Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > FGC11134 > A353 > Z16250 > A114 > CTS4466/S1136 > S1115 > A541 > Z21065

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
364427
BigY2
364427
28817939-G-T 26671792-G-T A*
13448060-C-G 11292384-C-G A*
28815334-G-T 26669187-G-T A*
19887274-A-ATG 17775394-A-ATG P5_Prx A*
19817279-C-T 17705399-C-T P5_Prx ***A*
20761651-C-T 18599765-C-T P4_Prx ***A*
22289892-T-A 20128006-T-A DYZ19 ***A*
28815329-T-G 26669182-T-G 4×AATGGA*
6113872-A-C 6245831-A-C A*
17101942-C-T 14990062-C-T A9429 FGC40180 YY++
24879489-T-A 22733342-T-A A9449 g1 ++
9850024-G-T 10012415-G-T FGC40175 A9425 A15266 YY++
15952590-TTTTG-T 13840710-TTTTG-T 6×TTTG++
13679231-A-G 11523555-A-G A9448 FGC40177 ++
14408817-G-C 12288115-G-C FGC40178 A9426 YY++
14801392-A-T 12689463-A-T A9427 YY++
15095712-T-C 12983800-T-C A9428 FGC40179 YY++
15144186-C-T 13032273-C-T A9450 YY++
24440969-A-T 22294822-A-T A9431 FGC40183 Y++
22441809-C-T 20279923-C-T DYZ19 +
22468937-C-G 20307051-C-G A9430 FGC40182 DYZ19 ++
22468052-T-A 20306166-T-A DYZ19 **+
8400216-A-T 8532175-A-T A9424 FGC40176 YY++
22441821-G-C 20279935-G-C DYZ19 +
22562563-CAAAT-C 20400677-CAAAT-C 9×AAAT++
22236142-C-T 20074256-C-T DYZ19 ****
22300482-T-A 20138596-T-A DYZ19 ****
22422291-G-T 20260405-G-T DYZ19 ****
5935615-AT-A 6067574-AT-A 12×T*
22241360-T-G 20079474-T-G DYZ19 ****
23195368-T-TTG 21033482-T-TTG 14×TG****
23274482-A-AAGAG 21112596-A-AAGAG 13×AG****
15045584-T-G 12933674-T-G **
14355440-T-G 12234735-T-G **
14520774-A-C 12408975-A-C **
16119921-C-A 14008041-C-A P8_Prx **
16176509-G-A 14064629-G-A **
14470682-G-A 12349951-G-A A11218 **
14461351-T-A 12340624-T-A **
14458403-A-T 12337676-A-T **
14458388-T-C 12337661-T-C **
14446656-C-A 12325929-C-A **
14443112-C-A 12322385-C-A **
14390100-A-G 12269396-A-G **
14369135-C-A 12248431-C-A **
14355436-T-G 12234731-T-G **
16050214-C-A 13938334-C-A **
14300646-G-A 12179940-G-A **
14300644-C-A 12179938-C-A **
14220992-C-G 12100286-C-G **
14219741-G-A 12099035-G-A **
14184347-C-A 12063641-C-A **
14108821-C-A 11988115-C-A **
14067129-A-G 11946423-A-G **
14042715-C-A 11922009-C-A **
14029542-C-A 11908836-C-A BY92446 **
13997741-C-A 11877035-C-A **
13939161-C-T 11818455-C-T **
13925571-G-T 11804865-G-T **
14544199-G-T 12432400-G-T **
14557939-G-T 12446140-G-T **
16003181-C-A 13891301-C-A **
13860871-A-T 11740165-A-T **
14931858-C-A 12819923-C-A **
14871451-C-G 12759521-C-G **
15193495-C-T 13081581-C-T **
15210815-C-A 13098901-C-A **
15218673-C-A 13106759-C-A **
15231118-C-T 13119204-C-T **
15369085-C-A 13257205-C-A **
15449962-C-A 13338082-C-A **
15581134-T-C 13469254-T-C **
15581143-A-G 13469263-A-G **
15581145-G-A 13469265-G-A **
15581148-G-A 13469268-G-A **
