Caldwell
FTDNA: 137235, BigY2: 137235, YFull-BigY: YF01984MDKA Birth: Ireland
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 137235 | BigY2 137235 |
---|---|---|---|---|---|---|---|---|---|
13687150-C-A | 11531474-C-A | DYZ17 | A* | ||||||
10007638-G-A | 10170029-G-A | FGC65721 | Y | ** | + | ||||
14424538-C-T | 12303813-C-T | FGC65726 | Y | Y | + | + | |||
16841094-C-T | 14729214-C-T | Z13935 | Y | Y | + | + | |||
16962201-G-C | 14850321-G-C | FGC65729 | Y | Y | + | + | |||
22458028-T-A | 20296142-T-A | BY220041 | DYZ19 | *** | + | ||||
22462312-G-T | 20300426-G-T | FGC65733 | DYZ19 | + | + | ||||
22458029-C-T | 20296143-C-T | Y29216 | BY157030 | DYZ19 | + | ||||
9707941-C-G | 9870332-C-G | BY46734 | IR3_Prx | *** | * | ||||
22279176-G-T | 20117290-G-T | DYZ19 | *** | * | |||||
16020943-A-G | 13909063-A-G | CTS5109 | ** | ** | |||||
17270610-G-T | 15158730-G-T | ** | ** | ||||||
28595655-T-G | 26449508-T-G | CTS12495 | ** | ||||||
28595664-C-T | 26449517-C-T | CTS12496 | ** | ||||||
22234175-G-T | 20072289-G-T | DYZ19 | ** | ||||||
8776576-T-G | 8908535-T-G | ** | |||||||
21134911-A-C | 18973025-A-C | ** | |||||||
28700799-G-A | 26554652-G-A | ** | |||||||
20809669-C-A | 18647783-C-A | P4_Gap | ** | ||||||
13611177-C-T | 11455501-C-T | ** | |||||||
21315242-C-A | 19153356-C-A | ** | |||||||
13611200-A-T | 11455524-A-T | ** | |||||||
13611210-T-G | 11455534-T-G | ** | |||||||
28062632-A-G | 25916485-A-G | P1_Y2 | ** | ||||||
13465643-C-A | 11309967-C-A | ** | |||||||
28758096-C-A | 26611949-C-A | ** | |||||||
5808311-CAT-C | 5940270-CAT-C | ** | |||||||
4229501-C-A | 4361460-C-A | ** | |||||||
10928801-C-T | ** | ||||||||
10928824-A-T | ** | ||||||||
15731351-C-A | 13619471-C-A | ** | |||||||
18564994-T-A | 16453114-T-A | ** | |||||||
10925351-C-G | ** | ||||||||
14598783-G-T | 12486983-G-T | ** | |||||||
5605955-C-A | 5737914-C-A | ** | |||||||
28618363-C-A | 26472216-C-A | ** | |||||||
10987753-A-ACACTC | ** | ||||||||
10925012-C-CTACCTCATTT | ** | ||||||||
10925023-C-T | ** | ||||||||
10925035-T-C | ** | ||||||||
10980622-G-A | ** | ||||||||
23633397-T-G | 21471511-T-G | ** | |||||||
15171489-A-G | 13059575-A-G | ** | |||||||
16739491-C-A | 14627611-C-A | ** | |||||||
10959083-C-A | ** | ||||||||
7048511-C-A | 7180470-C-A | ** | |||||||
18210968-C-T | 16099088-C-T | ** | |||||||
10657242-C-T | ** | ||||||||
10962756-CCCACT-C | ** | ||||||||
10986695-C-A | ** | ||||||||
28510312-A-T | 26364165-A-T | ** | |||||||
11025460-A-G | ** | ||||||||
11025464-C-G | ** | ||||||||
16184190-C-A | 14072310-C-A | ** | |||||||
28653879-C-A | 26507732-C-A | ** | |||||||
18901247-C-A | 16789367-C-A | ** | |||||||
10939774-C-A | ** | ||||||||
5956929-C-A | 6088888-C-A | ** | |||||||
