Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > DF21/S192 > Z30233 > FGC3903/S5201 > S5199 > Z246 > DF25 > DF5 > ZZ32 > L1403 > L1402 > A818 > A426 > A12131 > A7493 > A7495

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
184136
FTDNA
184136
BigY2
184136
10631411-C-G A*
25356286-C-A 23210139-C-A P2_r2 A****A*
4672485-A-T 4804444-A-T A*
26453052-T-G 24306905-T-G P1_Y1 A*
26299926-C-T 24153779-C-T P1_Y1 A*
20895022-C-T 18733136-C-T P4_Dst A*
59017117-G-C 56870970-G-C A*
22289288-T-C 20127402-T-C BY216324 DYZ19 +***+
19212369-T-TA 17100489-T-TA +++
8627864-C-T 8759823-C-T A7494 YY+++
22444637-G-T 20282751-G-T DYZ19 +++
22980854-C-A 20818968-C-A Y+
22478167-C-A 20316281-C-A BY223977 DYZ19 +++
3592314-A-C 3724273-A-C +
19103890-T-G 16992010-T-G Z2198 A14207 YY6×TTTG+++
3562056-C-T 3694015-C-T *
4744924-T-TA 4876883-T-TA 9×A*
4118676-C-CA 4250635-C-CA 14×A*
13993605-A-G 11872899-A-G **
14012572-G-A 11891866-G-A **
13856038-T-A 11735332-T-A **
13934297-C-A 11813591-C-A **
13919016-C-A 11798310-C-A **
14118467-G-T 11997761-G-T **
13898785-G-T 11778079-G-T **
14124067-A-C 12003361-A-C **
14160288-G-T 12039582-G-T **
14234658-A-G 12113952-A-G **
13858484-G-T 11737778-G-T **
15440013-G-A 13328133-G-A **
11669809-G-T **
11643812-T-A **
13489062-G-C 11333386-G-C **
13477988-C-A 11322312-C-A **
13477471-C-A 11321795-C-A **
13460763-G-T 11305087-G-T **
14383480-G-T 12262776-G-T **
13457743-T-TTGAA 11302067-T-TTGAA **
13361489-T-C 11205813-T-C **
13198685-C-A 11043009-C-A **
11021810-C-A **
11021656-C-A **
11017438-C-A **
11007536-GC-G **
11007536-G-A **
14267087-C-A 12146381-C-A **
14792813-TG-T 12680884-TG-T **
14513246-A-T 12401451-A-T **
15370125-C-A 13258245-C-A **
16344560-C-A 14232680-C-A **
16319422-C-T 14207542-C-T **
16244948-C-A 14133068-C-A **
16029712-T-A 13917832-T-A **
16015711-A-T 13903831-A-T **
15928606-A-G 13816726-A-G **
15832298-G-A 13720418-G-A **
15686868-A-G 13574988-A-G **
15424543-G-T 13312663-G-T **
15395165-C-A 13283285-C-A **
15391231-C-T 13279351-C-T **
15278999-C-A 13167098-C-A **
14530877-T-TAC 12419078-T-TAC 9×AC**
15232168-G-T 13120254-G-T **
15180038-G-T 13068124-G-T **
15109344-C-A 12997431-C-A **
15106814-C-A 12994901-C-A **
11007524-A-C **
14724768-G-T 12612836-G-T **
14639061-CTTCTTT-C 12527130-CTTCTTT-C **
14609665-C-T 12497867-C-T **
14609663-G-T 12497865-G-T **
14609657-G-A 12497859-G-A **
14589251-C-A 12477451-C-A **
14561699-C-T 12449900-C-T **
11007529-ATTCC-A **
10952241-A-G **
11007488-C-T **
8269849-T-C 8401808-T-C **
10645971-C-A **
10631452-C-A **
10034188-C-A 10196579-C-A **
9131338-C-A 9293729-C-A **
9117129-G-C 9279520-G-C **
9116811-G-T 9279202-G-T **
9107940-A-G **
9107939-C-T **
9107932-G-A **
8699665-G-A 8831624-G-A **
8479570-T-C 8611529-T-C **
8095642-T-C 8227601-T-C **
10658364-A-T **
7964644-C-T 8096603-C-T **
7885571-T-C 8017530-T-C **
7832222-C-A 7964181-C-A **
7713187-T-C 7845146-T-C **
7590622-C-A 7722581-C-A **
15440017-A-G 13328137-A-G **
7183961-C-A 7315920-C-A **
