Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > BY12171 > A8256

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
251278
BigY2
251278
26199611-A-ATG 24053464-A-ATG P1_Y1 17×TGA*
17991229-A-AAT 15879349-A-AAT P7_Prx ***A*
19795952-A-C 17684072-A-C P5_Prx ***A*
19857535-C-T 17745655-C-T P5_Prx ***A*
20632251-A-G 18470365-A-G P4_Prx ***A*
28817718-T-G 26671571-T-G A*
16122851-T-A 14010971-T-A P8_Prx ***A*
17991218-A-AAT 15879338-A-AAT P7_Prx A*
24269804-C-T 22123657-C-T P3_b1 ***A*
13687061-T-C 11531385-T-C A*
27862274-C-G 25716127-C-G P1_Y2 A*
26100143-G-C 23953996-G-C P1_Y1 ***A*
22813235-T-G 20651349-T-G BY140948 YY++
18739319-T-C 16627439-T-C BY123539 YY++
16939134-T-G 14827254-T-G BY111261 YY++
17008601-G-C 14896721-G-C BY111690 YY++
17140116-C-A 15028236-C-A BY112593 YY++
17300520-T-A 15188640-T-A BY48821 FGC80681 YY12×A++
17879338-G-T 15767458-G-T Y100496 ALK263 YY++
19208150-C-A 17096270-C-A BY127252 YY++
18947597-G-T 16835717-G-T BY125019 YY++
22592641-G-A 20430755-G-A BZ3672BY42084 Y**+
23088861-A-G 20926975-A-G BY142891 YY++
21040868-GA-G 18878982-GA-G 8×A+***
21241170-C-T 19079284-C-T BY131379 YY++
13801935-G-A 11681229-G-A BY89995 **+
22487431-G-T 20325545-G-T BY224978 DYZ19 ***+
22175722-CT-C 20013836-CT-C ++
23809489-G-A 21647603-G-A BY147867 Y++
13599935-A-T 11444259-A-T BY86634 ++
13215806-C-A 11060130-C-A BY84512 ++
8447817-C-T 8579776-C-T BY46951 YY++
7291794-C-T 7423753-C-T BY64425 YY++
7253143-G-A 7385102-G-A PH568 YY++
6383549-A-C 6515508-A-C BY60006 ++
18943495-T-A 16831615-T-A L96PF2542 YY++
13650606-G-GTGGAA 11494930-G-GTGGAA 6×TGGAA****
18083146-C-CTG 15971266-C-CTG 11×TG****
14007942-CAA-C,CA 11887236-CAA-C,CA 15×A*
22274983-G-T 20113097-G-T DYZ19 ****
14730197-AAATACT-A 12618265-AAATACT-A 8×AATACT*
7415624-T-TGATAGATAGATA 7547583-T-TGATAGATAGATA 10×GATA****
13421637-A-C 11265961-A-C **
13468019-C-A 11312343-C-A **
13504396-C-A 11348720-C-A **
13554187-C-A 11398511-C-A **
13371513-A-C 11215837-A-C **
13571772-T-C 11416096-T-C **
13571757-T-C 11416081-T-C **
13571760-A-G 11416084-A-G **
13571768-T-G 11416092-T-G **
13273051-G-C 11117375-G-C **
13571777-T-C 11416101-T-C **
13571778-T-A 11416102-T-A **
13571791-G-A 11416115-G-A **
13623400-T-A 11467724-T-A **
13332392-C-A 11176716-C-A **
11027309-T-C **
13258649-G-C 11102973-G-C **
10958007-C-A **
10835375-C-G **
10850454-C-G **
10868799-A-G **
10881810-C-A **
10900335-G-T **
10935358-A-T **
10952970-C-A **
10990072-A-C **
13255601-A-G 11099925-A-G **
11003844-C-A **
11004005-C-T **
11010973-C-A **
11021014-C-A **
13708920-G-C 11553244-G-C **
11033614-C-A **
13198908-C-A 11043232-C-A **
13708913-T-C 11553237-T-C **
11646194-A-C **
13708929-G-C 11553253-G-C **
14352283-T-C 12231578-T-C **
14512243-G-A 12400448-G-A **
14427314-T-C 12306589-T-C **