23720447-A-G | 21558561-A-G | ** | |||||||
13214048-C-A | 11058372-C-A | ** | |||||||
13855657-C-A | 11734951-C-A | DYZ17 | ** | ||||||
22235700-G-A | 20073814-G-A | DYZ19 | ** | ||||||
4229521-C-A | 4361480-C-A | ** | |||||||
9082197-C-A | 9244588-C-A | ** | |||||||
14468362-C-A | 12347631-C-A | ** | |||||||
10759914-C-A | ** | ||||||||
8674165-C-A | 8806124-C-A | ** | |||||||
13996349-C-A | 11875643-C-A | ** | |||||||
10973643-G-A | ** | ||||||||
22613894-C-A | 20452008-C-A | ** | |||||||
10969244-T-A | ** | ||||||||
10969277-A-ATTATT | ** | ||||||||
15116501-G-T | 13004588-G-T | ** | |||||||
14986164-C-A | 12874232-C-A | ** | |||||||
3712126-C-A | 3844085-C-A | ** | |||||||
10949642-C-A | ** | ||||||||
10983834-C-A | ** | ||||||||
14508487-C-A | 12396692-C-A | ** | |||||||
14988815-C-A | 12876881-C-A | ** | |||||||
15677360-G-T | 13565480-G-T | ** | |||||||
3286334-C-A | 3418293-C-A | ** | |||||||
10989012-T-C | ** | ||||||||
10989011-T-C | ** | ||||||||
4112994-C-A | 4244953-C-A | ** | |||||||
7990339-G-T | 8122298-G-T | ** | |||||||
23127782-C-A | 20965896-C-A | ** | |||||||
11030192-C-A | ** | ||||||||
11030193-C-G | ** | ||||||||
10659808-C-A | ** | ||||||||
7011447-C-A | 7143406-C-A | ** | |||||||
4547645-C-A | 4679604-C-A | ** | |||||||
6355710-G-T | 6487669-G-T | ** | |||||||
5626079-C-A | 5758038-C-A | ** | |||||||
21068451-A-T | 18906565-A-T | 17×AT | ** | ||||||
23997106-C-A | 21850959-C-A | ** | |||||||
9108702-C-A | ** | ||||||||
6065008-C-A | 6196967-C-A | ** | |||||||
10940111-T-C | ** | ||||||||
28484755-C-A | 26338608-C-A | ** | |||||||
5458690-C-A | 5590649-C-A | ** | |||||||
13505183-C-A | 11349507-C-A | ** | |||||||
2771833-G-T | 2903792-G-T | ** | |||||||
2772582-C-A | 2904541-C-A | ** | |||||||
2774001-C-A | 2905960-C-A | ** | |||||||
2888850-GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGC-G | 3020809-GACAGAGCGAGACTCCGTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAATGC-G | ** | |||||||
2938557-T-C | 3070516-T-C | ** | |||||||
2938626-A-C | 3070585-A-C | ** | |||||||
3007120-C-A | 3139079-C-A | ** | |||||||
3143233-A-G | 3275192-A-G | ** | |||||||
3253128-C-T | 3385087-C-T | ** | |||||||
3253132-C-T | 3385091-C-T | ** | |||||||
3253170-CTTTTT-C | 3385129-CTTTTT-C | 22×T | ** | ||||||
3260309-C-A | 3392268-C-A | ** | |||||||
3275743-C-A | 3407702-C-A | ** | |||||||
3299785-G-T | 3431744-G-T | ** | |||||||
3393719-C-A | 3525678-C-A | ** | |||||||
3393858-T-C | 3525817-T-C | ** | |||||||
3535773-C-A | 3667732-C-A | ** | |||||||
3689091-C-A | 3821050-C-A | ** | |||||||
3734112-G-T | 3866071-G-T | ** | |||||||
3865170-C-A | 3997129-C-A | ** | |||||||
3890012-C-A | 4021971-C-A | ** | |||||||
3993528-A-G | 4125487-A-G | ** | |||||||
