Looper

FTDNA: 260814, BigY2: 260814
MDKA Birth: Scotland

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > L1335/S530 > L1065 > Z16325 > S744 > S691 > S695 > FGC9572 > FGC9561

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
260814		BigY2
260814		Manual
Edits
6317878-C-G 6449837-C-G IR3_Dst ***A*
9453268-C-T 9615659-C-T FGC9566 YY++
17277520-CAT-C 15165640-CAT-C +
14079500-G-A 11958794-G-A YY****
23311204-T-TTTCTTTCC 21149318-T-TTTCTTTCC 11×TTCC*
28008237-GA-G 25862090-GA-G P1_Y2 14×AGAA*
22273542-CA-T 20111656-CA-T DYZ19 **
28804542-T-G 26658395-T-G **
58848268-C-T 56742603-G-A **
22505247-T-C 20343361-T-C DYZ19 **
3285165-G-T 3417124-G-T ****
17466983-A-T 15355103-A-T PR2499 **
58848265-T-C 56742606-A-G **
19127667-T-C 17015787-T-C 18×AC**
28802820-G-A 26656673-G-A **
22023250-T-G 19861364-T-G **
6346082-T-TTATA 6478041-T-TTATA 21×TA**
26730200-G-A 24584053-G-A P1_g2 **
22446106-A-G 20284220-A-G DYZ19 **
26141314-C-A 23995167-C-A P1_Y1 **
19138681-C-A 17026801-C-A **
28620558-CAAA-C 26474411-CAAA-C 16×A**
9371317-G-T 9533708-G-T **
28781301-C-A 26635154-C-A **
58876735-C-T 56714136-G-A **
13821333-C-A 11700627-C-A DYZ17 **
20438731-C-A 18276845-C-A P5_Dst **
10763111-C-G **
19775335-G-T 17663455-G-T P5_Prx **
14766597-CT-C 12654666-CT-C 8×T**
7030922-C-A 7162881-C-A **
14562369-A-G 12450569-A-G **
21874809-C-A 19712923-C-A **
10801637-C-T **
10801763-A-C **
20825639-C-A 18663753-C-A P4_Gap **
13880806-C-A 11760100-C-A **
13224495-C-A 11068819-C-A **
10764637-T-A **
24013847-CTATATATATATATATATA-C 21867700-CTATATATATATATATATA-C 21×TA**
14586135-G-T 12474335-G-T **
21556951-TA-T 19395065-TA-T **
19052082-C-A 16940202-C-A **
17433921-C-T 15322041-C-T **
17518734-AC-A 15406854-AC-A **
21447930-C-A 19286044-C-A **
25532978-G-T 23386831-G-T P1_gr1 **
16044244-C-A 13932364-C-A **
4950963-C-A 5082922-C-A **
10940528-C-A **
4416867-CAAAA-C 4548826-CAAAA-C 17×A**
19416685-C-A 17304805-C-A **
22587764-C-A 20425878-C-A **
23128664-C-A 20966778-C-A **
14174786-C-A 12054080-C-A **
14135336-G-T 12014630-G-T **
4537872-C-A 4669831-C-A **
4537882-A-T 4669841-A-T **
10984324-C-A **
10984335-T-C FT439203 **
10842436-G-T **
28506710-C-A 26360563-C-A **
21189643-T-G 19027757-T-G **
13487743-T-TCC 11332067-T-TCC **
10776093-T-TC **
9730561-C-A 9892952-C-A IR3_Prx **
56734764-C-A **
10982283-G-C **
17135658-C-A 15023778-C-A **
21234833-C-A 19072947-C-A **
6365112-C-A 6497071-C-A **
15881884-A-G 13770004-A-G **
22580115-C-A 20418229-C-A **
14563409-C-A 12451609-C-A **
18422813-C-A 16310933-C-A P6_Gap **
20751839-T-TC 18589953-T-TC P4_Prx **
7425136-C-A 7557095-C-A **
10764651-C-T **
10764653-G-T **
2665863-A-C 2797822-A-C **
4160439-C-A 4292398-C-A **
10892474-T-A **
21283377-C-A 19121491-C-A **
13457693-T-C 11302017-T-C **
