1k Genomes
1kG: DNK02Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | 1kG DNK02 |
---|---|---|---|---|---|---|---|---|
8831143-G-A | 8963102-G-A | S27900 | FGC39545 | Y | Y | + | ||
3474558-AG-A | 3606517-AG-A | + | ||||||
3882066-C-T | 4014025-C-T | FT694 | + | |||||
8754504-G-A | 8886463-G-A | Y38176 | Y | Y | + | |||
2663889-C-A | 2795848-C-A | P210 M41 | Y | Y | + | |||
2675514-G-T | 2807473-G-T | Y27160 | Y | + | ||||
2724561-C-G | 2856520-C-G | Z20779 | Y | Y | + | |||
2799434-G-A | 2931393-G-A | Z20780 FGC24773 | Y | Y | + | |||
2931206-TC-T | 3063165-TC-T | + | ||||||
2966494-A-T | 3098453-A-T | FT368 | + | |||||
3005691-A-G | 3137650-A-G | FT379 | + | |||||
3031713-A-G | 3163672-A-G | FT14830 | + | |||||
3052078-G-A | 3184037-G-A | FT208265 | + | |||||
3089728-G-A | 3221687-G-A | FT14890 | + | |||||
3149841-C-T | 3281800-C-T | FT439 | + | |||||
3151659-G-T | 3283618-G-T | FT316245 | + | |||||
3199594-C-T | 3331553-C-T | FT452 | + | |||||
3225943-T-C | 3357902-T-C | Y27162 | + | |||||
3353256-T-C | 3485215-T-C | FT316922 | + | |||||
3403741-C-T | 3535700-C-T | Y27163 | + | |||||
3426376-C-T | 3558335-C-T | FT529 | + | |||||
3436968-G-C | 3568927-G-C | FT533 | + | |||||
3582694-C-A | 3714653-C-A | FT194838 | + | |||||
3583083-G-T | 3715042-G-T | FT583 | + | |||||
3597131-G-T | 3729090-G-T | FT590 | + | |||||
3654836-A-T | 3786795-A-T | FT613 | + | |||||
3673026-A-T | 3804985-A-T | FT620 | + | |||||
3767926-G-A | 3899885-G-A | + | ||||||
3778777-A-T | 3910736-A-T | FT663 | + | |||||
3786209-G-T | 3918168-G-T | FT666 | + | |||||
3816379-C-G | 3948338-C-G | FT677 | + | |||||
3822299-G-C | 3954258-G-C | FT678 | + | |||||
3838825-C-T | 3970784-C-T | FT685 | + | |||||
3959435-A-G | 4091394-A-G | FT726 | + | |||||
3964844-T-C | 4096803-T-C | FT208444 | + | |||||
3995588-C-A | 4127547-C-A | FT741 | + | |||||
4001862-G-A | 4133821-G-A | Y27165 | + | |||||
4060185-G-C | 4192144-G-C | FT764 | + | |||||
4109208-A-C | 4241167-A-C | Y27166 | + | |||||
4174193-A-G | 4306152-A-G | FT796 | + | |||||
4220474-A-T | 4352433-A-T | Y25289 | + | |||||
4225713-G-A | 4357672-G-A | + | ||||||
4239385-C-T | 4371344-C-T | FT811 | + | |||||
4245262-C-T | 4377221-C-T | FT814 | + | |||||
4311457-T-A | 4443416-T-A | FT834 | + | |||||
4370968-A-G | 4502927-A-G | Y27167 | + | |||||
4391382-CTT-C | 4523341-CTT-C | + | ||||||
4421249-C-A | 4553208-C-A | + | ||||||
4591235-C-G | 4723194-C-G | + | ||||||
4684200-G-C | 4816159-G-C | FT938 | + | |||||
4756164-T-A | 4888123-T-A | FT141704 | + | |||||
4816307-TA-T | 4948266-TA-T | + | ||||||
4946972-C-A | 5078931-C-A | FT1033 | + | |||||
5116271-G-A | 5248230-G-A | + | ||||||
5117893-A-G | 5249852-A-G | FT322806 | + | |||||
5184246-G-T | 5316205-G-T | Y27168 | + | |||||
5245591-A-C | 5377550-A-C | FT1129 | + | |||||
5252885-C-G | 5384844-C-G | FT1135 | + | |||||
5291789-A-G | 5423748-A-G | FT1146 | + | |||||
5299901-G-A | 5431860-G-A | FT1150 | + | |||||
5301011-C-G | 5432970-C-G | FT323457 | + | |||||
5312650-G-A | 5444609-G-A | FT1154 | + | |||||
5438757-A-G | 5570716-A-G | FT1197 | + | |||||
5441302-C-T | 5573261-C-T | + | ||||||
5454717-G-A | 5586676-G-A | FT1203 | + | |||||
5645997-G-A | 5777956-G-A | FT1264 | + | |||||
5701424-C-T | 5833383-C-T | FT324815 | + | |||||
5710260-C-T | 5842219-C-T | + | ||||||
5774559-T-G | 5906518-T-G | + | ||||||
5806717-G-C | 5938676-G-C | Y25290 | + | |||||