4174399-T-C | 4306358-T-C | ** | |||||||
4179022-A-T | 4310981-A-T | ** | |||||||
4201036-C-A | 4332995-C-A | ** | |||||||
4222641-T-C | 4354600-T-C | ** | |||||||
4225700-G-T | 4357659-G-T | ** | |||||||
4241368-G-A | 4373327-G-A | ** | |||||||
4271895-C-A | 4403854-C-A | ** | |||||||
4417619-C-A | 4549578-C-A | ** | |||||||
4426109-G-A | 4558068-G-A | ** | |||||||
4433432-C-A | 4565391-C-A | ** | |||||||
4504659-A-G | 4636618-A-G | ** | |||||||
4605639-G-T | 4737598-G-T | ** | |||||||
4785154-G-T | 4917113-G-T | ** | |||||||
4887826-C-A | 5019785-C-A | ** | |||||||
4995281-C-A | 5127240-C-A | ** | |||||||
5099440-G-T | 5231399-G-T | ** | |||||||
5215766-C-A | 5347725-C-A | ** | |||||||
5219879-C-A | 5351838-C-A | ** | |||||||
5293733-T-C | 5425692-T-C | ** | |||||||
5320705-G-T | 5452664-G-T | ** | |||||||
5359718-G-T | 5491677-G-T | ** | |||||||
5410067-C-A | 5542026-C-A | ** | |||||||
5446989-C-A | 5578948-C-A | ** | |||||||
5586671-G-T | 5718630-G-T | ** | |||||||
5690105-A-T | 5822064-A-T | ** | |||||||
5745439-G-T | 5877398-G-T | ** | |||||||
5755176-T-A | 5887135-T-A | ** | |||||||
5869508-CT-C | 6001467-CT-C | ** | |||||||
6056240-C-A | 6188199-C-A | ** | |||||||
6065082-C-A | 6197041-C-A | ** | |||||||
6085406-A-G | 6217365-A-G | ** | |||||||
6179619-T-G | 6311578-T-G | IR3_Dst | ** | ||||||
6279811-A-G | 6411770-A-G | IR3_Dst | ** | ||||||
6329460-C-A | 6461419-C-A | IR3_Dst | ** | ||||||
6414294-T-C | 6546253-T-C | ** | |||||||
6520216-C-A | 6652175-C-A | ** | |||||||
6582322-C-A | 6714281-C-A | ** | |||||||
6699113-C-A | 6831072-C-A | ** | |||||||
6712893-T-G | 6844852-T-G | ** | |||||||
6828478-A-G | 6960437-A-G | ** | |||||||
6858798-C-A | 6990757-C-A | ** | |||||||
6976326-C-T | 7108285-C-T | ** | |||||||
7000358-C-A | 7132317-C-A | ** | |||||||
7013593-C-A | 7145552-C-A | ** | |||||||
7038560-C-A | 7170519-C-A | ** | |||||||
7044099-A-G | 7176058-A-G | ** | |||||||
7045476-C-A | 7177435-C-A | ** | |||||||
7048516-C-A | 7180475-C-A | ** | |||||||
7063230-T-A | 7195189-T-A | ** | |||||||
7086788-A-G | 7218747-A-G | ** | |||||||
7127466-C-A | 7259425-C-A | FT126356 | ** | ||||||
7132655-G-T | 7264614-G-T | ** | |||||||
7150743-G-T | 7282702-G-T | ** | |||||||
7224225-C-A | 7356184-C-A | ** | |||||||
7407302-C-A | 7539261-C-A | ** | |||||||
7424442-C-A | 7556401-C-A | ** | |||||||
7433559-C-A | 7565518-C-A | ** | |||||||
7664613-C-A | 7796572-C-A | ** | |||||||
7824853-C-A | 7956812-C-A | ** | |||||||
7861739-A-T | 7993698-A-T | ** | |||||||
7861891-C-T | 7993850-C-T | ** | |||||||
7861928-C-A | 7993887-C-A | ** | |||||||
8077408-T-C | 8209367-T-C | ** | |||||||
8077859-C-A | 8209818-C-A | ** | |||||||
8140470-T-C | 8272429-T-C | ** | |||||||
8166819-G-T | 8298778-G-T | ** | |||||||