10983155-C-A **
20645125-T-TC 18483239-T-TC P4_Prx **
9231751-G-A 9394142-G-A **
10880683-C-A **
13480374-G-T 11324698-G-T **
17023417-C-A 14911537-C-A **
3032648-T-C 3164607-T-C **
9941132-C-A 10103523-C-A **
14605221-C-A 12493423-C-A **
11018205-C-A **
8314327-T-G 8446286-T-G **
19464135-G-T 17352255-G-T **
18653484-C-A 16541604-C-A **
6816682-C-A 6948641-C-A **
15034707-C-A 12922795-C-A **
14546751-C-A 12434952-C-A **
10776069-C-T **
10776090-C-A **
19062112-C-A 16950232-C-A **
27958476-C-A 25812329-C-A P1_Y2 **
5709967-C-A 5841926-C-A **
17622754-CCA-C 15510874-CCA-C **
10983924-G-T **
16020768-C-A 13908888-C-A **
10760011-A-C **
2773356-G-T 2905315-G-T **
13196601-G-GT 11040925-G-GT 8×T**
28369908-C-A 26223761-C-A P1_gr2 **
13565568-G-C 11409892-G-C **
17071215-G-GA 14959335-G-GA **
19125202-C-A 17013322-C-A **
22052587-C-A 19890701-C-A **
8216571-A-AT 8348530-A-AT 9×T**
10951590-T-C **
10994401-C-G **
10994422-C-G **
7099866-C-A 7231825-C-A **
16896316-G-A 14784436-G-A **
5084756-C-A 5216715-C-A **
7092487-C-A 7224446-C-A **
10866480-T-C **
27021890-G-GA 24875743-G-GA P1_r4 **
14272296-CT-C 12151590-CT-C 8×T**
15942985-C-A 13831105-C-A **
9927262-C-A 10089653-C-A **
28802816-A-C 26656669-A-C **
8051861-C-A 8183820-C-A **
2948442-C-A 3080401-C-A **
10893903-C-A **
7363153-T-A 7495112-T-A **
14694768-C-A 12582834-C-A **
28461583-C-A 26315436-C-A **
7231588-C-A 7363547-C-A **
15450246-C-A 13338366-C-A **
15011801-C-A 12899889-C-A **
11001917-C-G **
21569950-G-A 19408064-G-A SK2192 **
21569955-C-T 19408069-C-T SK2196 **
15324089-C-T 13212207-C-T **
14691584-T-C 12579650-T-C **
10759989-C-G **
5864790-C-A 5996749-C-A **
8694200-C-A 8826159-C-A **
15239605-C-A 13127691-C-A **
10984319-G-A **
15733852-C-A 13621972-C-A **
17486299-G-A 15374419-G-A **
18754756-C-A 16642876-C-A **
15712372-C-A 13600492-C-A **
15816357-C-A 13704477-C-A **
9761124-C-A 9923515-C-A **
15533269-C-A 13421389-C-A FT355541 **
15922407-G-T 13810527-G-T **
4108322-C-A 4240281-C-A **
15324107-G-A 13212225-G-A M7120 **
14367922-G-T 12247218-G-T **
16354151-C-A 14242271-C-A **
15081548-C-A 12969638-C-A **
16432798-T-C 14320918-T-C **
6934695-C-A 7066654-C-A **
15653752-T-C 13541872-T-C **
16710300-C-A 14598420-C-A **
28631652-C-A 26485505-C-A **
21635270-C-A 19473384-C-A **
17782526-G-T 15670646-G-T **
9967289-C-A 10129680-C-A **
15400220-C-A 13288340-C-A **
3179738-GT-G 3311697-GT-G 11×T**
18153658-C-A 16041778-C-A **
8296605-C-A 8428564-C-A **
23514435-C-A 21352549-C-A **
18906225-A-G 16794345-A-G **
11649633-G-C DYZ17 **
16432809-C-A 14320929-C-A **
18688231-G-A 16576351-G-A **
16159019-A-AG 14047139-A-AG P8_Dst **
11649628-G-C DYZ17 **
15168221-C-A 13056307-C-A FTB6967 **
18880152-C-A 16768272-C-A **
10994347-C-T **