7183722-C-A 7315681-C-A **
7162432-C-A 7294391-C-A **
7102420-T-C 7234379-T-C **
7099978-T-C 7231937-T-C **
7091300-C-A 7223259-C-A **
10647957-A-G **
10671782-C-A **
11007474-A-G **
10865451-AAAC-A **
10987774-C-A **
10982228-C-A **
10981457-C-G **
10976060-TC-T **
10969311-A-T **
10953297-C-A **
10953286-C-A **
16357256-G-A 14245376-G-A **
10873575-C-A **
10868919-G-A **
10865458-A-G **
10865450-T-TCCC **
10672059-C-A **
10847921-C-A **
10845703-T-A **
10838376-C-A **
10835741-C-A **
10824291-G-C **
10812253-C-A **
10802263-C-A **
10801089-C-A **
10784901-C-A **
10766371-C-A **
10691530-C-G **
10673887-C-G **
16344676-C-A 14232796-C-A **
16989095-C-A 14877215-C-A **
16428401-C-A 14316521-C-A **
28567435-C-A 26421288-C-A **
56826862-A-ATTTAG **
56823387-C-A **
56822403-T-G **
56822347-T-A **
28818113-A-T 26671966-A-T **
28742499-T-TA 26596352-T-TA **
28741193-C-A 26595046-C-A **
28640460-A-G 26494313-A-G **
28636299-C-A 26490152-C-A **
28636179-A-G 26490032-A-G **
28621886-G-T 26475739-G-T **
28518764-C-A 26372617-C-A **
56828210-A-G **
26538781-T-C 24392634-T-C P1_g2 **
25934586-T-TG 23788439-T-TG P1_Y1 **
25930284-A-AG 23784137-A-AG P1_Y1 **
23997513-G-T 21851366-G-T **
23837186-G-T 21675300-G-T **
23773793-C-A 21611907-C-A **
23723669-C-A 21561783-C-A **
23516836-C-A 21354950-C-A **
23289778-T-C 21127892-T-C **
23142986-C-A 20981100-C-A **
23066318-C-A 20904432-C-A **
22884870-G-T 20722984-G-T **
56828204-A-C **
56828226-T-TTCCAC **
22602364-A-T 20440478-A-T **
6523092-T-C 6655051-T-C **
26084975-T-A 23938828-T-A P1_Y1 **
23726607-G-T 21564721-G-T **
23206594-C-T 21044708-C-T **
21795965-T-A 19634079-T-A **
15733665-T-C 13621785-T-C **
14289243-C-T 12168537-C-T **
13469386-G-T 11313710-G-T **
13269133-C-G 11113457-C-G **
9562310-AGT-A 9724701-AGT-A IR3_Prx 9×GT**
9211377-A-G 9373768-A-G **
6820080-A-G 6952039-A-G **
6182243-C-A 6314202-C-A IR3_Dst **
56828231-A-C **
6017663-C-A 6149622-C-A **
4736181-T-C 4868140-T-C **
4431555-G-A 4563514-G-A **
28421648-A-AG 26275501-A-AG P1_gr2 **
20868952-T-TA 18707066-T-TA P4_Dst 12×A**
32898-C-A **
56841457-T-A **
56841455-T-C **
56841447-G-C **
56841446-G-C **
56839879-G-C **
56828234-C-G **
22876500-C-A 20714614-C-A **
22602358-T-C 20440472-T-C **
16463493-A-G 14351613-A-G **
17622746-C-A 15510866-C-A **
18850463-T-C 16738583-T-C **
18780374-C-A 16668494-C-A **
18736281-C-A 16624401-C-A **
18577325-C-A 16465445-C-A F22684 **
18398220-T-C 16286340-T-C P6_Gap **
18283635-C-A 16171755-C-A P6_Prx **
18155806-C-A 16043926-C-A **
18079593-C-A 15967713-C-A **
18079445-A-T 15967565-A-T **
17992532-A-T 15880652-A-T P7_Prx **
17741332-C-A 15629452-C-A **
17616884-G-A 15505004-G-A **
18993351-A-G 16881471-A-G **
17543912-A-T 15432032-A-T **
17440828-G-A 15328948-G-A **
17338400-C-A 15226520-C-A **
17212283-G-A 15100403-G-A **
7053894-T-C 7185853-T-C **
16973365-C-A 14861485-C-A **
16952758-C-A 14840878-C-A **
16886082-T-A 14774202-T-A **
16847545-A-C 14735665-A-C **