5945945-C-T | 6077904-C-T | FT1389 | + | |||||
6018862-G-A | 6150821-G-A | FT1418 | + | |||||
6036002-G-A | 6167961-G-A | FT1426 | + | |||||
6046710-C-A | 6178669-C-A | FT1432 | + | |||||
6075768-G-A | 6207727-G-A | FT1452 | + | |||||
6090201-G-A | 6222160-G-A | + | ||||||
6357225-A-G | 6489184-A-G | BY45860 | + | |||||
6405302-C-A | 6537261-C-A | Y27170 | + | |||||
6593076-G-A | 6725035-G-A | Y27171 | + | |||||
6629008-A-G | 6760967-A-G | Y25291 | Y | Y | + | |||
6633711-G-A | 6765670-G-A | Y25292 | Y | Y | + | |||
6720493-A-C | 6852452-A-C | Z20781 | Y | Y | + | |||
6721443-C-T | 6853402-C-T | Y25293 | Y | + | ||||
6723783-A-T | 6855742-A-T | Y25294 | Y | + | ||||
6743244-C-A | 6875203-C-A | Z20782 | Y | Y | + | |||
6752894-T-C | 6884853-T-C | Z20783 | Y | Y | + | |||
6779658-C-A | 6911617-C-A | SK971 | Y | Y | + | |||
6805439-C-G | 6937398-C-G | Y25295 | Y | Y | + | |||
6826024-G-A | 6957983-G-A | Y38104 | Y | Y | + | |||
6859326-T-A | 6991285-T-A | Y25296 | Y | Y | + | |||
6861400-A-G | 6993359-A-G | Y25297 | Y | Y | + | |||
6869240-C-G | 7001199-C-G | Y24819 | Y | Y | + | |||
6874798-T-G | 7006757-T-G | Y38174 | Y | Y | + | |||
6952197-A-G | 7084156-A-G | Y25298 | Y | Y | + | |||
6989185-C-T | 7121144-C-T | Y25299 | Y | Y | + | |||
6992975-A-G | 7124934-A-G | FT333632 | Y | Y | + | |||
7037100-A-C | 7169059-A-C | Y25300 | Y | Y | + | |||
7072454-G-A | 7204413-G-A | Y25301 | Y | Y | + | |||
7144232-G-A | 7276191-G-A | Y27173 | Y | Y | + | |||
7165541-C-T | 7297500-C-T | Y25302 | Y | Y | + | |||
7193710-C-A | 7325669-C-A | Y25303 | Y | Y | + | |||
7226064-C-G | 7358023-C-G | Y25304 | Y | Y | + | |||
7245108-C-T | 7377067-C-T | SK962 | Y | Y | + | |||
7312395-C-T | 7444354-C-T | Y25305 | Y | Y | + | |||
7430939-C-G | 7562898-C-G | Y25306 | Y | Y | + | |||
7434175-G-C | 7566134-G-C | Y25307 | Y | + | ||||
7435746-G-A | 7567705-G-A | Y27174 | Y | + | ||||
7481000-A-C | 7612959-A-C | IR1_L | + | |||||
7512707-A-G | 7644666-A-G | FT333889 | Y | + | ||||
7555105-C-A | 7687064-C-A | Y | Y | + | ||||
7585162-G-A | 7717121-G-A | Y27175 | Y | Y | + | |||
7602659-G-A | 7734618-G-A | Y25308 | Y | Y | + | |||
7603147-G-A | 7735106-G-A | Y27176 | Y | Y | + | |||
7621623-A-G | 7753582-A-G | Y27177 | Y | + | ||||
7632200-C-T | 7764159-C-T | Y | + | |||||
7634048-T-C | 7766007-T-C | Y25309 | Y | Y | + | |||
7638975-C-T | 7770934-C-T | Y25310 | Y | Y | + | |||
7687799-C-T | 7819758-C-T | Y25311 | Y | Y | + | |||
7742398-C-T | 7874357-C-T | Y25312 | Y | Y | + | |||
7763275-G-A | 7895234-G-A | Y25313 | Y | Y | + | |||
7767779-A-G | 7899738-A-G | Y27178 | Y | Y | + | |||
7907009-G-A | 8038968-G-A | Y25314 | Y | Y | + | |||
7914732-G-A | 8046691-G-A | Y | Y | + | ||||
7926043-A-G | 8058002-A-G | Y25315 | Y | Y | + | |||
7929846-C-T | 8061805-C-T | Y25316 | Y | Y | + | |||
7936799-G-A | 8068758-G-A | Y27179 | Y | Y | + | |||
8002267-C-T | 8134226-C-T | Y25317 | Y | Y | + | |||
8003525-T-C | 8135484-T-C | Y25318 | Y | + | ||||
8008263-G-T | 8140222-G-T | Y27180 | Y | Y | + | |||
8095655-T-C | 8227614-T-C | Y25319 | Y | Y | + | |||
8204554-C-T | 8336513-C-T | Y25320 | Y | Y | + | |||
8240207-G-A | 8372166-G-A | M10445 | Y | Y | + | |||
8258168-A-G | 8390127-A-G | Y25321 | Y | Y | + | |||
8263250-A-T | 8395209-A-T | Y27181 | Y | Y | + | |||
8402722-G-A | 8534681-G-A | Y25322 | Y | Y | + | |||
8411907-G-GA | 8543866-G-GA | + | ||||||
8418112-G-A | 8550071-G-A | SK968 | Y | Y | + | |||