8481243-A-T | 8613202-A-T | ** | |||||||
8481250-A-T | 8613209-A-T | ** | |||||||
8766233-C-CA | 8898192-C-CA | ** | |||||||
8766455-A-G | 8898414-A-G | ** | |||||||
8851198-G-C | 8983157-G-C | ** | |||||||
8911891-TG-T | 9043850-TG-T | ** | |||||||
8913951-C-T | 9045910-C-T | ** | |||||||
8988335-C-A | 9150726-C-A | ** | |||||||
9082199-C-A | 9244590-C-A | ** | |||||||
9094562-A-G | 9256953-A-G | ** | |||||||
9231612-A-G | 9394003-A-G | ** | |||||||
9500028-C-A | 9662419-C-A | ** | |||||||
9501150-A-G | 9663541-A-G | ** | |||||||
9678417-T-C | 9840808-T-C | IR3_Prx | ** | ||||||
9799130-C-T | 9961521-C-T | ** | |||||||
9931501-A-G | 10093892-A-G | ** | |||||||
9962635-G-A | 10125026-G-A | ** | |||||||
10011302-G-T | 10173693-G-T | ** | |||||||
10032787-A-G | 10195178-A-G | ** | |||||||
10649041-T-C | FT428136 | ** | |||||||
10662146-G-C | ** | ||||||||
10663230-C-A | ** | ||||||||
10664178-G-A | ** | ||||||||
10664188-C-A | ** | ||||||||
10667008-C-CTATTG | ** | ||||||||
10667016-T-TTGCAATCGAGTTGAA | ** | ||||||||
10687319-A-G | ** | ||||||||
10749141-C-T | ** | ||||||||
10781676-AATTCCATTCCATTCCATTCCATTCCATTCC-A | ** | ||||||||
10784631-C-A | ** | ||||||||
10796181-C-G | FT431576 | ** | |||||||
10796188-A-C | ** | ||||||||
10796189-C-A | ** | ||||||||
10813364-C-A | ** | ||||||||
10817626-C-T | ** | ||||||||
10821079-C-A | FT183142 | ** | |||||||
10825268-T-G | ** | ||||||||
10848876-C-A | ** | ||||||||
10867092-C-A | ** | ||||||||
10877682-C-G | ** | ||||||||
10877692-C-A | ** | ||||||||
10900367-T-C | ** | ||||||||
10907587-C-A | ** | ||||||||
10925346-C-G | ** | ||||||||
10925350-A-G | ** | ||||||||
10925361-CT-C | ** | ||||||||
10925368-C-T | ** | ||||||||
10928833-C-G | ** | ||||||||
10928841-C-T | ** | ||||||||
10928843-T-C | ** | ||||||||
10928846-C-T | ** | ||||||||
10937404-C-G | ** | ||||||||
10937470-C-T | ** | ||||||||
10939769-C-T | ** | ||||||||
10939781-C-CGACCA | ** | ||||||||
10942746-C-CA | ** | ||||||||
10973773-C-A | ** | ||||||||
10974889-C-A | ** | ||||||||
10984393-C-A | ** | ||||||||
10989002-C-T | ** | ||||||||
10989016-T-A | ** | ||||||||
10989017-C-A | ** | ||||||||
10989058-ATTCAG-A | ** | ||||||||
10991210-C-A | ** | ||||||||
10995697-C-A | ** | ||||||||
11010443-G-T | ** | ||||||||
11019644-T-C | ** | ||||||||
11034014-T-C | ** | ||||||||
13215560-C-T | 11059884-C-T | ** | |||||||
13257575-C-A | 11101899-C-A | ** | |||||||
13288501-A-G | 11132825-A-G | ** | |||||||
13298213-A-G | 11142537-A-G | ** | |||||||
13320652-C-A | 11164976-C-A | ** | |||||||
13320912-C-A | 11165236-C-A | ** | |||||||
13446305-T-C | 11290629-T-C | ** | |||||||
13487127-C-CAG | 11331451-C-CAG | ** | |||||||
13487672-A-GAAAAGCT | 11331996-A-GAAAAGCT | ** | |||||||