14849029-C-A 12737095-C-A **
14988800-C-A 12876866-C-A **
15626648-G-T 13514768-G-T **
15643118-T-C 13531238-T-C **
14836437-C-A 12724504-C-A **
14786405-C-A 12674475-C-A **
15734104-C-A 13622224-C-A **
14743693-C-A 12631762-C-A **
14740700-T-C 12628768-T-C **
14686070-T-C 12574136-T-C **
15785886-C-A 13674006-C-A **
15921829-A-G 13809949-A-G **
14627208-C-A 12515276-C-A **
14558491-C-A 12446692-C-A **
13872820-T-C 11752114-T-C **
13504673-C-T 11348997-C-T **
13860085-GA-G 11739379-GA-G **
10888034-T-A **
11001899-A-ATTCCT **
10997175-C-T **
10986853-A-T **
10971135-C-G **
10968219-C-A **
10965145-C-A **
10964261-C-A **
10949887-C-A **
10934748-T-G **
10929460-T-G **
10923992-C-T **
10916198-T-A **
10888029-T-G **
11009055-AT-A **
10888010-T-G **
10887998-A-T **
10887990-T-A **
10886130-C-T **
10876135-C-A **
10868830-C-A **
10842549-C-G **
10842545-C-A **
10842535-C-A **
10842474-C-A **
10836611-T-C **
10836606-T-C **
10828962-C-A **
11009052-T-TG **
11014302-C-A **
13856523-G-A 11735817-G-A **
16424563-A-G 14312683-A-G **
13804245-C-A 11683539-C-A **
13804215-C-A 11683509-C-A **
11677279-A-T **
11658972-C-T **
11656263-C-A **
11652881-A-G **
11643760-A-C **
13594308-C-A 11438632-C-A **
13585420-A-G 11429744-A-G **
13585278-C-A 11429602-C-A **
13504675-C-T 11348999-C-T FGC53043 **
13504674-A-G 11348998-A-G **
13502045-G-T 11346369-G-T **
11031382-A-G **
13488303-C-A 11332627-C-A BY86199 **
13479680-C-A 11324004-C-A **
13476853-C-G 11321177-C-G **
13468870-C-A 11313194-C-A **
13468280-C-A 11312604-C-A **
13462038-G-C 11306362-G-C **
13462028-G-T 11306352-G-T **
13336043-T-C 11180367-T-C **
13321599-C-T 11165923-C-T **
13305233-G-T 11149557-G-T **
13255040-C-A 11099364-C-A **
13226659-A-G 11070983-A-G **
13213288-C-A 11057612-C-A **
16336888-G-A 14225008-G-A **
17381405-A-G 15269525-A-G **
16629335-CAAAAA-C 14517455-CAAAAA-C 19×A**
21402217-C-CTT 19240331-C-CTT **
22154351-A-G 19992465-A-G A11222 **
22133959-A-T 19972073-A-T **
22100938-G-T 19939052-G-T **
22097153-G-C 19935267-G-C **
22078046-T-A 19916160-T-A **
22008504-A-G 19846618-A-G **
21737889-T-A 19576003-T-A **
21677615-A-T 19515729-A-T **
21587327-C-A 19425441-C-A A11221 **
21513917-T-C 19352031-T-C **
21488698-A-G 19326812-A-G **
21408342-A-G 19246456-A-G **
21295234-C-T 19133348-C-T 17×T**
22441827-C-A 20279941-C-A DYZ19 **
21285487-A-G 19123601-A-G **
21200281-TA-T 19038395-TA-T **
21152499-G-A 18990613-G-A **
21112024-G-C 18950138-G-C **
21054337-C-A 18892451-C-A Y75736 **
21033583-C-A 18871697-C-A **
20998290-G-A 18836404-G-A P4_Dst **
20840902-A-G 18679016-A-G P4_Gap **
20840832-G-A 18678946-G-A P4_Gap **
20809857-T-A 18647971-T-A P4_Gap **
20755571-C-T 18593685-C-T P4_Prx 15×T**
20707132-TA-T 18545246-TA-T P4_Prx **
