Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > P295[P] > M242[Q] > L472 > L56 > L53 > L54 > M930 > M3 > M884 > Z5915 > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
HG01967
21167089-A-T 19005203-A-T A241A231 ZS2741 YY+
3063186-A-G 3195145-A-G +
3093907-A-C 3225866-A-C +
3160924-G-C 3292883-G-C +
3204972-C-T 3336931-C-T +
3262844-T-C 3394803-T-C +
3309259-C-T 3441218-C-T +
3309273-G-C 3441232-G-C +
3710935-T-C 3842894-T-C +
3900205-T-C 4032164-T-C +
3913471-A-T 4045430-A-T +
3918070-G-A 4050029-G-A +
4068569-C-T 4200528-C-T +
4074789-G-A 4206748-G-A +
4221091-G-T 4353050-G-T +
4268541-T-C 4400500-T-C +
4439803-T-A 4571762-T-A +
4469371-A-G 4601330-A-G +
4475584-C-T 4607543-C-T +
4510885-C-T 4642844-C-T +
4724534-C-G 4856493-C-G +
4761582-A-G 4893541-A-G +
5053205-C-G 5185164-C-G +
5293772-T-C 5425731-T-C +
5451761-A-G 5583720-A-G +
5465872-A-C 5597831-A-C +
5783862-A-G 5915821-A-G +
5986886-G-A 6118845-G-A +
6001713-C-T 6133672-C-T +
6453287-G-A 6585246-G-A +
6473566-G-T 6605525-G-T +
6995437-C-T 7127396-C-T Z35762 YY+
7073396-C-T 7205355-C-T Z35763 YY+
7109956-T-C 7241915-T-C Z35764 YY+
7164758-G-A 7296717-G-A Z35765 YY+
7186620-C-T 7318579-C-T Z35766 YY+
7358042-C-T 7490001-C-T Z43888 YY+
7537891-C-T 7669850-C-T Z43889 YY+
7623318-A-G 7755277-A-G Z43890 YY+
7682822-C-G 7814781-C-G FT333991 YY+
7864981-C-T 7996940-C-T FT334098 YY+
8040439-T-C 8172398-T-C FT334202 YY+
8055860-G-A 8187819-G-A FT334216 YY+
8228630-A-G 8360589-A-G FT334329 YY+
8237103-C-T 8369062-C-T FT334334 Y+
8327074-G-A 8459033-G-A FT334388 YY+
8372339-T-C 8504298-T-C FT334419 YY+
8424275-G-A 8556234-G-A FT334461 YY+
8505510-G-T 8637469-G-T FT334514 YY+
8594272-G-A 8726231-G-A Y47596 YY+
8624715-T-A 8756674-T-A FT334606 YY+
8642261-T-C 8774220-T-C FT334617 YY+
8705817-C-T 8837776-C-T FT334674 YY+
8781054-A-G 8913013-A-G FT334735 YY+
8979504-G-A 9141895-G-A FT334828 Y+
9038948-AG-A 9201339-AG-A +
9444433-T-C 9606824-T-C FT334979 YY+
9905545-C-A 10067936-C-A FT20602 Y+
9953994-G-A 10116385-G-A BY82130 Y+
10011407-A-G 10173798-A-G Y+
13219688-A-G 11064012-A-G +
13232681-C-T 11077005-C-T +
13455225-C-T 11299549-C-T +
13456552-C-G 11300876-C-G +
13457552-C-T 11301876-C-T +
13549940-A-G 11394264-A-G +
13648540-C-T 11492864-C-T +
13849687-G-A 11728981-G-A FTA16101 +
13940461-A-G 11819755-A-G FT335125 Y+
14063382-A-G 11942676-A-G FT335244 YY+
14085050-T-C 11964344-T-C FT335262 YY+
14142734-G-T 12022028-G-T FT335298 YY+
14202842-C-T 12082136-C-T BY93821 YY+
14335942-G-A 12215237-G-A FT335491 YY+
14420229-G-A 12299504-G-A FT335547 YY+
14454034-G-A 12333307-G-A Y91461 YY+
14589950-T-G 12478150-T-G Y49694 YY+
14703657-TATATA-T 12591723-TATATA-T +
14770628-G-C 12658697-G-C FT335755 YY+
14989731-A-C 12877816-A-C FT335895 YY+