13487674-C-CCCCG | 11331998-C-CCCCG | ** | |||||||
13579842-A-G | 11424166-A-G | ** | |||||||
13604404-G-A | 11448728-G-A | ** | |||||||
13611171-C-T | 11455495-C-T | ** | |||||||
13611172-T-G | 11455496-T-G | ** | |||||||
13611176-G-A | 11455500-G-A | ** | |||||||
13611188-C-CTT | 11455512-C-CTT | ** | |||||||
13637404-C-A | 11481728-C-A | FT219821 | ** | ||||||
13638011-T-A | 11482335-T-A | ** | |||||||
11649588-G-GACTCA | DYZ17 | ** | |||||||
11649591-A-T | DYZ17 | ** | |||||||
11649596-A-T | DYZ17 | ** | |||||||
11649597-A-G | DYZ17 | ** | |||||||
11649600-A-C | DYZ17 | ** | |||||||
11650406-G-A | FT233335 | DYZ17 | ** | ||||||
13859215-G-T | 11738509-G-T | DYZ17 | ** | ||||||
13937228-C-T | 11816522-C-T | ** | |||||||
13937273-C-A | 11816567-C-A | ** | |||||||
13989099-C-A | 11868393-C-A | ** | |||||||
13999378-C-A | 11878672-C-A | ** | |||||||
14065558-C-A | 11944852-C-A | ** | |||||||
14184548-T-G | 12063842-T-G | ** | |||||||
14256061-G-T | 12135355-G-T | ** | |||||||
14269690-T-A | 12148984-T-A | ** | |||||||
14269803-A-G | 12149097-A-G | ** | |||||||
14324640-C-A | 12203934-C-A | ** | |||||||
14339235-C-A | 12218530-C-A | ** | |||||||
14367693-A-C | 12246989-A-C | ** | |||||||
14395951-C-A | 12275247-C-A | ** | |||||||
14402491-C-A | 12281788-C-A | ** | |||||||
14422248-C-A | 12301523-C-A | ** | |||||||
14449758-C-A | 12329031-C-A | ** | |||||||
14461288-G-T | 12340561-G-T | ** | |||||||
14474773-C-A | 12354042-C-A | ** | |||||||
14518925-C-A | 12407126-C-A | ** | |||||||
14529013-C-A | 12417214-C-A | ** | |||||||
14563328-C-A | 12451528-C-A | ** | |||||||
14605684-C-A | 12493886-C-A | ** | |||||||
14622898-C-A | 12511096-C-A | ** | |||||||
14648708-C-A | 12536773-C-A | ** | |||||||
14704166-A-T | 12592232-A-T | ** | |||||||
14704173-T-A | 12592239-T-A | ** | |||||||
14704178-T-A | 12592244-T-A | ** | |||||||
14704185-A-T | 12592251-A-T | ** | |||||||
14717352-G-T | 12605420-G-T | ** | |||||||
14720085-G-T | 12608153-G-T | ** | |||||||
14757409-C-A | 12645478-C-A | ** | |||||||
14832080-C-A | 12720147-C-A | ** | |||||||
15137965-C-A | 13026052-C-A | ** | |||||||
15218668-G-A | 13106754-G-A | ** | |||||||
15220948-C-A | 13109034-C-A | ** | |||||||
15280312-C-A | 13168411-C-A | ** | |||||||
15420253-T-A | 13308373-T-A | ** | |||||||
15450403-GAAAA-G | 13338523-GAAAA-G | 14×A | ** | ||||||
15497959-G-A | 13386079-G-A | ** | |||||||
15503307-C-T | 13391427-C-T | ** | |||||||
15608180-C-A | 13496300-C-A | ** | |||||||
15619364-C-A | 13507484-C-A | ** | |||||||
15756435-C-A | 13644555-C-A | ** | |||||||
15769036-C-A | 13657156-C-A | ** | |||||||
15774667-G-T | 13662787-G-T | ** | |||||||
15858093-G-T | 13746213-G-T | ** | |||||||
15899005-C-A | 13787125-C-A | ** | |||||||