16729172-G-GT 14617292-G-GT 22×T**
16645851-C-T 14533971-C-T **
16539702-C-A 14427822-C-A **
18965977-G-C 16854097-G-C 13×CCTT**
19042655-G-T 16930775-G-T **
22592244-T-A 20430358-T-A **
21211644-C-A 19049758-C-A **
22353465-A-G 20191579-A-G DYZ19 **
22353462-G-T 20191576-G-T DYZ19 **
22260675-T-C 20098789-T-C DYZ19 **
22211897-C-T 20050011-C-T **
22023225-A-C 19861339-A-C **
21958878-C-A 19796992-C-A **
21853627-C-A 19691741-C-A **
21821538-C-A 19659652-C-A **
21588427-T-C 19426541-T-C **
21462659-A-G 19300773-A-G **
21422092-A-G 19260206-A-G **
21422057-C-G 19260171-C-G **
21201681-G-A 19039795-G-A **
19099083-C-A 16987203-C-A **
21125610-C-T 18963724-C-T **
21111745-T-C 18949859-T-C **
20612181-G-T 18450295-G-T P4_Prx **
20347838-G-GTA 18185952-G-GTA P5_Dst **
20242475-C-A 18080589-C-A P5_Dst **
19938648-C-T 17826768-C-T P5_Prx **
19448473-G-T 17336593-G-T **
19429383-G-T 17317503-G-T **
19300469-C-A 17188589-C-A **
19244820-C-T 17132940-C-T **
19155131-C-A 17043251-C-A **
19102635-G-A 16990755-G-A **
7087848-C-A 7219807-C-A **
27918571-A-T 25772424-A-T P1_Y2 **
7042522-C-A 7174481-C-A FT8384 **
22602362-T-C 20440476-T-C **
10937392-T-C **
14609654-G-A 12497856-G-A **
10763112-A-T **
15785963-C-A 13674083-C-A **
28818144-G-A 26671997-G-A **
10767752-C-T **
10767713-C-T **
10767678-C-T **
10767651-TA-T **
10767646-CAGT-C **
19206720-G-A 17094840-G-A **
27570914-A-T 25424767-A-T P1_Y2 **
10673844-A-ACTT **
10658352-C-G **
10658334-A-T **
7257190-C-A 7389149-C-A **
13361507-G-GA 11205831-G-GA 9×A**
14678779-C-A 12566845-C-A **
11022925-T-C **
11022907-C-A **
11022899-C-A **
10943136-C-A **
22240940-T-C 20079054-T-C DYZ19 **
6953386-GA-G 7085345-GA-G 9×A**
21515857-CGT-C 19353971-CGT-C **
10673847-C-CTG **
11007510-C-T **
15422924-C-A 13311044-C-A **
17527344-G-A 15415464-G-A **
10028504-C-A 10190895-C-A **
14449934-C-A 12329207-C-A **
14468381-C-A 12347650-C-A **
10987788-C-T **
16914235-C-A 14802355-C-A **
23832940-C-A 21671054-C-A **
6765640-GTTTT-G 6897599-GTTTT-G 21×T**
13461561-C-T 11305885-C-T **
18147550-C-T 16035670-C-T **
4416798-C-A 4548757-C-A **
13457742-A-AG 11302066-A-AG **
56834603-C-A **
10887452-C-A **
11008991-C-A **
17382549-C-A 15270669-C-A **
21589616-C-A 19427730-C-A **
6930011-C-A 7061970-C-A **
18758986-C-A 16647106-C-A **
10678649-A-T **
22064027-C-A 19902141-C-A **
10767667-AC-A **
10969373-T-C **
21886029-C-A 19724143-C-A **
19938632-A-G 17826752-A-G P5_Prx **
11018173-C-A **
16842754-C-A 14730874-C-A **
10691478-C-G **
22996969-GAT-G 20835083-GAT-G 21×AT**
10845723-T-G **
10845708-T-G **
16666046-C-A 14554166-C-A **
3986076-C-A 4118035-C-A **
56879659-A-G **
22489617-T-G 20327731-T-G DYZ19 **
10925669-CA-C **
10801389-T-C **
5135238-C-CT 5267197-C-CT 26×T**
13223718-G-A 11068042-G-A **
13469347-T-A 11313671-T-A **
22353464-C-T 20191578-C-T DYZ19 **
10845744-T-C **
9771940-C-T 9934331-C-T 18×T**
5224926-CA-C 5356885-CA-C 19×A**
13854234-C-A 11733528-C-A **
7373236-CT-C 7505195-CT-C 29×T**