13950350-G-T 11829644-G-T **
13953282-G-C 11832576-G-C **
13963108-C-A 11842402-C-A **
13997740-A-C 11877034-A-C **
14273800-C-A 12153094-C-A FT21211 **
10821837-C-A **
14250728-G-T 12130022-G-T **
14034877-C-A 11914171-C-A **
14119294-C-A 11998588-C-A **
14100298-T-A 11979592-T-A **
14086214-C-A 11965508-C-A **
14079928-G-T 11959222-G-T **
14050478-C-A 11929772-C-A **
14512300-A-C 12400505-A-C **
13919257-AGACTTGGGC-A 11798551-AGACTTGGGC-A **
13708931-A-C 11553255-A-C **
11672824-A-G **
13708938-T-C 11553262-T-C **
13708951-A-C 11553275-A-C **
13708962-A-C 11553286-A-C **
14076029-G-A 11955323-G-A **
11663376-G-T **
14703693-T-C 12591759-T-C **
13854692-G-A 11733986-G-A **
13910184-C-A 11789478-C-A **
13858735-G-T 11738029-G-T **
14557726-A-G 12445927-A-G **
13884389-G-T 11763683-G-T **
14526768-C-T 12414969-C-T **
13884391-A-T 11763685-A-T **
13909988-C-T 11789282-C-T **
14512354-T-A 12400559-T-A **
10826559-C-T **
10060644-T-C 10223035-T-C FT38047 **
10821714-T-A **
7348731-G-A 7480690-G-A **
7160909-TTG-T 7292868-TTG-T **
7170660-G-A 7302619-G-A **
7231451-A-G 7363410-A-G **
7243610-C-A 7375569-C-A **
7309886-A-T 7441845-A-T **
7347597-C-A 7479556-C-A **
7360671-A-G 7492630-A-G **
7063601-C-A 7195560-C-A **
7370537-A-G 7502496-A-G **
7861815-C-A 7993774-C-A **
7894822-T-A 8026781-T-A **
7898617-T-G 8030576-T-G **
8074926-C-A 8206885-C-A **
8078547-T-C 8210506-T-C **
8321865-C-A 8453824-C-A **
7140758-C-A 7272717-C-A **
7044298-C-A 7176257-C-A **
8692534-T-C 8824493-T-C **
6646629-A-G 6778588-A-G **
6232076-G-C 6364035-G-C IR3_Dst **
6341634-C-A 6473593-C-A **
6366350-C-A 6498309-C-A **
6478180-C-A 6610139-C-A **
6516227-T-G 6648186-T-G **
6616486-A-T 6748445-A-T **
6616529-T-C 6748488-T-C **
6648257-A-T 6780216-A-T **
7042836-A-G 7174795-A-G **
6666226-C-A 6798185-C-A **
6720914-G-T 6852873-G-T **
6720970-G-A 6852929-G-A **
6756600-C-A 6888559-C-A **
6770121-C-A 6902080-C-A **
6830372-C-A 6962331-C-A **
6903466-C-A 7035425-C-A **
8379722-C-A 8511681-C-A **
8712901-A-T 8844860-A-T **
10802927-G-A **
10783271-C-A **
10684731-C-T **
10688130-G-T **
10761834-C-T **
10762006-T-C **
10768673-C-A **
10775596-C-A **
10783777-T-G **
10669402-T-A **
10783821-C-G **
10785396-C-A **
10789243-T-C **
10792978-TGCATC-T **
10798165-T-C **
10799800-C-A **
10801741-C-CCACTA **
10682451-G-A **
10668867-C-A **
8855487-G-T 8987446-G-T **
9499254-A-G 9661645-A-G **
8913862-T-A 9045821-T-A **
9015563-G-T 9177954-G-T **
9153533-A-G 9315924-A-G **
9171582-GA-G 9333973-GA-G **
9221699-A-ATATATG 9384090-A-ATATATG **
9353231-T-C 9515622-T-C **
9444729-C-A 9607120-C-A **
9509369-C-A 9671760-C-A **
14712321-A-C 12600388-A-C **
9638462-G-T 9800853-G-T IR3_Prx **
9799546-C-A 9961937-C-A **
9928207-C-T 10090598-C-T **
9991061-C-A 10153452-C-A **