15909409-A-G | 13797529-A-G | ** | |||||||
15971214-G-C | 13859334-G-C | ** | |||||||
15971653-C-A | 13859773-C-A | ** | |||||||
15995612-C-A | 13883732-C-A | ** | |||||||
15997434-A-T | 13885554-A-T | ** | |||||||
15999751-G-T | 13887871-G-T | ** | |||||||
16001153-A-T | 13889273-A-T | ** | |||||||
16003977-C-A | 13892097-C-A | ** | |||||||
16007038-A-G | 13895158-A-G | ** | |||||||
16041061-G-A | 13929181-G-A | ** | |||||||
16044415-C-A | 13932535-C-A | ** | |||||||
16062372-C-A | 13950492-C-A | ** | |||||||
16070761-C-A | 13958881-C-A | ** | |||||||
16181155-C-T | 14069275-C-T | ** | |||||||
16181174-C-A | 14069294-C-A | ** | |||||||
16181181-T-C | 14069301-T-C | ** | |||||||
16220843-T-C | 14108963-T-C | ** | |||||||
16240924-C-A | 14129044-C-A | ** | |||||||
16309435-GGTGGTGGGAC-G | 14197555-GGTGGTGGGAC-G | ** | |||||||
16322403-C-T | 14210523-C-T | ** | |||||||
16429717-C-T | 14317837-C-T | ** | |||||||
16429973-C-A | 14318093-C-A | ** | |||||||
16574924-C-A | 14463044-C-A | ** | |||||||
16682696-G-T | 14570816-G-T | ** | |||||||
16704492-G-T | 14592612-G-T | ** | |||||||
16704700-G-T | 14592820-G-T | ** | |||||||
16942157-C-A | 14830277-C-A | ** | |||||||
16944599-G-T | 14832719-G-T | ** | |||||||
17006327-C-A | 14894447-C-A | ** | |||||||
17038659-T-C | 14926779-T-C | ** | |||||||
17065120-C-A | 14953240-C-A | ** | |||||||
17066072-TTAAAGAAAAAAGAATA-T | 14954192-TTAAAGAAAAAAGAATA-T | ** | |||||||
17090820-C-A | 14978940-C-A | ** | |||||||
17093627-A-G | 14981747-A-G | ** | |||||||
17104205-T-C | 14992325-T-C | ** | |||||||
17115116-G-A | 15003236-G-A | ** | |||||||
17127075-C-A | 15015195-C-A | ** | |||||||
17177205-A-T | 15065325-A-T | ** | |||||||
17203329-T-TC | 15091449-T-TC | ** | |||||||
17231342-C-A | 15119462-C-A | ** | |||||||
17257547-A-C | 15145667-A-C | ** | |||||||
17434042-C-A | 15322162-C-A | ** | |||||||
17480249-C-A | 15368369-C-A | ** | |||||||
17491998-C-A | 15380118-C-A | ** | |||||||
17499137-G-T | 15387257-G-T | ** | |||||||
17548462-C-A | 15436582-C-A | ** | |||||||
17561508-C-A | 15449628-C-A | ** | |||||||
17567471-C-A | 15455591-C-A | ** | |||||||
17616954-C-A | 15505074-C-A | ** | |||||||
17683705-C-A | 15571825-C-A | ** | |||||||
17716853-C-A | 15604973-C-A | ** | |||||||
17757636-C-A | 15645756-C-A | ** | |||||||
17779478-T-A | 15667598-T-A | ** | |||||||
17870835-G-T | 15758955-G-T | ** | |||||||
18008666-T-C | 15896786-T-C | P7_Dst | ** | ||||||
18153556-C-A | 16041676-C-A | ** | |||||||
18242100-A-G | 16130220-A-G | ** | |||||||
18242136-CA-C | 16130256-CA-C | ** | |||||||
18289745-T-C | 16177865-T-C | P6_Prx | ** | ||||||
18406879-G-A | 16294999-G-A | P6_Gap | ** | ||||||
18422934-C-A | 16311054-C-A | P6_Gap | ** | ||||||