16701669-C-A 14589789-C-A **
2784390-C-A 2916349-C-A **
2786086-A-G 2918045-A-G **
2908969-C-T 3040928-C-T **
3051882-G-A 3183841-G-A **
3130438-C-A 3262397-C-A **
3287289-A-G 3419248-A-G **
3346985-C-G 3478944-C-G **
3348451-G-T 3480410-G-T **
3421445-G-T 3553404-G-T **
3478007-A-C 3609966-A-C **
3535986-G-A 3667945-G-A **
3550529-C-G 3682488-C-G **
3592029-C-A 3723988-C-A **
3592062-C-A 3724021-C-A **
3645865-A-G 3777824-A-G **
3648369-A-G 3780328-A-G **
3658428-C-A 3790387-C-A **
3689140-C-A 3821099-C-A **
3702660-G-T 3834619-G-T **
3814329-C-A 3946288-C-A **
3854065-T-A 3986024-T-A **
3986059-A-C 4118018-A-C **
4162609-C-A 4294568-C-A **
4164932-C-A 4296891-C-A **
4230605-G-T 4362564-G-T **
4373595-C-CT 4505554-C-CT 10×T**
4439701-G-A 4571660-G-A **
4526221-G-T 4658180-G-T **
4563608-C-A 4695567-C-A **
4630864-C-A 4762823-C-A **
4754242-C-A 4886201-C-A **
4926180-C-CA 5058139-C-CA **
4930516-C-T 5062475-C-T **
5010810-T-A 5142769-T-A **
5086890-C-A 5218849-C-A **
5179798-G-T 5311757-G-T **
5200345-G-T 5332304-G-T **
5562273-C-A 5694232-C-A **
5608126-T-A 5740085-T-A **
5620460-C-A 5752419-C-A **
5620488-C-A 5752447-C-A **
5626148-T-C 5758107-T-C **
5669283-C-A 5801242-C-A **
5691993-A-G 5823952-A-G **
5760772-G-T 5892731-G-T **
5844536-C-A 5976495-C-A **
5924605-T-C 6056564-T-C **
6046920-C-A 6178879-C-A **
6092861-C-A 6224820-C-A **
6369139-G-T 6501098-G-T **
6465375-C-A 6597334-C-A **
6478456-C-A 6610415-C-A **
6511928-C-A 6643887-C-A **
6517303-G-T 6649262-G-T **
6534998-G-T 6666957-G-T **
6642884-A-T 6774843-A-T **
6655048-G-A 6787007-G-A **
6776066-G-A 6908025-G-A **
6790251-A-G 6922210-A-G **
6828739-A-G 6960698-A-G **
7029945-G-T 7161904-G-T **
7030859-C-A 7162818-C-A **
7084331-C-A 7216290-C-A **
7085466-C-A 7217425-C-A **
7087915-G-A 7219874-G-A **
7123516-G-T 7255475-G-T **
7165363-G-A 7297322-G-A **
7208433-G-C 7340392-G-C **
7228176-A-G 7360135-A-G **
7231166-C-T 7363125-C-T **
7231167-T-A 7363126-T-A **
7238362-C-A 7370321-C-A **
7238885-C-A 7370844-C-A **
7240876-G-A 7372835-G-A **
7256672-C-A 7388631-C-A **
7312529-G-A 7444488-G-A **
7425129-G-GC 7557088-G-GC **
7425139-C-G 7557098-C-G **
7425150-AG-A 7557109-AG-A **
7425160-T-C 7557119-T-C **
7425166-G-A 7557125-G-A **
7425167-T-A 7557126-T-A **
7425174-T-C 7557133-T-C **
7430720-C-A 7562679-C-A **
7579075-T-C 7711034-T-C **
7631783-C-A 7763742-C-A **
7631899-C-A 7763858-C-A **
7713352-G-A 7845311-G-A **
7756868-C-A 7888827-C-A **
7862136-T-C 7994095-T-C **
7990922-T-A 8122881-T-A **
8178912-A-G 8310871-A-G **
8661069-C-A 8793028-C-A **
8678314-A-C 8810273-A-C **
8741635-C-A 8873594-C-A **
9081542-G-T 9243933-G-T **
9402544-C-T 9564935-C-T **
9427499-G-A 9589890-G-A **
9461017-C-A 9623408-C-A **
9461693-G-T 9624084-G-T **
9524118-C-A 9686509-C-A **
