Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > P295[P] > M242[Q] > L472 > L56 > L53 > L54 > M930 > M3 > M884 > M925 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
NA19735
6829173-C-T 6961132-C-T FT294684 Y+
17470857-C-T 15358977-C-T CTS7417 YY+
2657247-G-A 2789206-G-A CTS5 YY+
2889231-C-G 3021190-C-G CTS317 V1156 YY+
3061282-C-G 3193241-C-G FT315909 +
3138080-A-C 3270039-A-C FT316212 +
3193102-T-A 3325061-T-A FT316380 +
3663160-T-C 3795119-T-C FT183563 +
4229024-G-A 4360983-G-A +
4286815-C-T 4418774-C-T FT183885 +
4795140-C-T 4927099-C-T FT321742 +
5312840-C-A 5444799-C-A FT323510 +
5983855-A-G 6115814-A-G FT325712 +
6040739-T-C 6172698-T-C +
6098048-G-A 6230007-G-A +
6367903-C-G 6499862-C-G FT326337 +
6729302-T-A 6861261-T-A CTS405 Y+
6737670-A-G 6869629-A-G FT294654 YY+
7185521-C-T 7317480-C-T YY+
7703250-G-A 7835209-G-A Y11655 YY+
7737003-T-C 7868962-T-C FT295004 YY+
8023785-A-C 8155744-A-C V1572 YY+
8160569-A-C 8292528-A-C V1677 YY+
8212180-C-A 8344139-C-A Y11656 YY+
8442287-G-C 8574246-G-C V1988 YY+
8510198-T-A 8642157-T-A FT295396 YY+
8667874-T-A 8799833-T-A YY+
8673454-G-A 8805413-G-A FT295482 Y+
8837752-A-T 8969711-A-T YY+
9493521-T-C 9655912-T-C +
9805261-A-G 9967652-A-G FT295750 YY+
9832505-A-G 9994896-A-G YY+
9832513-A-G 9994904-A-G YY+
10042850-G-C 10205241-G-C +
10066617-A-C 10229008-A-C +
10083495-C-A 10245886-C-A +
10094444-C-T 10256835-C-T +
13316219-C-T 11160543-C-T +
13460673-G-C 11304997-G-C +
13491440-G-A 11335764-G-A BY47635 +
13671892-C-A 11516216-C-A +
13679186-A-G 11523510-A-G BY15723 +
13831414-C-T 11710708-C-T BY54511 +
13860410-G-A 11739704-G-A +
13905209-A-T 11784503-A-T FT295837 Y+
14264468-G-A 12143762-G-A YY+
14282049-G-T 12161343-G-T Y10782 YY+
14304093-T-A 12183387-T-A FT296085 Y+
14368521-C-T 12247817-C-T CTS2572 YY+
14483655-A-T 12362924-A-T FT329268 YY+
14485582-C-A 12364851-C-A CTS2789 YY+
14503091-G-A 12391296-G-A BY57991F19012 YY+
14722212-C-A 12610280-C-A BY97273 YY+
15276522-G-A 13164611-G-A CTS3931 YY+
15311307-T-G 13199412-T-G Y11652 YY+
15493124-G-A 13381244-G-A FT296503 YY+
15506836-C-T 13394956-C-T CTS4240 V2993 YY+
16050319-G-A 13938439-G-A CTS5172 YY+
16656126-C-T 14544246-C-T Y10783 YY+
16685543-T-G 14573663-T-G Y+
16814720-T-C 14702840-T-C Y+
16862940-C-T 14751060-C-T FT297032 YY+
17015428-C-T 14903548-C-T Y11657 YY+
17325723-A-T 15213843-A-T Y11658 YY+
17353767-A-T 15241887-A-T FT297237 YY+
17561762-T-C 15449882-T-C FT297324 Y+
17622880-G-A 15511000-G-A Y11653 YY+
18081815-G-A 15969935-G-A CTS8554 YY+
18115156-A-G 16003276-A-G CTS8621 YY+
18183688-T-G 16071808-T-G FT297606 Y+
18190696-C-T 16078816-C-T Y101583 Y+
18746830-C-T 16634950-C-T V3469 YY+
18806259-G-A 16694379-G-A CTS9297 YY+
18860593-C-T 16748713-C-T CTS9373 Y+
19002733-G-A 16890853-G-A V3680 YY+
19157586-G-A 17045706-G-A CTS9936 YY+
19217310-C-T 17105430-C-T FT181726 YY+
19343388-T-C 17231508-T-C CTS10245 YY+
19551860-G-T 17439980-G-T CTS10574 Y+
21103672-T-C 18941786-T-C Y10784 YY+
21299051-C-T 19137165-C-T YY+
21357286-G-T 19195400-G-T YY+
21368424-T-C 19206538-T-C FT298397 YY+
21460228-G-A 19298342-G-A FT298452 YY+
21482632-A-T 19320746-A-T FT298476 YY+
21640664-T-C 19478778-T-C Y76882 YY+
21741981-G-C 19580095-G-C FT298631 YY+
21801223-G-A 19639337-G-A BY135534 YY+
21830755-T-C 19668869-T-C FT298694 Y+
22246410-C-T 20084524-C-T DYZ19 +
22260576-C-A 20098690-C-A DYZ19 +
22273387-C-T 20111501-C-T BY15725 DYZ19 +
22293860-T-A 20131974-T-A BY48876 DYZ19 +
22362243-G-A 20200357-G-A DYZ19 +
22444134-A-T 20282248-A-T BY46369 DYZ19 +
22446407-A-C 20284521-A-C BY45794 DYZ19 +
22461107-C-T 20299221-C-T BY45457 DYZ19 +
22464256-T-A 20302370-T-A DYZ19 +
22470525-G-T 20308639-G-T BY15726 DYZ19 +
22484174-T-C 20322288-T-C DYZ19 +
22505587-G-C 20343701-G-C DYZ19 +
22505795-C-A 20343909-C-A DYZ19 +
22506024-C-A 20344138-C-A DYZ19 +
22627454-G-A 20465568-G-A BY139611 YY+
22664280-G-C 20502394-G-C CTS10623 YY+
22918083-A-T 20756197-A-T Y10785 YY+
22925169-G-A 20763283-G-A CTS11060 YY+
23024604-T-C 20862718-T-C CTS11230 YY+
23036255-C-T 20874369-C-T FT299173 Y+
23105189-T-G 20943303-T-G FT299214 Y+
23187030-A-C 21025144-A-C CTS11606 Y+
23740713-C-T 21578827-C-T FT332514 +
23762126-C-T 21600240-C-T FT299448 Y+
23807083-A-G 21645197-A-G FT299468 Y+
24514930-C-A 22368783-C-A +
28785361-G-A 26639214-G-A +

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.