22207144-A-T 20045258-A-T **
22441832-A-T 20279946-A-T DYZ19 **
20378333-T-G 18216447-T-G P5_Dst **
24582837-C-CA 22436690-C-CA P3_t2 17×A**
56837557-T-A **
28782153-C-A 26636006-C-A **
28758235-C-A 26612088-C-A **
28724220-A-C 26578073-A-C **
28570356-C-A 26424209-C-A **
28547357-A-C 26401210-A-C **
28546838-C-A 26400691-C-A **
28542456-C-A 26396309-C-A **
28505193-C-A 26359046-C-A **
28484412-A-T 26338265-A-T **
27903144-T-TC 25756997-T-TC P1_Y2 **
24931650-C-A 22785503-C-A g1 **
24416963-T-C 22270816-T-C **
22441841-T-C 20279955-T-C DYZ19 **
24406978-G-A 22260831-G-A **
23808743-A-G 21646857-A-G **
23609394-A-AT 21447508-A-AT 9×T**
23522222-C-A 21360336-C-A **
23294216-G-A 21132330-G-A **
23256371-C-A 21094485-C-A **
23252480-A-G 21090594-A-G **
23127111-C-A 20965225-C-A **
23061177-A-G 20899291-A-G **
23036901-G-T 20875015-G-T **
22833825-T-C 20671939-T-C **
22691069-G-T 20529183-G-T **
22602062-C-A 20440176-C-A **
20579351-C-CTAT 18417465-C-CTAT P5_Dst **
20378313-TA-T 18216427-TA-T P5_Dst **
16645808-T-C 14533928-T-C **
17402322-C-A 15290442-C-A **
17885143-A-G 15773263-A-G **
17876576-C-A 15764696-C-A **
17871889-A-T 15760009-A-T **
17824647-G-T 15712767-G-T **
17601201-C-A 15489321-C-A **
17580824-C-A 15468944-C-A **
17511692-C-A 15399812-C-A **
17500583-T-G 15388703-T-G **
17500532-C-T 15388652-C-T **
17491955-C-A 15380075-C-A **
17481325-C-A 15369445-C-A **
17446820-C-T 15334940-C-T **
10794013-C-T **
17997271-C-A 15885391-C-A P7_Gap **
17367558-C-A 15255678-C-A **
17346344-C-A 15234464-C-A **
17217453-C-A 15105573-C-A **
17071339-G-T 14959459-G-T **
17013042-C-A 14901162-C-A **
16952873-G-T 14840993-G-T **
16914368-A-C 14802488-A-C **
16914311-T-G 14802431-T-G **
16826581-T-A 14714701-T-A **
16823828-C-A 14711948-C-A **
16645815-C-T 14533935-C-T **
16645809-C-A 14533929-C-A **
17918644-A-C 15806764-A-C **
18155574-T-C 16043694-T-C **
19668884-T-G 17557004-T-G P5_Prx **
19055549-C-A 16943669-C-A **
19591947-AT-A 17480067-AT-A P5_Prx **
19504096-G-C 17392216-G-C FGC40181 A9432 **
19415838-C-A 17303958-C-A **
19351455-G-A 17239575-G-A **
19337678-C-A 17225798-C-A **
19304218-C-A 17192338-C-A **
19293671-G-A 17181791-G-A **
19293646-C-A 17181766-C-A **
19293631-G-A 17181751-G-A **
19272169-G-T 17160289-G-T **
19248095-C-A 17136215-C-A **
19211527-A-G 17099647-A-G **
18976548-C-A 16864668-C-A **
18188180-T-C 16076300-T-C **
18950671-C-A 16838791-C-A **
18940688-G-A 16828808-G-A **
18915170-C-A 16803290-C-A **
18901098-C-A 16789218-C-A **
18810873-C-A 16698993-C-A **
18753082-G-T 16641202-G-T A11220 **
18627790-C-G 16515910-C-G A11219 **
18520449-G-T 16408569-G-T P6_Dst **
18425262-C-A 16313382-C-A P6_Gap **
18406876-C-A 16294996-C-A P6_Gap **