8424683-C-T | 8556642-C-T | Y | Y | + | ||||
8466298-C-G | 8598257-C-G | A10089 | Y | Y | + | |||
8476770-A-C | 8608729-A-C | SK963 | Y | Y | + | |||
8521116-C-T | 8653075-C-T | Y | Y | + | ||||
8560900-C-T | 8692859-C-T | FT334551 | Y | Y | + | |||
8564133-A-G | 8696092-A-G | Y25323 | Y | Y | + | |||
8572234-G-A | 8704193-G-A | Y25324 | Y | Y | + | |||
8579983-G-A | 8711942-G-A | Y27182 | Y | Y | + | |||
8649678-G-C | 8781637-G-C | Y25325 | Y | Y | + | |||
8661201-T-C | 8793160-T-C | Y25326 | Y | + | ||||
8744822-A-T | 8876781-A-T | Y25327 | Y | Y | + | |||
8755546-C-A | 8887505-C-A | Y25328 | Y | Y | + | |||
8786783-C-T | 8918742-C-T | Y25329 | Y | Y | + | |||
8827961-C-T | 8959920-C-T | Y25330 | Y | Y | + | |||
8911759-C-T | 9043718-C-T | Y25331 | + | |||||
8979603-A-G | 9141994-A-G | Y38105 | Y | + | ||||
9078229-C-G | 9240620-C-G | Y25332 | + | |||||
9144132-C-T | 9306523-C-T | Y | + | |||||
9147070-C-G | 9309461-C-G | Y38175 | Y | + | ||||
9397455-C-T | 9559846-C-T | Y27183 | Y | Y | + | |||
9397467-A-G | 9559858-A-G | Y25333 | Y | Y | + | |||
9403200-GTACATA-G | 9565591-GTACATA-G | + | ||||||
9414178-G-C | 9576569-G-C | Y25334 | Y | + | ||||
9440062-C-T | 9602453-C-T | Y25335 | Y | Y | + | |||
9507593-C-T | 9669984-C-T | + | ||||||
9515211-G-A | 9677602-G-A | BY47554 | + | |||||
9642181-C-T | 9804572-C-T | SK972 | IR3_Prx | + | ||||
9786441-T-C | 9948832-T-C | Y25336 | Y | + | ||||
9820352-G-A | 9982743-G-A | Y27184 | Y | Y | + | |||
9825589-T-C | 9987980-T-C | Y27185 | Y | + | ||||
9896863-C-G | 10059254-C-G | Y | + | |||||
9904237-A-C | 10066628-A-C | Y27186 | Y | + | ||||
9913150-C-A | 10075541-C-A | Y27187 | Y | + | ||||
9916317-C-T | 10078708-C-T | FGC37459 | Y | + | ||||
9929043-T-C | 10091434-T-C | FT227866 | Y | + | ||||
9969162-G-A | 10131553-G-A | S12874 | Y | + | ||||
10006721-C-G | 10169112-C-G | BY46740 | Y | + | ||||
10007929-G-C | 10170320-G-C | Y | + | |||||
10029901-C-T | 10192292-C-T | Y | + | |||||
10038202-A-G | 10200593-A-G | BY45924 | + | |||||
10075233-CA-C | 10237624-CA-C | + | ||||||
13127611-A-G | 10617097-A-G | FT427657 | + | |||||
13130872-C-G | 10620358-C-G | + | ||||||
13132507-G-T | 10621993-G-T | Y25337 | + | |||||
13201224-C-A | 11045548-C-A | + | ||||||
13308780-G-A | 11153104-G-A | FT227856 | + | |||||
13493530-T-C | 11337854-T-C | + | ||||||
13584891-T-G | 11429215-T-G | + | ||||||
13603579-T-C | 11447903-T-C | + | ||||||
13621118-G-A | 11465442-G-A | FT227854 | + | |||||
13629575-AG-A | 11473899-AG-A | + | ||||||
13637682-C-A | 11482006-C-A | + | ||||||
13679239-G-C | 11523563-G-C | + | ||||||
13685560-G-T | 11529884-G-T | BY48398 | + | |||||
13710988-A-G | 11555312-A-G | BY89402 | + | |||||
13717036-G-T | 11561360-G-T | BY48414 | + | |||||
13812438-G-A | 11691732-G-A | Y25338 | + | |||||
13822272-C-T | 11701566-C-T | Y25339 | + | |||||
13832989-T-C | 11712283-T-C | Y25340 | + | |||||
13867780-T-G | 11747074-T-G | Y25341 | + | |||||
13926267-C-T | 11805561-C-T | Y25342 | Y | + | ||||
13930653-G-A | 11809947-G-A | Y27188 | Y | + | ||||
13958051-T-A | 11837345-T-A | FT20885 | Y | + | ||||
14013675-C-G | 11892969-C-G | Y | + | |||||
14050395-C-A | 11929689-C-A | Y27190 | Y | + | ||||
14084191-C-T | 11963485-C-T | FT335261 | Y | Y | + | |||
14095562-T-C | 11974856-T-C | Y27191 | Y | Y | + | |||
14103921-G-T | 11983215-G-T | Y25343 | Y | Y | + | |||