15170051-C-G 13058137-C-G FT264111 Y+
15218602-C-T 13106688-C-T FT336007 Y+
15264967-C-T 13153056-C-T BY100540 YY+
15598732-G-C 13486852-G-C FT336255 Y+
15735359-C-T 13623479-C-T YY+
16401513-A-G 14289633-A-G FT336758 YY+
16446386-G-A 14334506-G-A FT336805 YY+
16616759-C-T 14504879-C-T FT336923 YY+
16662324-C-T 14550444-C-T FT336961 YY+
16728921-G-T 14617041-G-T FT336997 Y+
16796306-G-A 14684426-G-A FT337039 YY+
16918704-C-A 14806824-C-A FT190648 YY+
16918710-G-A 14806830-G-A FT337104 YY+
17028861-A-C 14916981-A-C FT337173 YY+
17076974-T-C 14965094-T-C FT337198 YY+
17077856-G-A 14965976-G-A BY112157 YY+
17362393-G-A 15250513-G-A FT337382 YY+
17396079-A-T 15284199-A-T FT337412 YY+
17519212-T-C 15407332-T-C FT337495 Y+
17634120-C-T 15522240-C-T FT337572 YY+
17731983-G-A 15620103-G-A FT337631 Y+
17749678-C-T 15637798-C-T FT337649 YY+
17839524-G-A 15727644-G-A FT337728 Y+
17877073-T-C 15765193-T-C FT337759 YY+
18001762-T-C 15889882-T-C P7_Gap Y+
18072553-T-C 15960673-T-C FT337878 YY+
18079087-C-G 15967207-C-G FT337883 YY+
18101870-G-T 15989990-G-T FT337901 YY+
18246550-A-T 16134670-A-T FT338015 Y+
18426677-G-A 16314797-G-A FT338078 P6_Gap +
19084980-G-A 16973100-G-A Y+
19086900-G-C 16975020-G-C FT338466 YY+
19132675-C-A 17020795-C-A YY+
19232131-C-T 17120251-C-T FT338582 YY+
19240091-T-C 17128211-T-C FT338594 YY+
19336609-C-A 17224729-C-A FT338662 YY+
19449649-A-G 17337769-A-G FT338758 YY+
19551818-A-G 17439938-A-G FT338828 Y+
21119143-A-G 18957257-A-G Y+
21172254-G-C 19010368-G-C YY+
21370430-A-G 19208544-A-G YY+
21385785-C-A 19223899-C-A BY132499 YY+
21542267-G-C 19380381-G-C YY+
21593571-C-G 19431685-C-G YY+
21954626-G-A 19792740-G-A M4609 YY+
22120229-A-G 19958343-A-G YY+
22181220-C-A 20019334-C-A YY+
22266183-G-A 20104297-G-A DYZ19 +
22266250-C-A 20104364-C-A DYZ19 +
22266251-A-G 20104365-A-G DYZ19 +
22444754-A-G 20282868-A-G DYZ19 +
22458813-T-C 20296927-T-C BY15803 DYZ19 +
22477421-A-G 20315535-A-G A12929 DYZ19 +
22479358-G-T 20317472-G-T DYZ19 +
22479373-G-T 20317487-G-T DYZ19 +
22547416-C-A 20385530-C-A Y+
22604193-T-C 20442307-T-C YY+
22682048-G-A 20520162-G-A YY+
22856255-C-G 20694369-C-G Y+
22892135-G-A 20730249-G-A FT332127 YY+
22895385-T-C 20733499-T-C YY+
22977480-G-T 20815594-G-T YY+
23008916-T-G 20847030-T-G Y+
23020553-G-A 20858667-G-A Y79057 YY+
23186802-A-G 21024916-A-G Y+
23238515-C-T 21076629-C-T Y+
23497229-G-A 21335343-G-A YY+
23626597-C-A 21464711-C-A YY+
23651037-A-G 21489151-A-G Y+
23779705-C-T 21617819-C-T Y+
23787715-A-G 21625829-A-G +
23851236-C-T 21689350-C-T FT340535 Y+
24493794-A-G 22347647-A-G Y44611 +
26022839-T-C 23876692-T-C P1_Y1 +
28530345-C-G 26384198-C-G Y+
28651074-T-G 26504927-T-G +
28813367-G-A 26667220-G-A +

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.