9852766-C-A 10015157-C-A **
9907434-T-C 10069825-T-C **
9966096-G-T 10128487-G-T **
10023688-C-A 10186079-C-A **
10026336-G-T 10188727-G-T **
10033412-C-A 10195803-C-A **
10033549-C-A 10195940-C-A **
10071937-A-G 10234328-A-G **
10664791-A-T **
10664800-C-A FT344877 **
10664805-CA-C **
10664811-A-CC **
10664837-C-T **
10664844-C-T **
10683274-AC-A **
10683278-C-CA **
10744278-A-ATTCTC **
10744497-T-TCCATC **
10744526-C-A **
10752740-T-C **
10760003-T-G **
10823872-C-A **
10828429-T-A **
10831639-T-C **
10840920-T-A **
10847991-G-GCATTCCCCAC **
10884839-T-C **
10884846-C-A **
10892470-C-T **
10922278-C-T **
10947316-T-G **
10951585-C-T **
10967389-C-A **
10972067-G-T **
10975697-A-G **
10983195-C-A **
10984321-A-T **
10994357-T-A **
10998459-G-T **
11008879-A-T **
11030009-C-A **
11030973-CTATTT-C **
11031480-GCATTC-G **
13217257-G-T 11061581-G-T **
13225840-T-C 11070164-T-C **
13234000-C-A 11078324-C-A **
13309615-G-A 11153939-G-A **
13319572-C-A 11163896-C-A **
13326912-C-A 11171236-C-A **
13403318-G-T 11247642-G-T **
13422261-C-A 11266585-C-A **
13474654-G-A 11318978-G-A **
13474676-AC-A 11319000-AC-A **
13474696-T-A 11319020-T-A **
13474734-G-T 11319058-G-T **
13474744-A-T 11319068-A-T **
13484517-A-G 11328841-A-G **
13500911-C-A 11345235-C-A **
13505096-C-A 11349420-C-A **
13565566-T-C 11409890-T-C **
13625313-C-A 11469637-C-A FGC66457 **
13705495-G-GAAT 11549819-G-GAAT DYZ17 **
13705498-A-AT 11549822-A-AT DYZ17 **
13708975-G-T 11553299-G-T DYZ17 **
11643023-T-C DYZ17 **
11643869-G-T DYZ17 **
11644474-A-T DYZ17 **
11646332-GGGCTT-G DYZ17 **
11647050-T-G DYZ17 **
11649641-T-A DYZ17 **
11649646-T-A DYZ17 **
11649647-G-A DYZ17 **
11664148-G-C DYZ17 **
11664152-G-A DYZ17 **
11664157-T-A DYZ17 **
11664160-T-A DYZ17 **
11664165-G-T DYZ17 **
11666695-G-T DYZ17 **
11675895-A-G DYZ17 **
13809232-C-A 11688526-C-A DYZ17 **
13884217-A-C 11763511-A-C **
13938518-C-A 11817812-C-A **
13940364-G-C 11819658-G-C **
13989131-A-T 11868425-A-T **
14041262-G-T 11920556-G-T **
14158132-C-G 12037426-C-G **
14159791-G-T 12039085-G-T **
14235958-T-C 12115252-T-C **
14250553-C-T 12129847-C-T **
14261591-C-A 12140885-C-A **
14307932-T-A 12187226-T-A **
14307935-T-C 12187229-T-C **
14307936-G-A 12187230-G-A **
12376512-C-A **
14500124-G-A 12388329-G-A **
14559407-A-G 12447608-A-G **
14563433-C-A 12451633-C-A **
14605811-C-A 12494013-C-A **
14618347-G-T 12506545-G-T **
14667882-T-C 12555948-T-C **
14720336-C-A 12608404-C-A **
14721778-C-T 12609846-C-T **
14739776-A-G 12627844-A-G **
14785004-A-G 12673074-A-G **
14798585-G-C 12686656-G-C **
14949086-C-CA 12837160-C-CA 8×A**
15127147-A-G 13015234-A-G **
15141582-G-T 13029669-G-T **
15184457-C-A 13072543-C-A **
15202355-T-C 13090441-T-C **
15278992-C-A 13167091-C-A **
15280185-C-A 13168284-C-A **