14137117-C-T | 12016411-C-T | Y25344 | Y | Y | + | |||
14212706-G-A | 12092000-G-A | Y25345 | Y | + | ||||
14246121-G-A | 12125415-G-A | Y25346 | Y | Y | + | |||
14257697-A-G | 12136991-A-G | Y | + | |||||
14259986-C-T | 12139280-C-T | Y25347 | Y | + | ||||
14267565-T-C | 12146859-T-C | Y25348 | Y | + | ||||
14272141-C-A | 12151435-C-A | Y27192 | Y | + | ||||
14282105-T-C | 12161399-T-C | Y25349 | Y | Y | + | |||
14306302-C-G | 12185596-C-G | Y25350 | Y | + | ||||
14313663-G-A | 12192957-G-A | FT335460 | Y | Y | + | |||
14327324-T-G | 12206618-T-G | Y25351 | Y | Y | + | |||
14361040-C-T | 12240335-C-T | Y25352 | Y | Y | + | |||
14369807-A-G | 12249103-A-G | Y25353 | Y | Y | + | |||
14411411-A-G | 12290708-A-G | Y27193 | Y | Y | + | |||
14442048-T-C | 12321321-T-C | Y25354 | Y | + | ||||
14448689-T-C | 12327962-T-C | Y25355 | Y | Y | + | |||
14458183-TG-T | 12337456-TG-T | + | ||||||
14473662-A-T | 12352931-A-T | F18982 | F18982 | Y | Y | + | ||
14489062-C-T | 12368331-C-T | Y25356 | Y | Y | + | |||
14512465-C-T | 12400670-C-T | Y25357 | Y | + | ||||
14602172-C-T | 12490374-C-T | Y25359 | Y | Y | + | |||
14607834-T-A | 12496036-T-A | Y27194 | Y | + | ||||
14650898-T-C | 12538963-T-C | Y25360 | Y | Y | + | |||
14659112-G-T | 12547177-G-T | Y25361 | Y | Y | + | |||
14706507-G-A | 12594573-G-A | Y25362 | Y | Y | + | |||
14717773-G-A | 12605841-G-A | Y25363 | Y | + | ||||
14727762-GCA-G | 12615830-GCA-G | + | ||||||
14803968-C-A | 12692039-C-A | Y25364 | Y | Y | + | |||
14826752-C-G | 12714819-C-G | Y25365 | Y | Y | + | |||
14840320-T-C | 12728387-T-C | Y25366 | Y | Y | + | |||
14875261-A-G | 12763331-A-G | Y25367 | Y | Y | + | |||
14916149-A-G | 12804216-A-G | Y25368 | Y | Y | + | |||
14923438-G-C | 12811503-G-C | M237 | Y | Y | + | |||
14931017-G-A | 12819082-G-A | Y25369 | Y | Y | + | |||
14984425-G-C | 12872493-G-C | Y27195 | Y | Y | + | |||
14991487-A-C | 12879572-A-C | Y25370 | Y | Y | 4×AAAC | + | ||
15013867-GA-G | 12901955-GA-G | + | ||||||
15022005-A-G | 12910094-A-G | M250 | Y | Y | + | |||
15057408-T-C | 12945500-T-C | Y25371 | Y | Y | + | |||
15062974-TC-T | 12951066-TC-T | + | ||||||
15071573-T-C | 12959664-T-C | Y25372 | Y | Y | + | |||
15071627-G-C | 12959718-G-C | Y27196 | Y | Y | + | |||
15077259-C-T | 12965349-C-T | Y25373 | Y | Y | + | |||
15099194-C-A | 12987282-C-A | Y25374 | Y | + | ||||
15126384-A-G | 13014471-A-G | Y27197 | Y | Y | + | |||
15131195-A-G | 13019282-A-G | Y27198 | Y | Y | + | |||
15137476-C-G | 13025563-C-G | Y25375 | Y | Y | + | |||
15166797-C-G | 13054883-C-G | Y25376 | Y | Y | + | |||
15168803-GC-G | 13056889-GC-G | + | ||||||
15180368-A-T | 13068454-A-T | Y25377 | Y | Y | + | |||
15229930-A-C | 13118016-A-C | Y25378 | Y | + | ||||
15234344-C-A | 13122430-C-A | Y25379 | Y | + | ||||
15262261-G-T | 13150345-G-T | FT336026 | Y | Y | + | |||
15307288-C-T | 13195390-C-T | Y25380 | Y | Y | + | |||
15339651-C-T | 13227769-C-T | Y25381 | Y | Y | + | |||
15393009-G-T | 13281129-G-T | Y25382 | Y | Y | + | |||
15423927-A-G | 13312047-A-G | Y25383 | Y | + | ||||
15424123-A-G | 13312243-A-G | Y27199 | Y | + | ||||
15428780-T-G | 13316900-T-G | Y93781 | Y | Y | + | |||
15484793-T-C | 13372913-T-C | Y25384 | Y | Y | + | |||
15514310-A-C | 13402430-A-C | Y25385 | Y | Y | + | |||
15522019-C-T | 13410139-C-T | Y27200 | Y | Y | + | |||
15574975-C-T | 13463095-C-T | Y25386 | Y | Y | + | |||
15583625-G-C | 13471745-G-C | Y27201 FGC58355 | Y | Y | + | |||
