-A **
22425537-C-A 20263651-C-A DYZ19 **
13617835-C-A 11462159-C-A **
28634978-C-A 26488831-C-A **
13974687-C-T 11853981-C-T **
19088150-A-G 16976270-A-G **
58993686-A-C 56847539-A-C **
5400895-A-T 5532854-A-T **
22491239-A-C 20329353-A-C DYZ19 **
22428430-A-G 20266544-A-G Z4113 DYZ19 **
22358904-A-C 20197018-A-C DYZ19 **
14926355-T-A 12814420-T-A **
22808769-C-A 20646883-C-A **
22734442-C-A 20572556-C-A Z25356 **
8379152-T-C 8511111-T-C **
10930155-G-T **
13890913-C-A 11770207-C-A **
14230119-C-A 12109413-C-A **
17222710-C-A 15110830-C-A **
2772886-C-A 2904845-C-A **
20840463-C-A 18678577-C-A P4_Gap **
14297222-C-A 12176516-C-A **
20842441-A-G 18680555-A-G P4_Dst **
6882438-C-A 7014397-C-A **
7275083-C-A 7407042-C-A **
4372030-C-A 4503989-C-A **
22662057-C-A 20500171-C-A **
7824853-C-A 7956812-C-A **
15334405-C-A 13222523-C-A **
14933611-C-A 12821676-C-A **
10659953-A-C **
10912267-C-T **
10661667-C-A **
14458330-A-G 12337603-A-G **
21709069-C-A 19547183-C-A **
13855446-C-A 11734740-C-A **
15140903-CTT-C 13028990-CTT-C 11×T**
27546764-G-T 25400617-G-T P1_Y2 **
4561669-C-A 4693628-C-A **
5603714-C-A 5735673-C-A **
21427077-T-G 19265191-T-G **
3830883-C-A 3962842-C-A **
8556312-A-T 8688271-A-T **
28592928-C-CA 26446781-C-CA 11×A**
26167726-A-ATG 24021579-A-ATG P1_Y1 **
3252985-C-A 3384944-C-A **
4968975-C-A 5100934-C-A **
17481226-C-A 15369346-C-A **
3663870-C-T 3795829-C-T FGC49266 **
3291776-C-T 3423735-C-T **
3811233-G-T 3943192-G-T **
6521924-CT-C 6653883-CT-C 9×T**
6926246-A-T 7058205-A-T **
6911399-G-T 7043358-G-T **
6822424-C-A 6954383-C-A **
6771569-T-C 6903528-T-C **
6767793-A-T 6899752-A-T **
6688558-C-T 6820517-C-T **
6648640-TA-T 6780599-TA-T **
6626753-T-C 6758712-T-C **
6626750-G-A 6758709-G-A **
6626740-CA-C 6758699-CA-C **
6597686-C-A 6729645-C-A **
6592176-G-A 6724135-G-A **
6580698-G-T 6712657-G-T **
6434517-C-A 6566476-C-A **
7042633-T-G 7174592-T-G **
6414353-C-A 6546312-C-A **
6411720-G-T 6543679-G-T **
3817363-A-G 3949322-A-G **
6231175-A-C 6363134-A-C IR3_Dst **
5996901-C-T 6128860-C-T **
5887115-G-T 6019074-G-T **
5856904-G-T 5988863-G-T **
5822239-G-T 5954198-G-T **
5815316-G-T 5947275-G-T **
5814407-A-C 5946366-A-C **
5786289-C-A 5918248-C-A **
5773604-C-A 5905563-C-A **
5733394-C-T 5865353-C-T **
7000754-C-A 7132713-C-A **
7044243-G-T 7176202-G-T **
5661219-G-T 5793178-G-T **
7758981-A-G 7890940-A-G **
9015383-C-A 9177774-C-A **
9057295-A-G **
5502827-C-CTG 5634786-C-CTG 17×TG**
8748646-A-G 8880605-A-G Y47827 **
8660550-CAAAAAA-C 8792509-CAAAAAA-C 18×A**
8279200-G-T 8411159-G-T **
8177798-T-G 8309757-T-G **
8073078-C-A 8205037-C-A **
7991276-G-A 8123235-G-A **
7985975-C-A 8117934-C-A **
7917085-A-G 8049044-A-G **
7896639-A-G 8028598-A-G **
7896637-A-T 8028596-A-T **
7573314-T-G 7705273-T-G **
7061388-G-C 7193347-G-C **
7503845-C-A 7635804-C-A IR1_L **
7422741-G-T 7554700-G-T **
7385528-C-A 7517487-C-A **
7294549-G-T 7426508-G-T **
7275141-T-G 7407100-T-G **
7248176-G-A 7380135-G-A **
7208356-C-T 7340315-C-T **
7182239-C-A 7314198-C-A **
7175948-C-A 7307907-C-A **
7142618-G-A 7274577-G-A **
7128225-C-A 7260184-C-A **
