Halsall

FTDNA: 271001, BigY2: 271001

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > BY1058 > L881 > A7385 > b38:26668343T>G > BY32642

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRFTDNA
271001		BigY2
271001
hg19:Y:7214084-C-T hg38:Y:7346043-C-T BY63951 YY++
hg19:Y:14406984-C-G hg38:Y:12286282-C-G BY95527 YY++
hg19:Y:17487808-C-A hg38:Y:15375928-C-A BY115157 YY++
hg19:Y:16623654-G-A hg38:Y:14511774-G-A BY109031 Y+
hg19:Y:21235365-CATG-C hg38:Y:19073479-CATG-C *
hg19:Y:14379852-C-A hg38:Y:12259148-C-A **
hg19:Y:17467039-T-C hg38:Y:15355159-T-C PR2501 FT199126 **
hg19:Y:16282197-T-A hg38:Y:14170317-T-A 16282197-T-AY95844 **
hg19:Y:2869019-G-T hg38:Y:3000978-G-T **
hg19:Y:18951471-A-G hg38:Y:16839591-A-G CTS9536 **
hg19:Y:22993388-A-T hg38:Y:20831502-A-T CTS11182 **
hg19:Y:16437317-A-C hg38:Y:14325437-A-C PR2177 **
hg19:Y:17052028-C-T hg38:Y:14940148-C-T **
hg19:Y:17684528-C-T hg38:Y:15572648-C-T Y14125 **
hg19:Y:22645617-GCA-G hg38:Y:20483731-GCA-G **
hg19:Y:58989990-A-G hg38:Y:56843843-A-G **
hg19:Y:58990005-T-A hg38:Y:56843858-T-A **
hg19:Y:2757606-A-C hg38:Y:2889565-A-C **
hg19:Y:14217321-G-T hg38:Y:12096615-G-T **
hg19:Y:15422824-G-C hg38:Y:13310944-G-C PR1786 **
hg19:Y:15422844-G-A hg38:Y:13310964-G-A **
hg19:Y:15446231-A-G hg38:Y:13334351-A-G PR5514 **
hg19:Y:23052598-T-C hg38:Y:20890712-T-C PF7198 **
hg19:Y:25990667-A-T hg38:Y:23844520-A-T P1_Y1 **
hg19:Y:14966488-C-T hg38:Y:12854563-C-T Y67526 **
hg19:Y:28463806-C-A hg38:Y:26317659-C-A FGC70696 **
hg19:Y:23397142-C-A hg38:Y:21235256-C-A **
hg19:Y:23439934-A-G hg38:Y:21278048-A-G **
hg19:Y:7379715-G-T hg38:Y:7511674-G-T **
hg19:Y:18382132-G-A hg38:Y:16270252-G-A P6_Gap **
hg19:Y:17090872-G-T hg38:Y:14978992-G-T **
hg19:Y:7014721-C-A hg38:Y:7146680-C-A **
hg38:Y:56846026-T-G **
hg19:Y:17434160-C-A hg38:Y:15322280-C-A **
hg19:Y:6179616-A-G hg38:Y:6311575-A-G IR3_Dst **
hg19:Y:22176752-C-A hg38:Y:20014866-C-A **
hg38:Y:10686668-C-A **
hg19:Y:18982492-C-A hg38:Y:16870612-C-A **
hg19:Y:15183677-C-A hg38:Y:13071763-C-A **
hg19:Y:5698868-G-T hg38:Y:5830827-G-T **
hg19:Y:21362832-C-A hg38:Y:19200946-C-A **
hg19:Y:14067309-C-A hg38:Y:11946603-C-A **
hg19:Y:18147551-G-A hg38:Y:16035671-G-A **
hg19:Y:16002468-C-A hg38:Y:13890588-C-A **
hg38:Y:10805450-T-A **
hg19:Y:8776631-C-T hg38:Y:8908590-C-T **
hg19:Y:15410631-C-T hg38:Y:13298751-C-T **
hg19:Y:17306355-C-A hg38:Y:15194475-C-A **
hg19:Y:13835092-C-A hg38:Y:11714386-C-A DYZ17 **
hg19:Y:7415560-G-T hg38:Y:7547519-G-T **
hg19:Y:8776575-G-T hg38:Y:8908534-G-T FT256436 **
hg19:Y:27527180-C-A hg38:Y:25381033-C-A P1_Y2 **
hg38:Y:10790044-C-A **
hg19:Y:5449827-G-T hg38:Y:5581786-G-T **
hg19:Y:23315841-A-T hg38:Y:21153955-A-T **
hg19:Y:23315842-A-T hg38:Y:21153956-A-T **
hg19:Y:15114890-C-A hg38:Y:13002977-C-A **
hg19:Y:10010636-G-T hg38:Y:10173027-G-T **
hg19:Y:7166640-ATT-A hg38:Y:7298599-ATT-A 12×T**
hg19:Y:28542905-C-A hg38:Y:26396758-C-A **
hg19:Y:2719108-T-A hg38:Y:2851067-T-A **
hg19:Y:19117393-C-A hg38:Y:17005513-C-A Y131738 **
hg19:Y:10020308-C-A hg38:Y:10182699-C-A **
hg38:Y:10669489-C-T **
hg19:Y:23066938-C-A hg38:Y:20905052-C-A **
hg19:Y:6144628-G-A hg38:Y:6276587-G-A IR3_Dst **
hg19:Y:28461497-C-A hg38:Y:26315350-C-A **
hg19:Y:17361040-C-A hg38:Y:15249160-C-A **
hg19:Y:18868919-C-A hg38:Y:16757039-C-A **
hg19:Y:7247524-C-T hg38:Y:7379483-C-T **
hg19:Y:17716799-C-A hg38:Y:15604919-C-A **
hg19:Y:16701909-G-T hg38:Y:14590029-G-T **
hg19:Y:18864755-C-A hg38:Y:16752875-C-A **
hg19:Y:6460022-T-C hg38:Y:6591981-T-C **
hg38:Y:10686604-T-A **
hg19:Y:16095142-G-T hg38:Y:13983262-G-T **
hg19:Y:22794034-C-A hg38:Y:20632148-C-A **
hg19:Y:16481198-C-A hg38:Y:14369318-C-A **
hg19:Y:18739621-C-A hg38:Y:16627741-C-A **
hg19:Y:7196304-C-A hg38:Y:7328263-C-A **
hg38:Y:10669473-C-T **
hg38:Y:10673908-C-CTTTTG **
hg19:Y:9384568-A-C hg38:Y:9546959-A-C **
hg19:Y:27546769-A-T hg38:Y:25400622-A-T P1_Y2 **
hg19:Y:15364054-CGT-C hg38:Y:13252174-CGT-C **
hg19:Y:14527819-C-A hg38:Y:12416020-C-A **
hg19:Y:4807815-CT-C hg38:Y:4939774-CT-C 9×T**
hg19:Y:14272864-A-T hg38:Y:12152158-A-T **
hg19:Y:21775290-C-A hg38:Y:19613404-C-A **
hg19:