15611833-A-T | 13499953-A-T | Y25387 | Y | Y | + | |||
15658067-T-C | 13546187-T-C | Y | Y | 9×AC | + | |||
15733914-A-T | 13622034-A-T | Y27202 | Y | + | ||||
15761011-T-G | 13649131-T-G | Y27203 | Y | + | ||||
15783256-TTATC-T | 13671376-TTATC-T | + | ||||||
15802082-A-G | 13690202-A-G | Y25388 | Y | Y | + | |||
15815323-C-A | 13703443-C-A | Y | Y | + | ||||
15823542-G-A | 13711662-G-A | FT336418 | Y | Y | + | |||
15841267-G-T | 13729387-G-T | Y27204 | Y | Y | + | |||
15853520-G-A | 13741640-G-A | Y | + | |||||
15857609-C-G | 13745729-C-G | Y27205 | Y | + | ||||
15878490-T-C | 13766610-T-C | Y25389 | Y | Y | + | |||
15952753-G-A | 13840873-G-A | Y25390 | Y | Y | + | |||
15962113-T-C | 13850233-T-C | Y25391 | Y | + | ||||
15995308-T-C | 13883428-T-C | Y25392 | Y | Y | + | |||
16022386-A-G | 13910506-A-G | Y25393 | Y | + | ||||
16096263-T-C | 13984383-T-C | Y25394 | + | |||||
16096267-A-G | 13984387-A-G | Y25395 | + | |||||
16216480-C-T | 14104600-C-T | Y25396 | Y | + | ||||
16239255-C-T | 14127375-C-T | Y25397 | Y | Y | + | |||
16256093-T-C | 14144213-T-C | SK967 | Y | Y | + | |||
16275856-A-G | 14163976-A-G | FT336675 | Y | + | ||||
16320064-C-T | 14208184-C-T | Y27206 | Y | + | ||||
16396597-T-C | 14284717-T-C | Y27208 | Y | + | ||||
16428555-C-A | 14316675-C-A | Y27209 | Y | + | ||||
16472789-C-A | 14360909-C-A | SK964 | Y | Y | + | |||
16475175-A-C | 14363295-A-C | Y25398 | Y | Y | + | |||
16493027-T-A | 14381147-T-A | Y25399 | Y | Y | + | |||
16516074-T-C | 14404194-T-C | Y25400 | Y | Y | + | |||
16517649-T-C | 14405769-T-C | Y25401 | Y | Y | + | |||
16523137-A-C | 14411257-A-C | Y25402 | Y | Y | + | |||
16660182-C-T | 14548302-C-T | Y27210 | Y | Y | + | |||
16768050-T-C | 14656170-T-C | Y25404 | Y | Y | + | |||
16787377-G-T | 14675497-G-T | SK970 | Y | Y | + | |||
16818967-A-G | 14707087-A-G | Y27211 | Y | Y | + | |||
16857644-A-G | 14745764-A-G | F21139 | Y | Y | + | |||
16896194-A-G | 14784314-A-G | Y27212 | Y | Y | + | |||
16932910-C-T | 14821030-C-T | Y27213 | Y | Y | + | |||
16988613-G-T | 14876733-G-T | Y27214 | Y | Y | + | |||
17001578-T-C | 14889698-T-C | Y25405 | Y | + | ||||
17046404-G-A | 14934524-G-A | Y25406 | Y | Y | + | |||
17046831-T-A | 14934951-T-A | Y25407 | Y | Y | + | |||
17052457-A-G | 14940577-A-G | Y25408 | Y | Y | + | |||
17077619-A-C | 14965739-A-C | FT337200 | Y | Y | + | |||
17085386-C-A | 14973506-C-A | Y25409 | Y | + | ||||
17086946-A-G | 14975066-A-G | Y | Y | + | ||||
17092722-C-G | 14980842-C-G | Y25410 | Y | Y | + | |||
17110262-C-T | 14998382-C-T | Y25411 | Y | Y | + | |||
17117135-G-A | 15005255-G-A | Y25412 | Y | Y | + | |||
17120834-C-T | 15008954-C-T | BY170483 | Y | Y | + | |||
17171375-AT-A | 15059495-AT-A | + | ||||||
17223240-G-T | 15111360-G-T | Y25413 | Y | Y | + | |||
17249497-C-G | 15137617-C-G | FT337304 | Y | + | ||||
17249998-A-T | 15138118-A-T | Y27216 | Y | + | ||||
17266507-G-T | 15154627-G-T | Y25414 | Y | + | ||||
17288301-G-GAA | 15176421-G-GAA | + | ||||||
17302471-T-A | 15190591-T-A | Y27217 | Y | Y | + | |||
17305592-A-T | 15193712-A-T | FT337341 | Y | Y | + | |||
17322985-GA-G | 15211105-GA-G | + | ||||||
17410158-C-T | 15298278-C-T | Y25415 | Y | Y | + | |||
17444664-G-C | 15332784-G-C | Y25416 | Y | Y | + | |||
17508350-T-A | 15396470-T-A | Y25417 | Y | Y | + | |||
17541234-C-A | 15429354-C-A | Y25418 | Y | + | ||||