18384278-T-C 16272398-T-C P6_Gap **
18381757-C-A 16269877-C-A P6_Gap **
18255957-C-T 16144077-C-T M8288 **
10801763-AT-A **
10754744-G-GCTTTC **
10789334-C-A **
5937207-CAT-C 6069166-CAT-C **
10022010-C-A 10184401-C-A **
21323515-C-A 19161629-C-A **
10969080-A-C **
19293633-G-A 17181753-G-A **
19293625-G-A 17181745-G-A **
11643732-TGG-CAC **
10754770-C-T **
10754767-T-A **
19479966-T-C 17368086-T-C **
16673131-C-A 14561251-C-A **
10670817-G-T **
23412175-C-A 21250289-C-A **
9075957-C-A 9238348-C-A **
4908263-C-A 5040222-C-A **
24373256-C-A 22227109-C-A **
10664841-C-A **
13585247-C-A 11429571-C-A **
19293637-G-A 17181757-G-A **
6757087-G-A 6889046-G-A **
13922562-C-A 11801856-C-A **
28076530-TCTTTCTTTCTTTC-T 25930383-TCTTTCTTTCTTTC-T P1_Y2 **
10744509-C-CACTTCAGTCA **
10744508-C-T **
10789335-C-G **
28724195-G-T 26578048-G-T **
10744488-C-CCTTTAT **
13480376-G-C 11324700-G-C A17122 **
16583310-G-T 14471430-G-T **
26117878-A-T 23971731-A-T P1_Y1 **
17916524-C-A 15804644-C-A **
13468188-A-T 11312512-A-T **
19293634-G-T 17181754-G-T **
19293626-C-T 17181746-C-T **
20932630-C-A 18770744-C-A P4_Dst **
7222212-C-A 7354171-C-A **
23358932-C-A 21197046-C-A **
13480452-A-T 11324776-A-T A17128 **
13480390-T-C 11324714-T-C A17124 **
14093663-C-A 11972957-C-A **
10808063-C-A **
23041137-G-T 20879251-G-T **
10937452-C-A **
2905856-TC-T 3037815-TC-T **
10658570-T-TTCCAG **
10770389-T-C **
7211265-C-A 7343224-C-A **
15657168-C-A 13545288-C-A **
19963294-C-CAT 17851414-C-CAT P5_Prx **
13480432-C-G 11324756-C-G A17127 **
13480418-T-C 11324742-T-C A17126 **
21262293-C-A 19100407-C-A **
10744492-TC-T **
7259056-C-A 7391015-C-A **
2708198-A-G 2840157-A-G **
21402217-C-T 19240331-C-T **
6858592-CTTTTTTT-C 6990551-CTTTTTTT-C 25×T**
9732938-G-A 9895329-G-A IR3_Prx **
17486352-A-G 15374472-A-G **
21846452-C-CT 19684566-C-CT 26×T**
24415718-TTATATATATA-T 22269571-TTATATATATA-T 31×TA**
5409728-T-TTTTC 5541687-T-TTTTC 18×TTTC**
22486997-C-A 20325111-C-A DYZ19 *****
13258777-A-AT 11103101-A-AT 11×T**
2810407-C-T 2942366-C-T **
7364367-G-GT 7496326-G-GT 27×T**
16590836-C-T 14478956-C-T CTS5976 M2207 **
16038232-C-A 13926352-C-A **
15391292-G-A 13279412-G-A **
16904733-T-A 14792853-T-A ZS4056 **
16475335-GT-G 14363455-GT-G **
15653421-TTTA-T 13541541-TTTA-T 8×TTA**
13504630-C-G 11348954-C-G **
5849375-G-T 5981334-G-T **
26995993-A-G 24849846-A-G P1_r4 **
18872156-T-TTTTCTTTCTTTC 16760276-T-TTTTCTTTCTTTC 16×TTTC**
58977909-T-A 56831762-T-A **
18872221-C-T 16760341-C-T **
8501689-CTCTTCT-C 8633648-CTCTTCT-C 18×TCT**
14295358-C-A 12174652-C-A **
14235943-C-A 12115237-C-A **
10837701-T-C BY83894 **
9444689-C-CA 9607080-C-CA 14×A**
24353156-T-TAA 22207009-T-TAA P3_t1 **
18615932-CTT-C 16504052-CTT-C 27×T**