15286877-TG-T 13174976-TG-T **
15305741-G-T 13193840-G-T **
15324096-G-T 13212214-G-T **
15324097-T-C 13212215-T-C **
15324098-G-A 13212216-G-A **
15324115-G-A 13212233-G-A **
15380366-ACAG-A 13268486-ACAG-A **
15392142-G-T 13280262-G-T **
15530102-C-A 13418222-C-A **
15648866-C-A 13536986-C-A **
15776991-C-A 13665111-C-A **
15823763-C-A 13711883-C-A **
15881869-C-T 13769989-C-T **
15898879-C-A 13786999-C-A **
15988007-C-A 13876127-C-A Y95285 **
16003190-A-G 13891310-A-G **
16015718-CT-C 13903838-CT-C **
16022488-C-A 13910608-C-A **
16028289-T-A 13916409-T-A **
16047132-C-A 13935252-C-A **
16073131-C-A 13961251-C-A **
16114665-T-TTG 14002785-T-TTG P8_Prx 9×TA**
16181254-G-T 14069374-G-T **
16210645-T-G 14098765-T-G **
16246223-TA-T 14134343-TA-T **
16309013-AGGCG-A 14197133-AGGCG-A **
16319297-C-A 14207417-C-A **
16336860-CA-C 14224980-CA-C **
16336871-T-G 14224991-T-G **
16424761-C-G 14312881-C-G **
16432801-G-A 14320921-G-A **
16432803-TAG-T 14320923-TAG-T **
16432807-A-ATG 14320927-A-ATG **
16463498-C-T 14351618-C-T **
16470879-C-A 14358999-C-A **
16503475-A-C 14391595-A-C **
16503492-A-T 14391612-A-T **
16503508-T-C 14391628-T-C **
16516381-G-T 14404501-G-T **
16555232-T-A 14443352-T-A **
16620746-A-G 14508866-A-G **
16663043-T-TA 14551163-T-TA **
16722491-G-T 14610611-G-T **
16757075-C-A 14645195-C-A **
16896304-G-C 14784424-G-C **
17032542-C-A 14920662-C-A **
17038534-C-T 14926654-C-T **
17063619-C-A 14951739-C-A **
17071226-G-GAAA 14959346-G-GAAA 5×GAAA**
17137080-A-G 15025200-A-G **
17175139-G-GC 15063259-G-GC **
17175147-CT-C 15063267-CT-C **
17211546-T-G 15099666-T-G **
17212241-C-T 15100361-C-T **
17276308-A-T 15164428-A-T **
17318316-A-G 15206436-A-G **
17346411-C-A 15234531-C-A **
17374993-C-A 15263113-C-A **
17478411-C-A 15366531-C-A **
17518591-C-A 15406711-C-A **
17545652-G-A 15433772-G-A **
17602437-C-A 15490557-C-A **
17683036-T-C 15571156-T-C **
17749320-C-A 15637440-C-A **
17964015-C-A 15852135-C-A **
18212504-G-A 16100624-G-A **
18516256-T-C 16404376-T-C P6_Dst **
18636618-T-C 16524738-T-C **
18794992-GGGAGGCA-G 16683112-GGGAGGCA-G **
18818709-T-A 16706829-T-A **
18969218-C-A 16857338-C-A **
18990349-C-A 16878469-C-A **
18993430-C-A 16881550-C-A **
19072680-C-A 16960800-C-A **
19112482-T-A 17000602-T-A **
19168685-CAT-C 17056805-CAT-C **
19206600-G-A 17094720-G-A **
19249925-G-T 17138045-G-T **
19312238-TG-T 17200358-TG-T **
19465781-C-A 17353901-C-A FT257498 **
19532765-C-T 17420885-C-T **
19557595-C-A 17445715-C-A **
19609375-C-A 17497495-C-A P5_Prx **
19827584-GGT-G 17715704-GGT-G P5_Prx **
20568500-A-G 18406614-A-G P5_Dst **
20974871-AGCAACAACAAC-A 18812985-AGCAACAACAAC-A P4_Dst **
21116779-T-C 18954893-T-C **
21120193-C-A 18958307-C-A **
21139506-G-A 18977620-G-A **