58981745-C-T 56835598-C-T **
19544172-C-A 17432292-C-A **
15631226-C-T 13519346-C-T **
13846623-C-A 11725917-C-A **
16666066-A-T 14554186-A-T **
15832215-TC-T 13720335-TC-T **
13459506-A-G 11303830-A-G A12184 **
10845736-T-G **
10845751-C-G **
10987784-C-A **
10987934-C-T **
10673881-T-A **
23421043-ATTTTT-A 21259157-ATTTTT-A 22×T**
7197304-C-A 7329263-C-A **
56828225-G-T **
4270761-C-A 4402720-C-A **
10940536-C-A **
7111083-C-A 7243042-C-A **
11007467-T-C **
10763142-A-T **
10987971-C-T **
10987940-C-T **
11007495-A-C **
3287144-C-A 3419103-C-A **
10658257-C-CATTCA **
24385117-C-A 22238970-C-A **
16783600-C-A 14671720-C-A **
28660508-C-A 26514361-C-A **
10669520-ATTCCATTCCATTCCATTCCATTCCG-A **
13218610-C-A 11062934-C-A **
24910853-C-CATATATATAT 22764706-C-CATATATATAT g1 26×AT**
7311915-C-A 7443874-C-A **
28545694-TAC-T 26399547-TAC-T **
11003775-T-G **
4671723-C-A 4803682-C-A **
14308238-C-A 12187532-C-A **
10691463-G-A **
6664399-G-T 6796358-G-T **
10691499-A-T **
3640584-C-T 3772543-C-T **
10691509-T-A **
4499863-C-A 4631822-C-A **
4345129-C-A 4477088-C-A **
4264269-G-T 4396228-G-T **
4070876-G-A 4202835-G-A **
3991955-C-T 4123914-C-T **
3847348-G-A 3979307-G-A **
3833452-C-A 3965411-C-A **
3679988-C-A 3811947-C-A **
3640588-A-C 3772547-A-C **
3592604-C-A 3724563-C-A **
4806272-G-T 4938231-G-T **
3529697-G-T 3661656-G-T **
3405489-A-G 3537448-A-G **
3387231-C-A 3519190-C-A **
3364622-C-A 3496581-C-A **
3346884-C-A 3478843-C-A **
3343138-C-A 3475097-C-A **
3285324-G-T 3417283-G-T **
3201265-A-G 3333224-A-G **
2853464-AT-A 2985423-AT-A **
6930659-C-A 7062618-C-A **
4505331-C-A 4637290-C-A **
4806299-A-T 4938258-A-T **
56857531-G-T **
5524840-CA-C 5656799-CA-C **
6064117-C-A 6196076-C-A **
6514297-C-A 6646256-C-A **
5833308-G-T 5965267-G-T **
5761045-C-A 5893004-C-A **
5689982-C-A 5821941-C-A **
5606127-C-A 5738086-C-A **
6516188-C-A 6648147-C-A **
6516659-C-T 6648618-C-T **
5586815-T-C 5718774-T-C **
5535149-CTATA-C 5667108-CTATA-C 10×TA**
5450013-G-T 5581972-G-T **
4873878-G-T 5005837-G-T **
5448579-T-C 5580538-T-C **
5399880-C-A 5531839-C-A **
5335942-T-A 5467901-T-A **
5289456-G-T 5421415-G-T **
5216690-G-T 5348649-G-T **
5216513-C-A 5348472-C-A **
5107975-T-C 5239934-T-C **
5073908-C-A 5205867-C-A **
5018199-AT-A 5150158-AT-A **
4999793-T-A 5131752-T-A **
5426539-C-A 5558498-C-A **
5840896-G-T 5972855-G-T **
14609649-C-T 12497851-C-T **
13989037-A-G 11868331-A-G **
9107937-G-T **
6589434-C-A 6721393-C-A **
6765665-G-T 6897624-G-T **
13902890-C-A 11782184-C-A **
7080829-C-A 7212788-C-A **
6765937-C-A 6897896-C-A **
6769925-C-A 6901884-C-A **
6882261-G-C 7014220-G-C **
10688033-T-G **
10763152-A-G **
10691436-A-G **
17382545-C-A 15270665-C-A **
11038180-C-A **
10686613-CTCCAT-C **
56847398-G-T **
14609685-C-T 12497887-C-T **
14609634-CAAAA-C 12497836-CAAAA-C 9×A**
15735374-C-A 13623494-C-A **
10673837-C-CCCCTG **
10691518-T-C **
10691517-T-C **
13463923-C-A 11308247-C-A **
6765699-C-A 6897658-C-A **
6534657-G-A 6666616-G-A **