10011388-A-C 10173779-A-C **
10025366-A-G 10187757-A-G **
10032420-C-A 10194811-C-A **
14703698-T-C 12591764-T-C **
16044661-C-G 13932781-C-G **
15012670-G-A 12900758-G-A **
23447689-A-T 21285803-A-T **
23126458-A-T 20964572-A-T **
23199809-C-T 21037923-C-T **
23230974-A-T 21069088-A-T **
23364163-G-C 21202277-G-C **
23435937-T-C 21274051-T-C BY192195 **
23440414-C-A 21278528-C-A **
23447694-G-T 21285808-G-T **
23005647-T-C 20843761-T-C **
23447727-A-T 21285841-A-T **
23459942-C-A 21298056-C-A **
23697504-G-A 21535618-G-A **
23742290-C-A 21580404-C-A **
24407480-G-A 22261333-G-A **
24595263-G-T 22449116-G-T P3_t2 **
24759260-A-C 22613113-A-C P3_b2 **
23007751-T-C 20845865-T-C **
22994920-T-C 20833034-T-C **
25296992-A-T 23150845-A-T P2_r1 **
21863613-C-A 19701727-C-A **
21408448-GA-G 19246562-GA-G **
21574956-T-G 19413070-T-G **
21584428-T-C 19422542-T-C **
21698342-C-G 19536456-C-G **
21708560-T-C 19546674-T-C **
21796394-C-A 19634508-C-A **
21834010-C-A 19672124-C-A **
21919525-C-A 19757639-C-A **
22979523-C-A 20817637-C-A **
21959147-A-T 19797261-A-T **
22001594-A-G 19839708-A-G **
22134100-C-A 19972214-C-A **
22181861-A-T 20019975-A-T **
22211583-G-A 20049697-G-A **
22427513-C-T 20265627-C-T DYZ19 **
22882125-G-C 20720239-G-C **
24876807-C-A 22730660-C-A g1 **
26075041-G-T 23928894-G-T P1_Y1 **
21297444-A-T 19135558-A-T **
28720188-G-A 26574041-G-A **
28700621-C-A 26554474-C-A **
28700657-A-G 26554510-A-G **
28700688-T-G 26554541-T-G **
28701187-C-T 26555040-C-T **
28704237-C-A 26558090-C-A **
28707716-C-A 26561569-C-A **
28724104-GACACAGTATTA-G 26577957-GACACAGTATTA-G **
28643732-C-A 26497585-C-A **
28725727-A-G 26579580-A-G **
28774569-C-A 26628422-C-A **
28777568-A-G 26631421-A-G **
56825441-C-T **
56839415-A-T **
56842973-C-A **
14443-G-T **
28678830-T-C 26532683-T-C **
28625012-C-A 26478865-C-A **
26355488-C-T 24209341-C-T P1_Y1 **
28070100-C-T 25923953-C-T P1_Y2 **
26699121-G-A 24552974-G-A P1_g2 **
26928329-A-T 24782182-A-T P1_r3 **
27423408-C-G 25277261-C-G P1_g3 **
27606912-A-G 25460765-A-G P1_Y2 **
27872479-G-GAA 25726332-G-GAA P1_Y2 10×A**
27914838-T-G 25768691-T-G P1_Y2 **
27916451-C-A 25770304-C-A P1_Y2 **
28070126-C-T 25923979-C-T P1_Y2 **
28582237-A-T 26436090-A-T **
28157632-A-G 26011485-A-G P1_b4 **
28496110-C-A 26349963-C-A **
28513691-C-A 26367544-C-A **
28532871-C-A 26386724-C-A **
28559850-C-A 26413703-C-A **
28560096-C-A 26413949-C-A **
28568059-G-A 26421912-G-A **
21325495-C-A 19163609-C-A **
21109856-G-A 18947970-G-A **
15044416-T-C 12932506-T-C **
16422082-G-A 14310202-G-A **
16161026-T-A 14049146-T-A P8_Dst **
16180996-C-T 14069116-C-T **
16181190-G-A 14069310-G-A **
16278982-C-A 14167102-C-A **
16336214-T-C 14224334-T-C **
16351813-A-C 14239933-A-C **
16429851-G-T 14317971-G-T **
16050270-G-C 13938390-G-C **