17580567-C-T | 15468687-C-T | Y25419 | Y | Y | + | |||
17590512-G-A | 15478632-G-A | FTB2411 | Y | Y | + | |||
17595793-G-C | 15483913-G-C | Y | Y | + | ||||
17613899-A-T | 15502019-A-T | Y27218 | Y | Y | + | |||
17631968-A-G | 15520088-A-G | Y25420 | Y | Y | + | |||
17645021-G-T | 15533141-G-T | F2544 AM00711 | Y | Y | + | |||
17731835-C-A | 15619955-C-A | Y25421 | Y | + | ||||
17741685-C-T | 15629805-C-T | Y25422 | Y | Y | + | |||
17775933-T-C | 15664053-T-C | Y25423 | Y | + | ||||
17806382-A-T | 15694502-A-T | Y25424 | Y | Y | + | |||
17812825-G-T | 15700945-G-T | Y38106 | Y | + | ||||
17831200-G-A | 15719320-G-A | Y27219 | Y | Y | + | |||
17898080-A-T | 15786200-A-T | Y27220 | Y | Y | + | |||
17928927-A-G | 15817047-A-G | Y25425 | Y | + | ||||
17929257-C-A | 15817377-C-A | Y25426 | Y | + | ||||
17945419-T-A | 15833539-T-A | FT337800 | Y | Y | + | |||
17947168-C-A | 15835288-C-A | Y25427 | Y | Y | + | |||
17954581-T-C | 15842701-T-C | Y38107 | Y | + | ||||
18041639-A-C | 15929759-A-C | Y25428 | Y | + | ||||
18087749-G-A | 15975869-G-A | Y27222 | Y | Y | + | |||
18102504-G-T | 15990624-G-T | Y27223 | Y | Y | + | |||
18122791-A-G | 16010911-A-G | Y27224 | Y | Y | + | |||
18159944-A-T | 16048064-A-T | Y27225 | Y | Y | + | |||
18228356-G-T | 16116476-G-T | + | ||||||
18419028-A-G | 16307148-A-G | Y25429 | P6_Gap | + | ||||
18422541-G-A | 16310661-G-A | Y25430 | P6_Gap | + | ||||
18586456-T-A | 16474576-T-A | Y25431 | Y | Y | + | |||
18589688-T-A | 16477808-T-A | BY122398 | Y | Y | + | |||
18654901-G-A | 16543021-G-A | Y25432 | Y | Y | + | |||
18761619-C-T | 16649739-C-T | Y27226 | Y | Y | + | |||
18772157-T-C | 16660277-T-C | Y25433 | Y | Y | + | |||
18800370-A-C | 16688490-A-C | Y25434 | Y | + | ||||
18801880-G-GCTAAGCAT | 16690000-G-GCTAAGCAT | + | ||||||
18823954-T-A | 16712074-T-A | Y | Y | + | ||||
18848604-T-C | 16736724-T-C | Y25435 | Y | + | ||||
18852987-C-T | 16741107-C-T | Y25436 | Y | Y | + | |||
18876502-T-C | 16764622-T-C | Y27228 | Y | + | ||||
18901035-G-A | 16789155-G-A | Y25437 | Y | Y | + | |||
18913880-T-C | 16802000-T-C | Y27229 | Y | Y | + | |||
18944820-G-A | 16832940-G-A | Y25438 | Y | Y | + | |||
18951281-T-C | 16839401-T-C | Y25439 | Y | Y | + | |||
18961742-G-A | 16849862-G-A | Y25440 | Y | Y | + | |||
18971806-A-C | 16859926-A-C | Y27230 | Y | + | ||||
18977283-A-G | 16865403-A-G | Y25441 | Y | Y | + | |||
19017284-C-T | 16905404-C-T | Y25442 | Y | + | ||||
19031106-G-T | 16919226-G-T | Y25443 | Y | + | ||||
19052954-T-C | 16941074-T-C | Y25444 | Y | Y | + | |||
19066726-G-A | 16954846-G-A | Y | Y | + | ||||
19086806-A-T | 16974926-A-T | Y27231 | Y | Y | + | |||
19090888-G-A | 16979008-G-A | Y25445 | Y | Y | + | |||
19114610-A-C | 17002730-A-C | Y25446 | Y | Y | + | |||
19161661-C-G | 17049781-C-G | Y25447 | Y | Y | + | |||
19168203-A-T | 17056323-A-T | Y25448 | Y | + | ||||
19191389-C-T | 17079509-C-T | YP5091 | Y | Y | + | |||
19261703-G-T | 17149823-G-T | Y25449 | Y | Y | + | |||
19283458-T-G | 17171578-T-G | Y27232 | Y | Y | + | |||
19283606-T-C | 17171726-T-C | Y25450 | Y | Y | + | |||
19288925-G-C | 17177045-G-C | Y25451 | Y | Y | + | |||
19299810-C-T | 17187930-C-T | Y25452 | Y | + | ||||
19306986-G-T | 17195106-G-T | Y | Y | + | ||||
19317420-G-A | 17205540-G-A | Y75114 | Y | Y | + | |||
19319498-G-A | 17207618-G-A | Y25453 | Y | Y | + | |||
19329702-C-G | 17217822-C-G | Y25454 | Y | + | ||||