3620188-G-GT 3752147-G-GT 10×T**
56851006-C-A **
10820903-C-A **
5336937-A-T 5468896-A-T **
13268954-C-A 11113278-C-A **
16342241-C-A 14230361-C-A **
14398221-T-C 12277517-T-C **
17527378-GTATA-G 15415498-GTATA-G 8×TA**
10678643-C-G **
7277048-GA-G 7409007-GA-G 12×A**
13454376-C-A 11298700-C-A **
7470626-T-A 7602585-T-A IR1_L **
11643752-T-C **
18972888-C-A 16861008-C-A **
15379730-C-A 13267850-C-A **
27870216-C-A 25724069-C-A P1_Y2 **
5170110-T-C 5302069-T-C **
22602373-C-G 20440487-C-G **
22357701-G-A 20195815-G-A DYZ19 ***
2795559-GTTTTT-G,GT 2927518-GTTTTT-G,GT 24×T***
22085827-T-C 19923941-T-C ***
22253471-G-A 20091585-G-A DYZ19 ***
3317593-TA-T 3449552-TA-T 13×A***
22575152-A-T 20413266-A-T ***
18635272-T-C 16523392-T-C Y73767 ***
12371950-C-CAAA ***
19048056-A-T 16936176-A-T ***
25592861-A-ACT 23446714-A-ACT P1_gr1 20×CT***
13328002-G-A 11172326-G-A ***
27238888-G-A 25092741-G-A P1_g3 ***
17158961-G-T 15047081-G-T ***
28545880-C-CA 26399733-C-CA 20×A***
22537330-A-G 20375444-A-G ***
13459258-T-C 11303582-T-C ***
27238881-G-A 25092734-G-A P1_g3 ***
7360059-T-C 7492018-T-C ***
22240481-C-A,T 20078595-C-A,T DYZ19 ***
13450411-CTCCATTCCATTCCATTCTATTCCATTCCATTCCAT-C,CTCCATTCCATTCCATTCTATTCCATTCCAT 11294735-CTCCATTCCATTCCATTCTATTCCATTCCATTCCAT-C,CTCCATTCCATTCCATTCTATTCCATTCCAT ***
58974953-G-A,T 56828806-G-A,T ***
7867828-A-G 7999787-A-G ***
3240658-A-AT 3372617-A-AT 13×T***
23709645-C-G 21547759-C-G ***
5885123-TAA-T 6017082-TAA-T 17×A***
56833719-AT-A ***
28765548-CAA-C 26619401-CAA-C 12×A***
13196447-C-A 11040771-C-A ***
13315763-C-A 11160087-C-A ***
8379383-CT-C 8511342-CT-C 8×T***
4076256-CAAAA-C 4208215-CAAAA-C 21×A***
19187412-TTG-G,T 17075532-TTG-G,T ***
4301306-T-TA 4433265-T-TA 12×A***
14239187-C-A 12118481-C-A ***
22843740-CTTT-C 20681854-CTTT-C 12×T***
14250212-C-T 12129506-C-T ***
14300254-C-T 12179548-C-T ***
3834867-T-C 3966826-T-C ***
15424328-C-A 13312448-C-A ***
14604590-CTTTTT-C,CTTTTTT 12492792-CTTTTT-C,CTTTTTT 21×T***
15542658-CA-C,CAA 13430778-CA-C,CAA 16×A***
19048053-A-T 16936173-A-T ***
56832331-AG-A ***
13453473-C-CATTT 11297797-C-CATTT ***
8379195-C-T 8511154-C-T ***
13453470-A-AT 11297794-A-AT ***
8281234-C-CA 8413193-C-CA 10×A***
6059092-CAAA-C 6191051-CAAA-C 25×A***
56828654-G-A ***
3970906-CT-C 4102865-CT-C 11×T***
5253170-CTTT-C 5385129-CTTT-C 23×T***
8568465-GTT-G,GT 8700424-GTT-G,GT 22×T***
5125764-A-G 5257723-A-G ***
14825824-CTTT-C,CTTTT 12713891-CTTT-C,CTTTT 18×T***
6943972-CTT-C,CT 7075931-CTT-C,CT 15×T***
28800356-C-A 26654209-C-A ***
9437463-C-A 9599854-C-A ***
10030085-T-A 10192476-T-A ***
5335855-G-T 5467814-G-T ***
11643787-T-A ***
7416875-A-T 7548834-A-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 1841361086530079052398005922
Kit: 184136989590480649567967756
Kit: 1841361493368293482048310485
Used in age calculations1493368293482048310485
Counts of SNPs82
Variant counts last updated 2019-07-19 22:46:33.



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