10836608-G-C **
15325123-CTT-C 13213241-CTT-C 11×T**
14559174-C-A 12447375-C-A **
10754779-C-G **
4223236-C-A 4355195-C-A **
19982160-A-AT 17870280-A-AT P5_Prx **
7186659-C-A 7318618-C-A **
12450522-CTT-C **
7316615-C-A 7448574-C-A **
14458406-T-C 12337679-T-C **
10754763-T-A **
56844340-C-A **
56844339-A-C **
28722436-TAA-T 26576289-TAA-T 13×A**
10794276-C-T **
11643729-G-T **
11643722-T-A **
11643704-G-GATTCA **
21306463-C-A 19144577-C-A **
18753513-C-A 16641633-C-A **
11643753-G-C **
10687249-A-ACTCCACTCTG **
22537012-T-A 20375126-T-A **
10986874-T-C **
2730072-C-A 2862031-C-A **
7281005-C-A 7412964-C-A **
7434018-C-A 7565977-C-A **
7433621-C-A 7565580-C-A **
7418335-C-A 7550294-C-A **
7377486-A-G 7509445-A-G **
7363743-C-A 7495702-C-A **
7338167-C-A 7470126-C-A **
7316625-T-G 7448584-T-G **
7316618-G-A 7448577-G-A **
7316617-G-C 7448576-G-C **
7311932-T-C 7443891-T-C **
2980254-C-A 3112213-C-A **
7649056-C-A 7781015-C-A **
7231164-G-C 7363123-G-C **
7224113-C-A 7356072-C-A **
7214280-C-A 7346239-C-A **
7111560-G-A 7243519-G-A **
7108534-C-A 7240493-C-A **
7087897-C-A 7219856-C-A **
7045817-C-A 7177776-C-A **
6934802-G-C 7066761-G-C **
6832177-C-T 6964136-C-T **
6814624-C-T 6946583-C-T A10698 **
6814620-C-T 6946579-C-T **
7564319-C-CT 7696278-C-CT 8×T**
7864180-C-A 7996139-C-A **
6757068-A-AC 6889027-A-AC **
10031931-G-A 10194322-G-A **
10764589-C-CCATG **
10764584-C-CCCCTTGGATTGATTGAATGT **
10693781-C-A **
10691003-C-A **
10672573-C-T **
10668278-A-T **
10664829-C-A **
10664816-A-T **
10664800-C-GTGGTG **
10664786-A-G **
9943517-A-C 10105908-A-C **
7996096-A-G 8128055-A-G **
9927297-G-T 10089688-G-T **
9602739-GT-G 9765130-GT-G IR3_Prx **
9120113-AT-A **
9118070-A-T **
9111018-G-T **
8855617-C-A 8987576-C-A **
8806934-C-A 8938893-C-A **
8379225-T-C 8511184-T-C **
8345952-C-G 8477911-C-G **
8140474-G-T 8272433-G-T **
8100637-C-A 8232596-C-A 37×A**
6757085-A-G 6889044-A-G **
7269927-T-C 7401886-T-C **
56849568-G-T **
4113144-G-A 4245103-G-A **
5313537-C-A 5445496-C-A **
5309506-A-G 5441465-A-G **
5293881-T-A 5425840-T-A **
5205206-A-G 5337165-A-G **
5011258-C-A 5143217-C-A **
4873875-C-A 5005834-C-A **
4781389-T-C 4913348-T-C **
4567036-A-G 4698995-A-G **
4552742-C-T 4684701-C-T **
4447639-C-A 4579598-C-A **
4261810-C-A 4393769-C-A **
4240342-C-A 4372301-C-A **
4113133-G-A 4245092-G-A **
5627774-C-A 5759733-C-A **
4081629-C-G 4213588-C-G **
4081622-C-A 4213581-C-A **
4081612-A-G 4213571-A-G **
4049898-C-A 4181857-C-A **
3991901-G-T 4123860-G-T **
3640474-T-C 3772433-T-C **
3610258-G-A 3742217-G-A **
3602790-C-A 3734749-C-A **
3560112-C-A 3692071-C-A **
3409728-C-T 3541687-C-T **
3279564-C-A 3411523-C-A **
3111741-T-C 3243700-T-C **
5446336-T-G 5578295-T-G **