7094350-G-T 7226309-G-T **
7093494-C-A 7225453-C-A **
5724589-A-C 5856548-A-C **
6353059-G-T 6485018-G-T **
5622661-G-T 5754620-G-T **
4278373-C-A 4410332-C-A **
4815644-G-T 4947603-G-T **
4807957-A-G 4939916-A-G **
4789034-C-A 4920993-C-A **
4768197-A-G 4900156-A-G **
5594663-G-T 5726622-G-T **
4689309-G-A 4821268-G-A **
4649888-G-T 4781847-G-T **
4563425-G-T 4695384-G-T **
4527437-C-A 4659396-C-A **
4448029-C-A 4579988-C-A **
4380764-G-T 4512723-G-T **
4366409-C-A 4498368-C-A **
4311048-A-G 4443007-A-G **
4268205-G-T 4400164-G-T **
4861316-C-A 4993275-C-A **
4268058-A-G 4400017-A-G **
4265534-C-T 4397493-C-T **
4265525-G-T 4397484-G-T **
4197719-C-A 4329678-C-A **
4175113-G-A 4307072-G-A **
4175075-C-A 4307034-C-A **
4174961-TC-T 4306920-TC-T **
4173892-T-C 4305851-T-C **
4130516-T-C 4262475-T-C **
4081692-T-A 4213651-T-A **
4010671-T-A 4142630-T-A **
3977850-A-G 4109809-A-G **
3969265-A-C 4101224-A-C **
3921953-G-T 4053912-G-T **
4860208-G-T 4992167-G-T **
4703761-T-A 4835720-T-A **
4861364-C-A 4993323-C-A **
5084816-G-A 5216775-G-A **
5553073-C-A 5685032-C-A **
5434497-G-T 5566456-G-T **
5400857-C-A 5532816-C-A **
5294635-G-T 5426594-G-T **
5274094-G-T 5406053-G-T **
5273616-G-T 5405575-G-T **
5205439-G-T 5337398-G-T **
4889421-C-A 5021380-C-A **
5200853-G-T 5332812-G-T **
5195643-A-T 5327602-A-T **
5180091-G-T 5312050-G-T **
56876234-G-A **
5065362-C-T 5197321-C-T **
4979206-C-G 5111165-C-G **
4979184-T-A 5111143-T-A **
4950757-G-A 5082716-G-A **
18965939-C-A 16854059-C-A ***
22346240-G-A 20184354-G-A DYZ19 ***
16930650-T-C 14818770-T-C ***
27096084-C-T 24949937-C-T P1_r4 ***
14025870-G-A 11905164-G-A ***
22441582-T-A 20279696-T-A DYZ19 ***
22429870-C-A 20267984-C-A DYZ19 ***
22340024-A-C 20178138-A-C DYZ19 ***
8849921-G-T 8981880-G-T ***
22286678-A-C 20124792-A-C DYZ19 ***
22310716-T-C 20148830-T-C DYZ19 ***
28480898-G-T 26334751-G-T ***
22261794-A-T 20099908-A-T DYZ19 ***
22653286-C-A 20491400-C-A ***
9373037-C-T 9535428-C-T ***
9361372-C-A 9523763-C-A ***
18190601-G-T 16078721-G-T ***
18261780-A-G 16149900-A-G ***
9082076-T-G 9244467-T-G ***
10647826-C-A ***
14065819-C-A 11945113-C-A ***
10875874-T-A ***
10987897-TC-T ***
10793127-C-A ***
7239661-C-A 7371620-C-A ***
13857226-G-A 11736520-G-A ***
22996012-CAAAA-C,CAA 20834126-CAAAA-C,CAA 18×A***
24013847-CTATATATATATATA-C,CTATATATATATA 21867700-CTATATATATATATA-C,CTATATATATATA 21×TA***
10827577-T-C ***
13485908-T-C 11330232-T-C ***
56823168-G-T ***
13480422-T-G 11324746-T-G ***
10869002-C-A ***
20574861-G-T 18412975-G-T P5_Dst ***
10689787-T-C ***
10893570-C-A ***
14180802-G-A 12060096-G-A ***
10662142-C-A ***
6040088-T-C 6172047-T-C ***
10841996-CTCCAT-C ***
19035821-T-G 16923941-T-G ***
7613823-C-A 7745782-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual4585565-A-G4717524-A-G8G
Manual14539162-G-A12427363-G-A4A

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2167891095888479924518083019
Kit: 2167891013140982002678046435
Used in age calculations1095888482002678083019
Counts of SNPs1214
Variant counts last updated 2018-05-28 19:53:09.



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