19339906-C-T | 17228026-C-T | Y25455 | Y | Y | + | |||
20814548-C-G | 18652662-C-G | SK969 | P4_Gap | + | ||||
21190047-G-C | 19028161-G-C | Y25456 | Y | Y | + | |||
21388148-A-G | 19226262-A-G | Y27234 | Y | Y | + | |||
21408057-A-G | 19246171-A-G | Y25457 | Y | Y | + | |||
21410458-G-C | 19248572-G-C | Y25458 | Y | Y | + | |||
21446070-G-T | 19284184-G-T | Y27235 | Y | Y | + | |||
21471914-G-A | 19310028-G-A | Y25459 | Y | Y | + | |||
21533372-C-T | 19371486-C-T | BY4541 | Y | Y | + | |||
21559475-C-G | 19397589-C-G | Y25460 | Y | Y | + | |||
21559640-AC-A | 19397754-AC-A | + | ||||||
21559840-G-A | 19397954-G-A | Y25461 | Y | Y | + | |||
21617788-AAAAG-A | 19455902-AAAAG-A | 5×AAAG | + | |||||
21640979-A-G | 19479093-A-G | Y25462 | Y | Y | + | |||
21646631-C-T | 19484745-C-T | SK965 | Y | Y | + | |||
21670968-G-C | 19509082-G-C | Y25463 | Y | + | ||||
21783346-C-G | 19621460-C-G | Y25464 | Y | Y | + | |||
21810111-G-T | 19648225-G-T | Y25465 | Y | Y | + | |||
21841224-C-T | 19679338-C-T | SK966 | Y | + | ||||
21855819-G-A | 19693933-G-A | Y25466 | Y | Y | + | |||
21862177-A-G | 19700291-A-G | Y27238 | Y | Y | + | |||
21868192-G-A | 19706306-G-A | SK961 | Y | Y | + | |||
21899310-T-C | 19737424-T-C | Y25468 | Y | Y | + | |||
21918474-T-G | 19756588-T-G | Y25469 | Y | Y | + | |||
22006548-C-A | 19844662-C-A | Y25470 | Y | Y | + | |||
22007380-A-G | 19845494-A-G | FT339552 | Y | Y | + | |||
22027755-G-A | 19865869-G-A | Y | Y | + | ||||
22047193-G-A | 19885307-G-A | Y25471 | Y | Y | + | |||
22066396-T-C | 19904510-T-C | Y25472 | Y | Y | + | |||
22073510-C-G | 19911624-C-G | Y25473 | Y | Y | + | |||
22154396-G-A | 19992510-G-A | Y | + | |||||
22162357-AC-A | 20000471-AC-A | + | ||||||
22177147-G-A | 20015261-G-A | FT339663 | Y | Y | + | |||
22195327-C-G | 20033441-C-G | Y38108 | Y | + | ||||
22210508-C-T | 20048622-C-T | Y25474 | Y | + | ||||
22220148-T-C | 20058262-T-C | DYZ19 | + | |||||
22229763-C-T | 20067877-C-T | BY47255 | DYZ19 | + | ||||
22234249-C-T | 20072363-C-T | DYZ19 | + | |||||
22270736-C-G | 20108850-C-G | BY46813 | DYZ19 | + | ||||
22272915-C-G | 20111029-C-G | BY46815 | DYZ19 | + | ||||
22273409-G-T | 20111523-G-T | BY48489 | DYZ19 | + | ||||
22281448-G-A | 20119562-G-A | BY47912 | DYZ19 | + | ||||
22312562-A-G | 20150676-A-G | BY46117 | DYZ19 | + | ||||
22319651-C-T | 20157765-C-T | BY47316 | DYZ19 | + | ||||
22339687-T-G | 20177801-T-G | BY188365 | DYZ19 | + | ||||
22432616-T-G | 20270730-T-G | BY49513 | DYZ19 | + | ||||
22437263-T-A | 20275377-T-A | BY48900 | DYZ19 | + | ||||
22440374-G-A | 20278488-G-A | BY47957 | DYZ19 | + | ||||
22444672-G-C | 20282786-G-C | FT456869 | DYZ19 | + | ||||
22458971-C-T | 20297085-C-T | BY47338 | DYZ19 | + | ||||
22464884-G-T | 20302998-G-T | BY48613 | DYZ19 | + | ||||
22469496-C-A | 20307610-C-A | BY46672 | DYZ19 | + | ||||
22472076-A-T | 20310190-A-T | BY46387 | DYZ19 | + | ||||
22472195-G-T | 20310309-G-T | BY192866 | DYZ19 | + | ||||
22472197-A-C | 20310311-A-C | BY192861 | DYZ19 | + | ||||
22479707-A-G | 20317821-A-G | BY188411 | DYZ19 | + | ||||
22480278-A-G | 20318392-A-G | BY46160 | DYZ19 | + | ||||
22483294-G-T | 20321408-G-T | DYZ19 | + | |||||
22483540-T-C | 20321654-T-C | BY192862 | DYZ19 | + | ||||
22484466-T-A | 20322580-T-A | BY48949 | DYZ19 | + | ||||
22489091-T-C | 20327205-T-C | DYZ19 | + | |||||
22489126-C-A | 20327240-C-A | BY188418 | DYZ19 | + | ||||