16471238-C-G 14359358-C-G **
16490419-G-C 14378539-G-C **
16490461-A-G 14378581-A-G **
16490484-A-C 14378604-A-C **
16540817-C-G 14428937-C-G **
16620478-C-A 14508598-C-A **
16653320-A-T 14541440-A-T **
16064022-C-A 13952142-C-A **
6213663-A-C 6345622-A-C IR3_Dst **
16828985-C-G 14717105-C-G **
15334750-T-G 13222868-T-G **
15070569-A-G 12958660-A-G **
15115341-G-A 13003428-G-A **
15131889-C-A 13019976-C-A **
15168243-G-A 13056329-G-A **
15179858-G-T 13067944-G-T **
15221044-G-A 13109130-G-A **
15286508-G-A 13174607-G-A **
15368587-A-T 13256707-A-T **
16020882-T-C 13909002-T-C **
15495194-T-G 13383314-T-G **
15619191-A-C 13507311-A-C **
15647737-C-A 13535857-C-A **
15741716-T-C 13629836-T-C **
15761517-A-G 13649637-A-G **
15928730-C-G 13816850-C-G **
16001396-C-A 13889516-C-A **
16700530-C-A 14588650-C-A **
16829011-C-T 14717131-C-T **
21042384-C-G 18880498-C-G **
19552103-G-T 17440223-G-T **
18318935-C-T 16207055-C-T P6_Prx **
18577770-C-A 16465890-C-A **
18653207-C-T 16541327-C-T **
18793977-C-A 16682097-C-A **
18819386-G-C 16707506-G-C **
19253077-A-G 17141197-A-G **
19393098-C-A 17281218-C-A 30×T**
19552139-A-C 17440259-A-C **
18281899-T-A 16170019-T-A P6_Prx **
19740948-C-A 17629068-C-A P5_Prx **
19853700-G-C 17741820-G-C P5_Prx **
20216548-G-A 18054662-G-A P5_Dst **
20334773-G-C 18172887-G-C P5_Dst **
20655054-G-A 18493168-G-A P4_Prx **
20768005-G-T 18606119-G-T P4_Prx **
20801740-C-A 18639854-C-A P4_Prx **
18290889-T-G 16179009-T-G P6_Prx **
18231414-T-A 16119534-T-A **
17122382-C-A 15010502-C-A **
17428488-C-A 15316608-C-A **
17165278-C-A 15053398-C-A **
17254796-C-A 15142916-C-A **
17318104-C-A 15206224-C-A **
17377704-G-C 15265824-G-C **
17377714-C-A 15265834-C-A **
17377744-G-T 15265864-G-T **
17377795-T-C 15265915-T-C **
17492082-T-C 15380202-T-C **
18119789-T-C 16007909-T-C **
17666685-C-A 15554805-C-A **
17823197-G-T 15711317-G-T **
17859159-C-A 15747279-C-A **
17997505-C-A 15885625-C-A FGC65917 P7_Gap **
18011007-T-TA 15899127-T-TA P7_Dst **
18035794-C-G 15923914-C-G **
18035836-C-T 15923956-C-T **
6215983-G-T 6347942-G-T IR3_Dst **
5450150-A-C 5582109-A-C **
5990190-T-A 6122149-T-A **
3148614-C-A 3280573-C-A **
23952531-C-A 21806384-C-A **
5186456-G-T 5318415-G-T **
10032363-C-A 10194754-C-A **
10685672-A-C **
21596985-C-A 19435099-C-A **
17006519-C-A 14894639-C-A **
17313486-C-A 15201606-C-A **
28734318-C-A 26588171-C-A **
28520551-C-A 26374404-C-A **
15542067-C-A 13430187-C-A **
10792961-G-A **
56843965-G-T **
4240273-C-A 4372232-C-A **
18891025-C-A 16779145-C-A **
10899598-T-C **
10997112-CTCCATTCCATTCCATTCCATTCCATTCCAT-C **
10795003-G-T **
10801714-T-C **
4687957-C-A 4819916-C-A **
10792969-G-T **
9201282-C-T 9363673-C-T **
7235105-C-G 7367064-C-G **
17058680-A-G 14946800-A-G **
14020055-C-A 11899349-C-A **
