Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z367/S255 > L20/S144 > Z46420 > S3856 > Y34153 > BY34011

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
24080237-A-C 21934090-A-C A13610FGC7523 P3_b1 8×T+
13671286-G-C 11515610-G-C BY87835 +
20828516-T-TG 18666630-T-TG P4_Gap +
23535788-C-A 21373902-C-A BY146030 YY8×A+
19373675-T-A 17261795-T-A YY+
7590307-G-T 7722266-G-T BY66106 YY+
21080653-C-T 18918767-C-T BY130285 YY+
13805194-T-A 11684488-T-A **
22369828-N-C 20207942-N-C DYZ19 **
15863116-G-C 13751236-G-C **
28722297-T-TA 26576150-T-TA **
7374927-C-G 7506886-C-G **
14514915-G-T 12403120-G-T L1419 **
13740609-T-A 11584933-T-A **
58876842-C-T 56714029-G-A **
17206622-G-T 15094742-G-T **
13805198-T-A 11684492-T-A **
13805186-T-C 11684480-T-C **
13805169-ATGTAT-A 11684463-ATGTAT-A **
13664810-A-C 11509134-A-C ***
13447204-A-C,T 11291528-A-C,T ***
14624250-A-T 12512448-A-T ***
13852615-TGGAAA-T 11731909-TGGAAA-T ***
9222596-C-G 9384987-C-G ***
26563876-C-CT 24417729-C-CT P1_g2 21×T***
22270575-A-G 20108689-A-G BY33360 DYZ19 ***
8125061-AG-A 8257020-AG-A ***
13662097-A-T 11506421-A-T ***
13448929-T-C 11293253-T-C ***
13453041-G-C 11297365-G-C ***
28799141-A-G 26652994-A-G ***
13842566-C-T 11721860-C-T ***
13808138-C-T 11687432-C-T ***
13680778-C-A,T 11525102-C-A,T 4×TGGAA***
28787580-A-G 26641433-A-G ***
13808053-A-T 11687347-A-T ***
13803188-GA-G 11682482-GA-G ***
19868184-C-T 17756304-C-T P5_Prx ***
58876743-CTCATT-C,T 56714123-AATGAG-A,G ***
13650568-A-G 11494892-A-G ***
58977773-T-C 56831626-T-C ***
7053326-C-T 7185285-C-T ***
13818175-A-C 11697469-A-C ***
13842119-T-A 11721413-T-A ***
13816885-T-A 11696179-T-A ***
13843410-G-A 11722704-G-A BY37577 ***
13830346-G-A 11709640-G-A ***
13457328-T-A 11301652-T-A ***
13833770-T-A 11713064-T-A ***
13833790-T-A 11713084-T-A ***
13452841-C-T 11297165-C-T ***
13865735-G-T 11745029-G-T ***
13865736-A-G 11745030-A-G ***
58974058-T-C 56827911-T-C ***
13855396-C-G 11734690-C-G ***
13680670-A-G 11524994-A-G ***
13865770-G-A 11745064-G-A ***
27810184-C-CAAAGAAAG 25664037-C-CAAAGAAAG P1_Y2 21×AAAG***
13678511-T-G 11522835-T-G ***
13851398-A-G 11730692-A-G ***
13664621-A-G 11508945-A-G ***
13828537-G-A 11707831-G-A ***
58876723-A-T 56714148-T-A ***
58876819-G-C 56714052-C-G ***
58974071-C-T 56827924-C-T ***
58974072-A-C 56827925-A-C ***
58974073-T-G 56827926-T-G ***
58974103-A-G 56827956-A-G ***
58974126-C-G 56827979-C-G ***
58974129-T-A 56827982-T-A ***
58974130-C-T 56827983-C-T ***
58974088-T-G 56827941-T-G ***
19411956-A-AAG 17300076-A-AAG ***
23675360-CGTGT-C 21513474-CGTGT-C 23×GT***
25885564-T-C 23739417-T-C P1_Y1 ***
13868153-C-T 11747447-C-T ***
14981830-TTTCCTTCC-T,TT 12869905-A-AT 16×TTCC***
18149590-GATAC-G,GATAG 16037710-GATAC-G,GATAG 10×ATAC***
20326007-CTT-C 18164121-CTT-C P5_Dst 29×T***
20629009-C-CTCCT 18467123-C-CTCCT P4_Prx 17×TCCT***
20927099-G-GTTTTTTTTT 18765213-G-GTTTTTTTTT P4_Dst 35×T***
22250158-G-T 20088272-G-T DYZ19 ***
22364035-G-T 20202149-G-T DYZ19 ***
22508168-A-T 20346282-A-T DYZ19 ***