22506215-T-G | 20344329-T-G | BY49548 | DYZ19 | + | ||||
22512229-G-A | 20350343-G-A | Y25475 | DYZ19 | + | ||||
22514935-G-C | 20353049-G-C | Y25476 | Y | + | ||||
22528291-A-AT | 20366405-A-AT | + | ||||||
22532759-T-A | 20370873-T-A | Y | + | |||||
22533850-T-G | 20371964-T-G | Y | + | |||||
22534527-C-T | 20372641-C-T | Y | + | |||||
22539719-G-A | 20377833-G-A | Y25477 | Y | + | ||||
22634169-G-A | 20472283-G-A | Y27239 | Y | + | ||||
22653156-G-A | 20491270-G-A | Y25478 | Y | Y | + | |||
22665397-G-C | 20503511-G-C | Y25479 | Y | Y | + | |||
22693720-T-G | 20531834-T-G | Y | + | |||||
22726709-A-G | 20564823-A-G | Y109580 | Y | Y | + | |||
22759415-G-A | 20597529-G-A | Y25480 | Y | Y | + | |||
22765419-G-A | 20603533-G-A | Y25481 | Y | Y | + | |||
22766742-G-T | 20604856-G-T | Y27240 | Y | Y | + | |||
22817968-G-C | 20656082-G-C | Y25482 | Y | Y | + | |||
22858868-C-A | 20696982-C-A | Y27241 | Y | Y | + | |||
23020875-A-T | 20858989-A-T | Y27243 | Y | Y | + | |||
23025782-C-G | 20863896-C-G | FT340035 | Y | Y | + | |||
23064975-G-C | 20903089-G-C | Y25483 | Y | Y | + | |||
23080118-G-A | 20918232-G-A | Y25484 | Y | Y | + | |||
23124885-C-A | 20962999-C-A | Y25485 | Y | Y | + | |||
23189259-T-A | 21027373-T-A | Y25486 | Y | + | ||||
23204998-T-C | 21043112-T-C | Y27245 | Y | + | ||||
23284603-AAAAG-A | 21122717-AAAAG-A | + | ||||||
23312287-A-C | 21150401-A-C | Y27246 | Y | Y | + | |||
23313172-C-T | 21151286-C-T | FT340264 | Y | Y | + | |||
23395948-T-C | 21234062-T-C | Y27247 | Y | Y | + | |||
23427758-C-T | 21265872-C-T | Y27248 | Y | Y | + | |||
23445170-A-G | 21283284-A-G | Y25487 | Y | Y | + | |||
23447994-A-G | 21286108-A-G | Y | + | |||||
23463284-G-A | 21301398-G-A | Y25488 | Y | Y | + | |||
23535708-T-A | 21373822-T-A | Y25489 | Y | Y | + | |||
23540517-CT-C | 21378631-CT-C | + | ||||||
23559089-C-T | 21397203-C-T | Y25490 BY50534 | Y | Y | + | |||
23560123-T-C | 21398237-T-C | Y25491 | Y | Y | + | |||
23561069-C-T | 21399183-C-T | Y25492 | Y | Y | + | |||
23600922-T-A | 21439036-T-A | Y25493 | Y | + | ||||
23653449-T-C | 21491563-T-C | BY147087 | Y | + | ||||
23756501-T-G | 21594615-T-G | Y25494 | Y | + | ||||
23788992-G-T | 21627106-G-T | Y25495 | + | |||||
23814339-C-G | 21652453-C-G | Y25496 | Y | + | ||||
23825378-T-C | 21663492-T-C | Y | + | |||||
23862202-G-A | 21700316-G-A | BY48050 | Y | + | ||||
23867444-G-A | 21705558-G-A | BY48051 | Y | + | ||||
23887578-A-C | 21725692-A-C | Y | + | |||||
23892308-T-C | 21730422-T-C | Y | + | |||||
23981656-G-T | 21835509-G-T | Y27249 | Y | + | ||||
23983288-T-C | 21837141-T-C | Y25497 | Y | + | ||||
24451557-G-T | 22305410-G-T | Y25498 | Y | + | ||||
25305436-A-G | 23159289-A-G | P2_r1 | + | |||||
27576114-G-T | 25429967-G-T | P1_Y2 | + | |||||
28460497-C-T | 26314350-C-T | Y27250 | + | |||||
28478232-T-G | 26332085-T-G | Y25499 | + | |||||
28501652-G-A | 26355505-G-A | FT2322 | + | |||||
28512410-C-T | 26366263-C-T | Y25500 | + | |||||
28584958-T-C | 26438811-T-C | Y25501 | + | |||||
28590985-G-A | 26444838-G-A | Y25502 | + | |||||
28631029-CTGTTGATAGTTTCTTT-C | 26484882-CTGTTGATAGTTTCTTT-C | + | ||||||
28639214-T-G | 26493067-T-G | Y38177 | + | |||||
28751775-T-C | 26605628-T-C | Y25503 | + | |||||
28780076-G-C | 26633929-G-C | Y27251 | + | |||||
28800337-G-A | 26654190-G-A | Y27252 | + | |||||
28808405-T-A | 26662258-T-A | BY151952 | + |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.