18748987-G-T | 16637107-G-T | ** | |||||||
18793622-G-T | 16681742-G-T | ** | |||||||
18847979-T-C | 16736099-T-C | ** | |||||||
18856240-A-G | 16744360-A-G | ** | |||||||
18901209-C-A | 16789329-C-A | ** | |||||||
19072509-C-A | 16960629-C-A | ** | |||||||
19117314-A-G | 17005434-A-G | ** | |||||||
19129349-C-A | 17017469-C-A | ** | |||||||
19145517-C-A | 17033637-C-A | ** | |||||||
19324402-C-A | 17212522-C-A | ** | |||||||
19331682-A-C | 17219802-A-C | ** | |||||||
19418312-C-A | 17306432-C-A | ** | |||||||
19429384-A-G | 17317504-A-G | ** | |||||||
19930061-T-TG | 17818181-T-TG | P5_Prx | ** | ||||||
19930109-C-G | 17818229-C-G | P5_Prx | ** | ||||||
20025430-CTCCTCT-C | 17913550-CTCCTCT-C | P5_Prx | ** | ||||||
20087762-A-AAG | 17975882-A-AAG | P5_Dst | ** | ||||||
20478244-C-T | 18316358-C-T | P5_Dst | ** | ||||||
20478274-A-T | 18316388-A-T | P5_Dst | ** | ||||||
20478289-A-T | 18316403-A-T | P5_Dst | ** | ||||||
20746032-AC-A | 18584146-AC-A | P4_Prx | ** | ||||||
20770593-TAAAGAAGA-T | 18608707-TAAAGAAGA-T | P4_Prx | ** | ||||||
20840772-G-C | 18678886-G-C | FTB46165 | P4_Gap | ** | |||||
21048392-C-A | 18886506-C-A | ** | |||||||
21048625-TC-T | 18886739-TC-T | ** | |||||||
21136670-C-T | 18974784-C-T | ** | |||||||
21201086-C-A | 19039200-C-A | ** | |||||||
21201883-A-G | 19039997-A-G | ** | |||||||
21202334-T-G | 19040448-T-G | ** | |||||||
21262669-C-A | 19100783-C-A | ** | |||||||
21268148-C-A | 19106262-C-A | ** | |||||||
21367566-C-A | 19205680-C-A | ** | |||||||
21367686-C-A | 19205800-C-A | ** | |||||||
21501838-T-C | 19339952-T-C | ** | |||||||
21748225-C-A | 19586339-C-A | ** | |||||||
22076182-G-T | 19914296-G-T | Y77702 | ** | ||||||
22076964-C-A | 19915078-C-A | ** | |||||||
22517179-C-CA | 20355293-C-CA | ** | |||||||
22517297-C-A | 20355411-C-A | ** | |||||||
22518162-T-A | 20356276-T-A | ** | |||||||
22542395-G-A | 20380509-G-A | ** | |||||||
22548288-C-A | 20386402-C-A | ** | |||||||
22562945-C-A | 20401059-C-A | FTB13089 | ** | ||||||
22644747-C-A | 20482861-C-A | ** | |||||||
22811169-A-G | 20649283-A-G | ** | |||||||
22899840-C-A | 20737954-C-A | ** | |||||||
22965483-C-A | 20803597-C-A | ** | |||||||
22979306-T-C | 20817420-T-C | FT255112 | ** | ||||||
22995089-T-C | 20833203-T-C | FT26317 | ** | ||||||
23368801-C-G | 21206915-C-G | ** | |||||||
23373026-C-A | 21211140-C-A | ** | |||||||
21751077-G-A | ** | ||||||||
21754398-T-A | ** | ||||||||
26010348-G-C | 23864201-G-C | P1_Y1 | ** | ||||||
26010380-GT-G | 23864233-GT-G | P1_Y1 | ** | ||||||
26041915-C-A | 23895768-C-A | P1_Y1 | ** | ||||||
26146783-T-C | 24000636-T-C | P1_Y1 | ** | ||||||
26181958-T-C | 24035811-T-C | P1_Y1 | ** | ||||||
26454972-C-A | 24308825-C-A | P1_Y1 | ** | ||||||