21182395-GTCTTT-G 19020509-GTCTTT-G **
21201848-C-A 19039962-C-A **
21473840-C-A 19311954-C-A **
21535067-C-A 19373181-C-A **
21551470-G-T 19389584-G-T **
21658623-C-A 19496737-C-A **
21875820-A-T 19713934-A-T **
21875821-C-G 19713935-C-G **
21909593-T-G 19747707-T-G **
21945430-A-T 19783544-A-T **
21994056-C-A 19832170-C-A **
22012123-G-T 19850237-G-T **
22052548-C-A 19890662-C-A **
22080574-C-A 19918688-C-A **
22128732-C-A 19966846-C-A **
22171834-G-T 20009948-G-T **
22352962-C-T 20191076-C-T DYZ19 **
22352992-T-G 20191106-T-G DYZ19 **
22352997-T-C 20191111-T-C DYZ19 **
22433561-C-T 20271675-C-T DYZ19 **
22545568-T-A 20383682-T-A **
22611322-C-A 20449436-C-A **
22800021-T-C 20638135-T-C **
22950023-C-T 20788137-C-T **
22971744-C-A 20809858-C-A **
22988478-C-A 20826592-C-A **
22990032-CTTT-C 20828146-CTTT-C 12×T**
23006261-G-T 20844375-G-T **
23061273-C-A 20899387-C-A **
23062639-G-T 20900753-G-T **
23086558-T-C 20924672-T-C **
23086624-C-A 20924738-C-A **
23186092-T-G 21024206-T-G **
23200499-TGGAGTATG-T 21038613-TGGAGTATG-T **
23231573-A-G 21069687-A-G **
23277311-G-A 21115425-G-A **
23345514-G-A 21183628-G-A **
23345604-A-T 21183718-A-T **
23364340-T-A 21202454-T-A **
23609301-C-G 21447415-C-G **
23818437-T-A 21656551-T-A **
23837780-T-C 21675894-T-C **
24389995-C-A 22243848-C-A **
24402031-C-A 22255884-C-A **
24405024-A-C 22258877-A-C **
25029901-C-A 22883754-C-A g1 **
25560917-C-A 23414770-C-A P1_gr1 **
26073839-T-C 23927692-T-C P1_Y1 **
26260550-A-G 24114403-A-G P1_Y1 **
27240327-CT-C 25094180-CT-C P1_g3 **
27356317-G-T 25210170-G-T P1_g3 **
27714137-G-T 25567990-G-T P1_Y2 **
27801804-AATGGGACTTTTACACAATG-A 25655657-AATGGGACTTTTACACAATG-A P1_Y2 **
27916273-A-G 25770126-A-G P1_Y2 **
28479076-C-A 26332929-C-A **
28484422-C-A 26338275-C-A **
28515543-C-A 26369396-C-A **
28544956-T-C 26398809-T-C **
28581499-G-A 26435352-G-A **
28612283-T-C 26466136-T-C **
28658435-G-C 26512288-G-C **
28716364-C-A 26570217-C-A **
28726847-C-T 26580700-C-T **
28726851-G-A 26580704-G-A **
28726853-T-C 26580706-T-C **
28726854-G-A 26580707-G-A **
28731357-C-A 26585210-C-A **
28732930-C-A 26586783-C-A **
28763876-T-G 26617729-T-G **
28764037-T-A 26617890-T-A **
28803628-G-A 26657481-G-A **
28803629-A-C 26657482-A-C **
28803639-T-A 26657492-T-A **
56831526-G-A **
56839324-C-A **
56850675-C-T **
56851111-C-A **
56858810-C-A **
22505387-TG-T 20343501-TG-T DYZ19 ***
25472759-G-A 23326612-G-A P2_r2 ***
13725209-C-T 11569533-C-T DYZ17 ***
13647963-A-G 11492287-A-G DYZ17 ***
13647965-G-A 11492289-G-A FGC67752 Z44952 DYZ17 ***
13647969-T-C 11492293-T-C DYZ17 ***
26169184-C-CT 24023037-C-CT P1_Y1 10×T***
59004587-G-A 56858440-G-A ***
13701328-G-T 11545652-G-T DYZ17 ***
13701332-T-C 11545656-T-C DYZ17 ***
13701336-A-T 11545660-A-T DYZ17 ***
