Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > M2335 > F346[NO] > P191[O] > Exact position not yet finalized.

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STR1kG
HG00406
21488243-G-T 19326357-G-T F24365 YY+
8815666-T-A 8947625-T-A Y+
22840211-C-T 20678325-C-T FTB64815 Y+
2674650-T-G 2806609-T-G FT294530 Y+
2788388-T-A 2920347-T-A FT294567 YY+
2887959-C-G 3019918-C-G YY+
3004477-T-C 3136436-T-C FT315713 +
3742787-T-G 3874746-T-G FT318335 +
3954635-G-T 4086594-G-T +
4013293-G-T 4145252-G-T +
4152205-A-C 4284164-A-C FT319698 +
4204709-A-T 4336668-A-T FT319886 +
5161970-T-G 5293929-T-G FT322943 +
5604764-C-A 5736723-C-A FT324459 +
5985188-G-T 6117147-G-T FT325716 +
6000796-G-T 6132755-G-T +
6675897-A-G 6807856-A-G YY+
6703216-C-G 6835175-C-G CTS351 YY+
6941646-A-G 7073605-A-G F15475 YY+
7699646-T-G 7831605-T-G MF2446 YY+
7725173-C-T 7857132-C-T F16179 YY+
7838962-G-A 7970921-G-A F16308 YY+
7909601-T-C 8041560-T-C F16412 YY+
8231506-T-C 8363465-T-C MF2447 YY+
8479810-G-C 8611769-G-C MF2448 YY+
8482691-G-C 8614650-G-C F17114 YY+
8483571-A-G 8615530-A-G MF2449 YY+
8488667-C-T 8620626-C-T F17128 YY+
8539018-T-C 8670977-T-C F17204 YY+
9968890-T-C 10131281-T-C Y+
10076056-C-A 10238447-C-A +
13141437-T-C 10630923-T-C +
13194814-C-G 11039138-C-G +
13351269-T-C 11195593-T-C +
13593934-G-A 11438258-G-A MF2462 +
13616993-G-A 11461317-G-A +
13632503-C-T 11476827-C-T BY32171 +
13663590-T-A 11507914-T-A +
13830915-T-C 11710209-T-C FT328588 +
13992423-G-C 11871717-G-C YY+
13995681-G-A 11874975-G-A CTS1635 Y+
14130756-C-T 12010050-C-T FT295989 Y+
14304551-A-G 12183845-A-G CTS2438 Y+
14465913-C-A 12345186-C-A F18973 YY+
14575125-A-G 12463325-A-G FT296218 Y+
14592526-C-T 12480726-C-T BY96680 YY+
14646656-T-C 12534720-T-C CTS3077 YY+
14695846-G-A 12583912-G-A FT296251 YY+
14700230-C-T 12588296-C-T YY+
15125788-G-A 13013875-G-A F19580 YY+
15128995-G-A 13017082-G-A F19581 YY+
15410137-C-T 13298257-C-T F19770 YY+
15478424-G-A 13366544-G-A F19829 YY+
15534922-T-C 13423042-T-C CTS4271 YY+
15880703-A-G 13768823-A-G CTS4869 YY+
15961695-A-G 13849815-A-G Y+
16246410-C-T 14134530-C-T CTS5392 YY+
16455230-G-C 14343350-G-C CTS5720 YY+
16660961-C-A 14549081-C-A YY+
16774366-A-T 14662486-A-T FT297005 YY+
16915716-C-A 14803836-C-A F21199 YY+
16979114-C-G 14867234-C-G FT297078 Y+
16979317-G-C 14867437-G-C CTS6560 Y+
17308415-A-G 15196535-A-G FT297218 YY+
17373434-G-C 15261554-G-C FT196472 Y+
17490759-A-T 15378879-A-T F21828 YY+
17492695-C-T 15380815-C-T F21830 YY+
17535397-G-C 15423517-G-C FT297314 Y+
17559981-C-G 15448101-C-G CTS7607 YY+
17569672-G-A 15457792-G-A MF2451 YY+
17636714-A-T 15524834-A-T YY+
17839633-A-C 15727753-A-C FT297436 Y+
17868619-G-C 15756739-G-C F22213 YY+
17895493-C-T 15783613-C-T F2629 YY+
17906366-T-C 15794486-T-C CTS8267 YY+
17930664-G-A 15818784-G-A FGC56519 Y+
18074207-C-T 15962327-C-T YY+
18077646-T-G 15965766-T-G F22415 YY+
18098034-C-A 15986154-C-A F22449 YY+
18416659-C-A 16304779-C-A MF2452 P6_Gap +
18637873-A-T 16525993-A-T YY+
18814652-G-A 16702772-G-A MF2453 YY+
18977575-G-C 16865695-G-C FT297860 YY+
19136941-A-G 17025061-A-G CTS9910 YY+
19139178-C-T 17027298-C-T F23349 YY+
19268481-G-A 17156601-G-A YY+
19370015-C-A 17258135-C-A YY+
19402611-T-C 17290731-T-C FT298069 YY+
19417524-G-T 17305644-G-T F23665 YY+
19561698-C-T 17449818-C-T Y+
20063231-C-A 17951351-C-A MF2454 P5_Gap +
20838399-G-C 18676513-G-C MF2455 P4_Gap +
21142553-C-A 18980667-C-A MF2456 YY+
21351555-G-A 19189669-G-A FT298386 Y+
21486517-A-G 19324631-A-G F24362 YY+
21509917-T-A 19348031-T-A MF2457 YY+
22197766-G-T 20035880-G-T FT298916 Y+
22279699-C-G 20117813-C-G DYZ19 +
22281623-C-A 20119737-C-A DYZ19 +
22438329-A-T 20276443-A-T DYZ19 +
22469250-A-T 20307364-A-T DYZ19 +
22469683-A-T 20307797-A-T DYZ19 +
22471747-T-A 20309861-T-A A10937A10946 DYZ19 +
22507292-G-T 20345406-G-T DYZ19 +
22516748-A-G 20354862-A-G MF2458 Y+
22681750-C-G 20519864-C-G F25365 YY+
22853000-G-T 20691114-G-T FT299106 Y+
22871210-G-T 20709324-G-T F25536 YY+
22933667-C-G 20771781-C-G FT299135 YY+
23137087-A-T 20975201-A-T CTS11496 YY+
23155890-C-T 20994004-C-T CTS11539 YY+
23186231-G-A 21024345-G-A FT299255 Y+
23505240-G-T 21343354-G-T MF2459 YY+
23593275-C-G 21431389-C-G F26262 YY+
23742681-G-C 21580795-G-C MF2460 +
24394799-A-G 22248652-A-G MF2461 Y+
24476285-A-G 22330138-A-G F26688 Y+
27266328-G-A 25120181-G-A P1_g3 +
28528541-A-G 26382394-A-G FT299628 +
28584395-A-G 26438248-A-G FT299649 +
28639027-G-A 26492880-G-A Z33353 +

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.