13880896-C-A 11760190-C-A **
27762782-C-CAT 25616635-C-CAT P1_Y2 **
7239521-C-A 7371480-C-A **
11027285-C-G **
15777003-C-A 13665123-C-A **
11027298-C-T **
10799448-C-A **
19299456-C-A 17187576-C-A **
4433992-C-A 4565951-C-A **
11033643-C-A **
17374476-G-T 15262596-G-T **
10800551-A-G FGC19863FT48516 **
19059780-A-G 16947900-A-G **
10914908-C-A **
10964359-C-A **
10851775-G-T **
11031569-ACCATTCCATT-A **
19412835-C-A 17300955-C-A **
4460736-C-A 4592695-C-A **
17486109-C-A 15374229-C-A **
10801024-C-A **
5171388-C-A 5303347-C-A **
2684682-C-A 2816641-C-A **
20747300-T-A 18585414-T-A P4_Prx **
5968585-C-T 6100544-C-T **
13934199-C-A 11813493-C-A **
17928102-GT-G 15816222-GT-G 9×T**
9438092-C-A 9600483-C-A **
7590722-G-T 7722681-G-T **
10805766-G-T **
13728707-A-G 11573031-A-G **
6682244-C-A 6814203-C-A **
56861651-C-T **
4144011-C-A 4275970-C-A **
23013782-TC-T 20851896-TC-T **
8181213-TG-T 8313172-TG-T **
6648180-C-A 6780139-C-A **
18956121-C-A 16844241-C-A **
10653669-C-A **
10660408-C-A **
23833030-C-A 21671144-C-A **
24353306-C-A 22207159-C-A P3_t1 **
11025413-C-A **
28544263-C-A 26398116-C-A **
10980571-T-A **
10980584-T-C **
10980579-C-T **
10980578-T-A **
10980596-A-C **
10980594-C-A **
13166920-A-T **
10677676-C-A **
11660025-T-C BY89904 **
20560290-G-T 18398404-G-T P5_Dst **
17946944-G-TT 15835064-G-TT **
10887895-T-C **
10887879-C-A **
14660645-C-A 12548710-C-A **
10980574-G-C **
21409447-G-A 19247561-G-A **
10980603-AGTGCC-A **
15491909-ATGTG-A 13380029-ATGTG-A 16×TG**
23181437-G-C 21019551-G-C **
16868746-CAT-C 14756866-CAT-C 22×AT**
20815408-CATAT-C 18653522-CATAT-C P4_Gap 22×AT**
16044457-C-A 13932577-C-A **
28538051-G-C 26391904-G-C ****
22425896-C-T 20264010-C-T DYZ19 *****
59012826-A-C 56866679-A-C **
58990603-G-T 56844456-G-T F14124 **
15179766-T-A 13067852-T-A M11289 **
7108366-T-G 7240325-T-G M5060 PF1515 CTS958 ****
28803660-G-A 26657513-G-A **
7381611-C-A 7513570-C-A A15874 ****
58968289-G-GTT 56822142-G-GTT 8×T**
10980599-T-C **
10980612-C-G **
2773736-G-T 2905695-G-T **
4389402-GC-G 4521361-GC-G **
22211936-C-A 20050050-C-A **
28468691-C-A 26322544-C-A **
10686747-G-T **
10842549-C-G **
56846288-G-T **
15622615-A-G 13510735-A-G **
4540115-C-A 4672074-C-A **
22520781-T-C 20358895-T-C **
6454668-C-A 6586627-C-A **
5318409-C-A 5450368-C-A **
13298690-C-A 11143014-C-A **
5937661-CCACA-C 6069620-CCACA-C 15×CA**
10997112-C-A **
11671084-A-G **
10625791-C-A **
9507982-CTT-C 9670373-CTT-C 34×T**
25995464-GTATATA-G 23849317-GTATATA-G P1_Y1 10×TA**
14421959-C-A 12301234-C-A **
22219067-T-C 20057181-T-C DYZ19 **
18926872-CAAAA-C 16814992-CAAAA-C 17×A**
13847038-C-A 11726332-C-A **
10943466-C-A **
5336342-G-T 5468301-G-T **
22854791-G-T 20692905-G-T **
10958485-G-T **
20690179-T-TC 18528293-T-TC P4_Prx **