13701339-A-G 11545663-A-G DYZ17 ***
13701347-T-C 11545671-T-C DYZ17 ***
13477327-G-A 11321651-G-A ***
9745916-T-C 9908307-T-C ***
9745921-T-C 9908312-T-C ***
13680761-G-C 11525085-G-C DYZ17 ***
13680804-T-A 11525128-T-A DYZ17 ***
13850305-T-A 11729599-T-A DYZ17 ***
13850326-G-C 11729620-G-C DYZ17 ***
13142233-T-C 10631719-T-C ***
13866751-G-A 11746045-G-A DYZ17 ***
22339611-T-C 20177725-T-C FGC2886 DYZ19 ***
22339614-T-A 20177728-T-A BY22945 DYZ19 ***
22339620-C-T 20177734-C-T BY22461 DYZ19 ***
58975709-C-T 56829562-C-T ***
20801596-C-CTCTT 18639710-C-CTCTT P4_Prx 11×TCTT***
13450476-T-C 11294800-T-C ***
22247018-A-G 20085132-A-G DYZ19 ***
13810110-G-A 11689404-G-A DYZ17 5×ATGGA***
13472425-C-A 11316749-C-A ***
13676749-G-C 11521073-G-C DYZ17 ***
13810068-CGTTTGTAATG-C 11689362-CGTTTGTAATG-C DYZ17 ***
13803072-A-G 11682366-A-G DYZ17 ***
13850300-T-A 11729594-T-A DYZ17 ***
13850306-G-T 11729600-G-T DYZ17 ***
13850310-T-A 11729604-T-A DYZ17 ***
13850311-G-A 11729605-G-A DYZ17 ***
13850347-G-T 11729641-G-T DYZ17 ***
13477148-C-T 11321472-C-T ***
10024072-C-G 10186463-C-G ***
13862039-T-A 11741333-T-A DYZ17 ***
22336090-G-T 20174204-G-T DYZ19 ***
13805378-A-C 11684672-A-C DYZ17 ***
58974067-A-G 56827920-A-G ***
13472434-T-C 11316758-T-C ***
26882139-TA-T 24735992-TA-T P1_r3 11×A***
13850349-A-T 11729643-A-T DYZ17 ***
13702761-A-G 11547085-A-G DYZ17 ***
13833722-G-A 11713016-G-A DYZ17 ***
13833752-G-C 11713046-G-C FT328608 DYZ17 ***
13833789-A-G 11713083-A-G DYZ17 ***
13805376-G-T 11684670-G-T DYZ17 ***
13452658-T-C 11296982-T-C ***
13846404-A-G 11725698-A-G DYZ17 ***
58822186-C-G 56768685-G-C ***
13723314-A-C 11567638-A-C DYZ17 ***
13142169-G-T 10631655-G-T ***
13142172-C-T 10631658-C-T ***
13142176-C-T 10631662-C-T ***
13142214-T-G 10631700-T-G ***
13479209-T-C 11323533-T-C ***
13479211-G-C 11323535-G-C ***
6226106-C-T 6358065-C-T IR3_Dst ***
13140290-G-C 10629776-G-C ***
13452559-TCCACA-T 11296883-TCCACA-T ***
13452568-C-T 11296892-C-T ***
13455456-TTCTAC-T 11299780-TTCTAC-T ***
13472419-G-A 11316743-G-A ***
13472424-C-G 11316748-C-G ***
13647993-C-A 11492317-C-A DYZ17 ***
13663906-G-A 11508230-G-A DYZ17 ***
13701354-C-G 11545678-C-G DYZ17 ***
13701359-G-C 11545683-G-C DYZ17 ***
13802865-G-A 11682159-G-A DYZ17 ***
13803038-GACTGC-G 11682332-GACTGC-G DYZ17 ***
13833724-G-A 11713018-G-A DYZ17 ***
13846379-GGAATCGAATATAAAT-G 11725673-GGAATCGAATATAAAT-G DYZ17 ***
13846400-A-G 11725694-A-G DYZ17 ***
13850288-A-C 11729582-A-C DYZ17 ***
13850289-A-T 11729583-A-T DYZ17 ***
13850292-G-A 11729586-G-A DYZ17 ***
13850299-A-T 11729593-A-T DYZ17 ***
13850317-G-T 11729611-G-T DYZ17 ***
13850328-A-G 11729622-A-G DYZ17 ***
17323269-CGAAG-C,CG 15211389-CGAAG-C,CG 13×GAAG***
20032439-C-T 17920559-C-T P5_Prx ***