22510199-C-G 20348313-C-G BY30214 DYZ19 ***
22814282-A-T 20652396-A-T ***
24984865-C-T 22838718-C-T g1 ***
26463097-C-CTTT 24316950-C-CTTT P1_Y1 36×T***
13853536-C-T 11732830-C-T ***
28787286-G-GTGGAA 26641139-G-GTGGAA ***
28799121-A-G 26652974-A-G ***
58876712-A-T 56714159-T-A ***
58876722-T-C 56714149-A-G ***
58912888-CATTCT-C 56677973-GGAATA-G ***
58976160-C-G 56830013-C-G ***
58979096-C-T 56832949-C-T ***
58979097-A-T 56832950-A-T ***
13545329-AAAG-A 11389653-AAAG-A ***
13817976-C-A,T 11697270-C-A,T ***
13818688-T-A,G 11697982-T-A,G ***
13857580-G-T 11736874-G-T ***
13847137-A-T 11726431-A-T ***
10031749-G-A 10194140-G-A ***
13478880-C-T 11323204-C-T BY86020 ***
22339547-T-C 20177661-T-C FGC78800 DYZ19 ***
9992193-A-G 10154584-A-G FT165082 ***
9725259-TCA-T 9887650-TCA-T IR3_Prx 10×CA***
13814884-G-A 11694178-G-A ***
26359602-A-C 24213455-A-C P1_Y1 ***
13855405-A-T 11734699-A-T ***
10021122-CTCTG-C,GTCTG 10183513-CTCTG-C,GTCTG ***
13138774-T-G 10628260-T-G ***
13452806-C-T 11297130-C-T ***
13457467-C-G 11301791-C-G ***
13457501-T-C 11301825-T-C ***
13478848-TC-T 11323172-TC-T ***
13801203-A-C 11680497-A-C ***
13846655-C-G 11725949-C-G ***
13801214-G-T 11680508-G-T ***
13804456-A-C 11683750-A-C ***
13805161-G-A 11684455-G-A ***
13805166-G-T 11684460-G-T ***
13805190-T-A 11684484-T-A ***
13805197-T-A,G 11684491-T-A,G ***
13805206-G-A 11684500-G-A ***
13808049-T-A 11687343-T-A ***
13818046-T-G 11697340-T-G ***
13818100-A-G 11697394-A-G ***
13819179-A-T 11698473-A-T BY156346 ***
13821158-G-GGAATCCACCC 11700452-G-GGAATCCACCC ***
13816872-C-T 11696166-C-T BY182942 ***
13853540-G-A 11732834-G-A ***
13453735-T-C 11298059-T-C ***
13868085-T-C 11747379-T-C ***
10008566-C-T 10170957-C-T ***
13805191-G-T 11684485-G-T ***
13851397-G-A 11730691-G-A ***
58974788-G-T 56828641-G-T ***
13680673-A-G 11524997-A-G ***
13680679-T-G 11525003-T-G ***
13680706-A-T 11525030-A-T ***
13680761-G-C 11525085-G-C ***
13680788-A-G 11525112-A-G ***
13680804-T-A 11525128-T-A ***
13804945-T-C 11684239-T-C ***
13805183-A-T 11684477-A-T ***
13850596-A-G 11729890-A-G ***
28785764-A-G 26639617-A-G ***
13680895-G-C 11525219-G-C ***
13861500-A-AT,T 11740794-A-AT,T ***
13861606-A-T 11740900-A-T ***
13861664-A-G 11740958-A-G ***
13804308-G-T 11683602-G-T ***
13680779-T-C 11525103-T-C ***
13680786-G-C 11525110-G-C ***
13680794-T-G 11525118-T-G ***
13801800-T-G 11681094-T-G ***
13820801-A-C 11700095-A-C ***
13835227-A-G 11714521-A-G ***
13855391-A-G 11734685-A-G ***
26117844-T-A 23971697-T-A P1_Y1 ***
13676703-A-G 11521027-A-G ***
17446767-C-CT 15334887-C-CT 33×T***
13663823-C-A 11508147-C-A BY87533 ***
25461433-C-CTT 23315286-C-CTT P2_r2 26×T***
13680821-G-T 11525145-G-T ***
13680849-T-A 11525173-T-A ***
13839776-G-A 11719070-G-A ***
13865752-A-G 11745046-A-G ***
13868174-T-C 11747468-T-C ***
13453534-C-T 11297858-C-T ***
13680893-A-T 11525217-A-T ***
13653022-G-A 11497346-G-A FGC7593 ***
13813511-C-G 11692805-C-G ***
13813545-T-A 11692839-T-A ***
13822129-T-A 11701423-T-A ***