28645316-C-A 26499169-C-A **
22446902-C-T 20285016-C-T BY45585 DYZ19 **
14047270-C-A 11926564-C-A **
21464536-CAAAAA-C 19302650-CAAAAA-C 19×A**
10801671-C-G **
4240746-C-A 4372705-C-A **
30212-G-C **
11027292-A-G **
4387889-C-A 4519848-C-A **
4270553-C-A 4402512-C-A **
4285192-T-C 4417151-T-C **
4295017-G-T 4426976-G-T **
4295090-G-T 4427049-G-T **
4302242-T-C 4434201-T-C **
4357867-C-A 4489826-C-A **
4419498-A-G 4551457-A-G **
4177500-C-G 4309459-C-G **
4433166-C-A 4565125-C-A **
4473511-T-C 4605470-T-C **
4534213-T-C 4666172-T-C **
4539711-T-C 4671670-T-C **
4616153-G-A 4748112-G-A **
4665030-C-A 4796989-C-A **
4222642-C-A 4354601-C-A **
4094020-G-A 4225979-G-A **
4756575-A-C 4888534-A-C **
3834172-A-G 3966131-A-G **
3605977-G-A 3737936-G-A **
3620617-A-G 3752576-A-G **
3641413-G-C 3773372-G-C **
3771644-C-A 3903603-C-A **
3771852-C-A 3903811-C-A **
3790878-GTATATATATATATA-G 3922837-GTATATATATATATA-G 21×TA**
3835398-T-C 3967357-T-C **
4087673-C-T 4219632-C-T **
3853375-C-A 3985334-C-A **
3854295-A-G 3986254-A-G **
3854314-T-C 3986273-T-C **
3942848-C-G 4074807-C-G **
27263259-G-T 25117112-G-T P1_g3 **
4004065-G-T 4136024-G-T **
4701291-A-G 4833250-A-G **
4865909-C-A 4997868-C-A **
3559598-C-A 3691557-C-A **
5621382-T-C 5753341-T-C **
5471745-C-G 5603704-C-G **
5471873-A-G 5603832-A-G **
5472175-C-A 5604134-C-A **
5534807-T-A 5666766-T-A **
5620534-C-A 5752493-C-A **
5621355-T-C 5753314-T-C **
5621482-A-C 5753441-A-C **
5345157-G-A 5477116-G-A **
5664397-G-T 5796356-G-T **
5670002-T-C 5801961-T-C **
5689941-T-C 5821900-T-C **
5754602-T-C 5886561-T-C **
5791401-G-T 5923360-G-T **
5817881-C-A 5949840-C-A **
5411924-G-A 5543883-G-A **
5318563-A-G 5450522-A-G **
4874220-C-G 5006179-C-G **
5061267-T-C 5193226-T-C **
4960151-C-A 5092110-C-A **
4960256-A-G 5092215-A-G **
4967931-G-A 5099890-G-A **
4968155-C-A 5100114-C-A **
5035606-G-A 5167565-G-A **
5035642-A-C 5167601-A-C **
5180447-G-A 5312406-G-A **
5318388-A-T 5450347-A-T **
5189241-G-A 5321200-G-A **
5200360-G-A 5332319-G-A **
5219598-C-A 5351557-C-A **
5247720-C-A 5379679-C-A **
5250083-A-G 5382042-A-G **
5313601-C-T 5445560-C-T **
3605975-T-A 3737934-T-A **
3942883-C-A 4074842-C-A **
3548790-T-C 3680749-T-C **
9057525-C-A **
11645661-T-G **
16090960-C-A 13979080-C-A **
11674987-G-A **
10992898-G-T **
21324200-G-T 19162314-G-T **
10801729-T-TGCCAC **
5710498-C-A 5842457-C-A **
3093052-A-G 3225011-A-G **
10957989-C-A **
10651455-C-A **
28506695-C-A 26360548-C-A **
17211460-C-A 15099580-C-A **
7436389-C-A 7568348-C-A **
14195979-C-A 12075273-C-A 28×A**
6010402-C-A 6142361-C-A **
7148381-C-A 7280340-C-A **
13571790-T-C 11416114-T-C **
16002210-C-A 13890330-C-A **
14446799-C-A 12326072-C-A **
13855183-A-G 11734477-A-G **
17377773-G-T 15265893-G-T **
28760085-C-A 26613938-C-A **