4136510-A-T 4268469-A-T **
6664040-G-T 6795999-G-T **
5828940-C-A 5960899-C-A **
6457766-A-T 6589725-A-T **
6132095-C-A 6264054-C-A **
5849317-C-A 5981276-C-A A11217 **
6357855-G-T 6489814-G-T **
6757051-A-C 6889010-A-C **
6757064-C-T 6889023-C-T **
22435777-A-T 20273891-A-T DYZ19 ***
22348528-A-T 20186642-A-T FGC68690 DYZ19 ***
22311743-A-T 20149857-A-T DYZ19 ***
22435780-T-A 20273894-T-A DYZ19 ***
17676463-TA-T,TAA 15564583-TA-T,TAA 11×A***
18753167-G-T 16641287-G-T ***
56833145-C-T ***
22435797-G-C 20273911-G-C DYZ19 ***
13489680-C-T 11334004-C-T ***
10025659-C-A 10188050-C-A ***
4862496-C-A 4994455-C-A ***
15669964-CAAAAAAA-C,CAA 13558084-CAAAAAAA-C,CAA 18×A***
22256173-G-A 20094287-G-A DYZ19 ***
10987825-A-T ***
6651298-C-A 6783257-C-A ***
16852791-C-CT 14740911-C-CT 10×T***
22435802-T-A 20273916-T-A DYZ19 ***
3467570-A-T 3599529-A-T ***
10673907-C-CTG,G ***
9877903-T-G 10040294-T-G A12120 ***
25267933-G-A 23121786-G-A P2_r1 ***
21614729-T-TA 19452843-T-TA 11×A***
14880241-ATTTT-A,ATTT 12768311-ATTTT-A,ATTT 17×T***
21318477-C-CA 19156591-C-CA 19×A***
22829644-CAAAAA-C 20667758-CAAAAA-C 18×A***
6149871-T-TAC 6281830-T-TAC IR3_Dst 17×AC***
24244600-C-T 22098453-C-T P3_b1 19×T***
58979280-T-C 56833133-T-C ***
14777087-TA-T 12665156-TA-T 11×A***
22435800-C-A 20273914-C-A DYZ19 ***
22449888-T-G 20288002-T-G DYZ19 ***
22435809-G-A 20273923-G-A DYZ19 ***
16018279-C-A 13906399-C-A ***
13462478-C-A 11306802-C-A ***
19337633-CTTTTT-C,CTTTTTT 17225753-CTTTTT-C,CTTTTTT 22×T***
11014419-C-T ***
14103206-C-T 11982500-C-T ***
17014137-C-A 14902257-C-A ***
20424825-G-A 18262939-G-A P5_Dst ***
14079493-C-A 11958787-C-A ***
10801708-A-G ***
13194067-C-A 11038391-C-A ***
5976683-GTCTC-G 6108642-GTCTC-G 11×TC***
7897429-G-T 8029388-G-T ***
19040613-C-A 16928733-C-A ***
13976083-CAAAA-C 11855377-CAAAA-C 15×A***
4049372-TAA-T 4181331-TAA-T 16×A***
13838600-T-C 11717894-T-C ***
22435814-C-T 20273928-C-T DYZ19 ***
21318167-C-A 19156281-C-A ***
8481808-CTT-C,CT 8613767-CTT-C,CT 11×T***
21438451-G-A 19276565-G-A ***
16180576-C-A 14068696-C-A ***
2651303-CAA-C,CA 2783262-CAA-C,CA 16×A***
18911127-C-A 16799247-C-A ***
7047797-AT-A 7179756-AT-A 10×T***
26267098-G-A 24120951-G-A P1_Y1 ***
25340078-T-C 23193931-T-C BY28191 P2_r1 ***
22039921-C-A 19878035-C-A ***
24226337-T-C 22080190-T-C P3_b1 ***
13656287-C-A 11500611-C-A ***
22454165-G-T 20292279-G-T DYZ19 ***
5455097-C-A 5587056-C-A ***
18145671-T-C 16033791-T-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 3644271069658577437207830945
Kit: 364427964368878809387797395
Used in age calculations1069658578809387830945
Counts of SNPs78
Variant counts last updated 2018-06-18 21:27:23.



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