22336175-G-T 20174289-G-T DYZ19 ***
24100310-C-G 21954163-C-G P3_b1 ***
24121235-C-T 21975088-C-T P3_b1 ***
25381336-G-A 23235189-G-A P2_r2 ***
25885794-G-GGAAAGAAAGAAA 23739647-G-GGAAAGAAAGAAA P1_Y1 15×GAAA***
25954144-CT-C 23807997-CT-C P1_Y1 ***
26183544-A-C 24037397-A-C ZS2476 P1_Y1 ***
27232111-T-C,TTTTCTTTCTTTCTTTC 25085964-T-C,TTTTCTTTCTTTCTTTC P1_g3 18×TTTC***
58973109-C-G 56826962-C-G ***
58973123-C-G 56826976-C-G ***
58975958-T-A 56829811-T-A ***
59004503-G-GA 56858356-G-GA ***
5644813-GTA-G 5776772-GTA-G ***
13140153-C-CTCCAT,T 10629639-C-CTCCAT,T 12×TCCAT***
13448753-C-G 11293077-C-G ***
8454427-TTGTG-T 8586386-TTGTG-T 10×TG***
13832426-C-A,G 11711720-C-A,G DYZ17 ***
27791904-C-CTCT,T 25645757-C-CTCT,T P1_Y2 25×TCT***
17441175-AATAT-A,AAT 15329295-AATAT-A,AAT 20×AT***
11643719-G-A DYZ17 ***
17662010-ATGTGTG-A,ATG 15550130-ATGTGTG-A,ATG 21×TG***
10657370-C-T ***
13457736-C-A 11302060-C-A ***
56833292-A-G ***
11643664-G-A DYZ17 ***
19547815-TA-T,TAA 17435935-TA-T,TAA 16×A***
56858161-A-C ***
13860062-C-T 11739356-C-T DYZ17 ***
23134114-AT-A 20972228-AT-A 8×T***
8575996-T-G 8707955-T-G ***
18398224-C-T 16286344-C-T P6_Gap ***
13457722-A-ATTTCC 11302046-A-ATTTCC ***
11033239-G-T ***
19054342-CTT-C,CTTT 16942462-CTT-C,CTTT 16×T***
14324894-CTTTTT-C 12204188-CTTTTT-C 26×T***
5957075-C-CAT 6089034-C-CAT ***
15690125-C-A 13578245-C-A ***
28591210-A-G 26445063-A-G ***
6803936-C-A 6935895-C-A ***
5927029-G-T 6058988-G-T ***
14819674-CTTT-C,CTT 12707741-CTTT-C,CTT 15×T***
8125046-AAGAA-A,AAGAAGAGAAGAGAG 8257005-AAGAA-A,AAGAAGAGAAGAGAG ***
10673788-C-A ***
5190004-GAA-G,GAAA 5321963-GAA-G,GAAA 16×A***
6784289-C-A 6916248-C-A ***
7221193-C-A 7353152-C-A ***
7359791-AATAT-A,AAT 7491750-AATAT-A,AAT 12×AT***
7991106-C-A 8123065-C-A ***
8209442-C-A 8341401-C-A ***
9034655-CA-C,CAA 9197046-CA-C,CAA 12×A***
9310599-T-C 9472990-T-C ***
9852376-C-A 10014767-C-A ***
10682539-T-A,C ***
10772473-C-CTCCAA ***
10782877-CT-C ***
10841000-TC-T ***
13457741-CA-AAGT,C 11302065-CA-AAGT,C ***
13478048-C-G 11322372-C-G ***
13596570-G-T 11440894-G-T ***
14823822-G-A 12711889-G-A ***
14823824-G-A 12711891-G-A ***
14823828-G-A 12711895-G-A ***
14992967-C-A 12881052-C-A ***
15126547-C-T 13014634-C-T ***
15865549-CTTT-C,CT 13753669-CTTT-C,CT 22×T***
15941283-C-T 13829403-C-T ***
19250727-A-G 17138847-A-G ***
21163189-C-A 19001303-C-A ***
21238865-T-C 19076979-T-C ***
21244264-T-C 19082378-T-C ***
22520594-T-C 20358708-T-C ***
23011062-T-A 20849176-T-A ***
23419293-CATTCTGTAGGTTGTCTGTGTACTCTGTTGATAGT-C 21257407-CATTCTGTAGGTTGTCTGTGTACTCTGTTGATAGT-C ***
28591208-C-T 26445061-C-T ***
28591213-C-T 26445066-C-T FT225238 ***
56833594-A-AATCTG,ATTATG ***
56884299-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual18947903-A-G16836023-A-GChromo2