27216604-G-T | 25070457-G-T | P1_g3 | ** | ||||||
27561716-C-A | 25415569-C-A | P1_Y2 | 16×A | ** | |||||
27699927-C-CAT | 25553780-C-CAT | P1_Y2 | ** | ||||||
27972860-T-TGTCAG | 25826713-T-TGTCAG | P1_Y2 | ** | ||||||
28463957-C-T | 26317810-C-T | ** | |||||||
28500922-C-A | 26354775-C-A | ** | |||||||
28501004-C-A | 26354857-C-A | ** | |||||||
28534637-G-T | 26388490-G-T | ** | |||||||
28537838-C-A | 26391691-C-A | ** | |||||||
28562478-C-A | 26416331-C-A | ** | |||||||
28650791-C-A | 26504644-C-A | ** | |||||||
28651875-G-T | 26505728-G-T | ** | |||||||
28700808-C-T | 26554661-C-T | ** | |||||||
28726627-TG-T | 26580480-TG-T | ** | |||||||
28760763-G-A | 26614616-G-A | ** | |||||||
56835906-CTCCACTCCACTCAAT-C | ** | ||||||||
56841723-T-C | ** | ||||||||
56876572-C-A | ** | ||||||||
24312092-T-C | 22165945-T-C | P3_t1 | *** | ||||||
25288626-G-C | 23142479-G-C | P2_r1 | *** | ||||||
26567496-G-C | 24421349-G-C | P1_g2 | *** | ||||||
3148446-A-G | 3280405-A-G | *** | |||||||
10764520-A-T | *** | ||||||||
2763817-T-C | 2895776-T-C | *** | |||||||
21201064-C-A | 19039178-C-A | *** | |||||||
18184895-C-A | 16073015-C-A | *** | |||||||
8720677-C-A | 8852636-C-A | *** | |||||||
10895770-C-A | *** | ||||||||
2892542-ATTTT-A,ATTTTT | 3024501-ATTTT-A,ATTTTT | 18×T | *** | ||||||
3122986-C-A | 3254945-C-A | *** | |||||||
6039740-C-A | 6171699-C-A | *** | |||||||
7897485-T-C | 8029444-T-C | *** | |||||||
10691964-C-A | *** | ||||||||
10909723-G-T | *** | ||||||||
11003723-CA-C,GA | *** | ||||||||
13220086-G-T | 11064410-G-T | *** | |||||||
13326371-C-G | 11170695-C-G | *** | |||||||
13457742-ATTCC-A | 11302066-ATTCC-A | *** | |||||||
13487836-A-G | 11332160-A-G | *** | |||||||
13487839-G-A | 11332163-G-A | *** | |||||||
11649617-G-C | DYZ17 | *** | |||||||
13835120-G-C | 11714414-G-C | DYZ17 | *** | ||||||
13865914-G-T | 11745208-G-T | DYZ17 | *** | ||||||
14424023-G-T | 12303298-G-T | *** | |||||||
14884698-GAAAAAAAAAAAAA-G,GAAA | 12772764-GAAAAAAAAAAAAA-G,GAAA | 26×A | *** | ||||||
15859437-CTTTTT-C,CTTTT | 13747557-CTTTTT-C,CTTTT | 17×T | *** | ||||||
15944288-G-T | 13832408-G-T | *** | |||||||
16029055-C-A | 13917175-C-A | *** | |||||||
17390034-AAAT-A | 15278154-AAAT-A | *** | |||||||
17603293-C-A | 15491413-C-A | *** | |||||||
17652422-GGA-G | 15540542-GGA-G | *** | |||||||
17928741-C-A | 15816861-C-A | *** | |||||||
18838742-C-A | 16726862-C-A | *** | |||||||
19547231-A-G | 17435351-A-G | *** | |||||||
21836738-CTTTT-C,CTT | 19674852-CTTTT-C,CTT | 15×T | *** | ||||||
22013232-G-T | 19851346-G-T | *** | |||||||
22115447-CT-C,CTT | 19953561-CT-C,CTT | 12×T | *** | ||||||
27527356-G-T | 25381209-G-T | P1_Y2 | *** | ||||||
56833309-GCCATTCCATTC-G | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.