13822130-T-A 11701424-T-A BY90571 ***
13838799-A-C 11718093-A-C ***
13868195-G-A 11747489-G-A ***
13835244-C-T 11714538-C-T ***
13139653-A-C,T 10629139-A-C,T ***
13141098-TG-A,G 10630584-TG-A,G ***
13680688-A-G 11525012-A-G ***
13680689-T-A 11525013-T-A ***
13686953-G-A 11531277-G-A ***
13814910-T-A 11694204-T-A ***
28787260-G-A 26641113-G-A ***
28787273-T-G 26641126-T-G ***
9351151-CATATAT-C 9513542-CATATAT-C 21×AT***
13448856-G-C,T 11293180-G-C,T ***
13680850-C-T 11525174-C-T ***
58974216-A-AATTCCTATCC,C 56828069-A-AATTCCTATCC,C ***
10008571-A-T 10170962-A-T ***
13680735-A-T 11525059-A-T ***
24118042-A-AT 21971895-A-AT P3_b1 15×T***
13662149-A-G 11506473-A-G ***
13853545-A-C 11732839-A-C ***
13679946-G-T 11524270-G-T ***
13822006-G-A 11701300-G-A ***
13855235-C-T 11734529-C-T ***
13139633-T-C 10629119-T-C ***
13680671-T-C 11524995-T-C ***
13680672-T-A 11524996-T-A 4×ATGGA***
13846177-T-A 11725471-T-A ***
13869903-G-C 11749197-G-C ***
27232111-T-C,TTTTCTTTCTTTC 25085964-T-C,TTTTCTTTCTTTC P1_g3 18×TTTC***
13804390-G-A 11683684-G-A ***
58974115-C-T 56827968-C-T ***
13664799-G-A 11509123-G-A ***
22224802-T-C 20062916-T-C DYZ19 ***
9030405-A-AAAAGAAAGG 9192796-A-AAAAGAAAGG ***
13679988-T-C 11524312-T-C ***
13855431-C-G 11734725-C-G ***
13855376-A-G 11734670-A-G ***
13855379-G-A 11734673-G-A FT20704 ***
13855381-T-G 11734675-T-G ***
13855386-T-G 11734680-T-G ***
13855387-T-G 11734681-T-G ***
13653023-A-G 11497347-A-G ***
13855445-A-T 11734739-A-T ***
26834683-G-A 24688536-G-A P1_g2 ***
13194892-T-C 11039216-T-C ***
13676560-A-G 11520884-A-G ***
13679936-C-T 11524260-C-T ***
13827057-T-A 11706351-T-A ***
13664801-T-A,G 11509125-T-A,G ***
13853542-A-T 11732836-A-T ***
19966688-AAAG-A,AA 17854808-AAAG-A,AA P5_Prx 26×AAG***
13801855-A-G 11681149-A-G ***
13805311-G-C 11684605-G-C ***
13141230-T-C 10630716-T-C ***
13846644-A-G 11725938-A-G ***
13854247-G-T 11733541-G-T ***
13452813-C-T 11297137-C-T ***
13805115-C-A,T 11684409-C-A,T ***
13808140-G-C 11687434-G-C ***
13839289-T-C 11718583-T-C ***
14478891-C-T 12358160-C-T ***
14478892-C-T 12358161-C-T ***
13474323-G-A 11318647-G-A ***
13799154-T-A 11678448-T-A ***
13835222-A-C 11714516-A-C ***
13835255-T-A,G 11714549-T-A,G ***
58974042-A-T 56827895-A-T ***
13821160-C-A 11700454-C-A ***
13489764-G-A 11334088-G-A ***
13851396-G-C 11730690-G-C ***
13861604-G-A 11740898-G-A ***
13861607-T-A 11740901-T-A ***
24861640-C-CTT 22715493-C-CTT IR1_R 27×T***
13652110-A-G 11496434-A-G ***
13805124-A-T 11684418-A-T ***
13805136-G-T 11684430-G-T ***
13805137-C-G 11684431-C-G ***
13822256-A-T 11701550-A-T ***
13822263-T-G 11701557-T-G BY90579 ***
13855451-T-G 11734745-T-G ***
13817964-A-T 11697258-A-T ***
13855429-C-A 11734723-C-A ***
27150720-AT-A 25004573-AT-A P1_g3 12×T***
13809898-G-C,T 11689192-G-C,T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 2122431056940376299717707500
Used in age calculations1056940376299717707500
Counts of SNPs44
Variant counts last updated 2022-07-19 03:15:22.

Big Tree Main Page