10971828-C-A **
18403124-C-A 16291244-C-A P6_Gap **
10800655-G-T **
7248377-C-A 7380336-C-A **
28521727-G-T 26375580-G-T **
15070502-C-A 12958593-C-A **
10814525-C-A **
3179292-A-G 3311251-A-G **
3991782-C-A 4123741-C-A **
5682142-T-A 5814101-T-A **
14564096-C-A 12452296-C-A **
10653010-C-A **
3122388-C-A 3254347-C-A **
2859039-C-A 2990998-C-A **
3374242-A-G 3506201-A-G **
2788620-C-A 2920579-C-A **
3374247-G-C 3506206-G-C **
3131789-T-C 3263748-T-C **
3389518-C-A 3521477-C-A **
21042165-C-A 18880279-C-A **
3146562-C-A 3278521-C-A **
10777890-C-A **
6776236-C-A 6908195-C-A **
5817945-C-A 5949904-C-A **
2865841-GC-G 2997800-GC-G **
3179702-G-T 3311661-G-T **
3389650-T-C 3521609-T-C **
3341501-A-T 3473460-A-T **
10924314-C-A **
3446130-G-T 3578089-G-T **
10838997-C-A **
10876590-C-A **
3374240-T-G 3506199-T-G **
22251690-G-T 20089804-G-T DYZ19 ***
19965025-G-C 17853145-G-C P5_Prx ***
22306578-G-T 20144692-G-T DYZ19 ***
18379934-C-T 16268054-C-T P6_Prx ***
22362869-G-T 20200983-G-T DYZ19 ***
19754973-C-A 17643093-C-A P5_Prx ***
20049473-A-G 17937593-A-G P5_Prx ***
13488626-TT-C,TC 11332950-TT-C,TC ***
13488353-A-T 11332677-A-T ******
14195817-CAA-C,CA 12075111-CAA-C,CA 14×A***
24096150-A-G 21950003-A-G P3_b1 ***
16408114-C-CCA 14296234-C-CCA 19×CA***
9988064-T-C 10150455-T-C ***
16666066-A-T 14554186-A-T ***
10012475-A-C 10174866-A-C ***
2960080-G-A 3092039-G-A ***
9932029-G-A 10094420-G-A ***
10799684-C-A ***
22288774-T-G 20126888-T-G DYZ19 ***
19899586-AAAGG-A 17787706-AAAGG-A P5_Prx 8×AAGG***
22341471-TG-T 20179585-TG-T DYZ19 ***
24091210-C-A 21945063-C-A P3_b1 ***
58975043-TTCGAA-T 56828896-TTCGAA-T ***
24782534-T-C 22636387-T-C P3_b2 ***
56830301-TCCATTCCATG-T,TCCATTCCATA ***
56828910-A-G ***
4412410-C-A 4544369-C-A ***
10945350-A-C ***
56828884-C-TGTTCAAATCT ***
56828895-T-G ***
8481967-TAAA-T,TAAAA 8613926-TAAA-T,TAAAA 15×A***
16057011-C-A 13945131-C-A ***
22428922-C-A 20267036-C-A DYZ19 ***
20865387-C-A 18703501-C-A P4_Dst ***
10845608-C-T ***
56828396-TTCCAG-T ***
10746938-T-G ***
25705949-A-G 23559802-A-G P1_b3 ***
56844394-G-T ***
23476043-G-GT 21314157-G-GT 9×T***
16623778-G-T 14511898-G-T ***
13488600-G-A,T 11332924-G-A,T ***
56849508-C-T ***
13488649-GT-A,AT 11332973-GT-A,AT ***
3151852-G-T 3283811-G-T ***
56826862-AATTCCATTCCATTCG-A ***
14473752-AG-A,G 12353021-AG-A,G ***
17781483-T-TTTTTATTTTATTTTA 15669603-T-TTTTTATTTTATTTTA 16×TTTTA***
26899424-AACTACTACTACT-A 24753277-AACTACTACTACT-A P1_r3 11×ACT***
26921861-G-A 24775714-G-A P1_r3 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2512781113676081488638249825
Kit: 2512781035253983762088207991
Used in age calculations1113676083762088249825
Counts of SNPs1616
Variant counts last updated 2019-08-26 23:03:00.



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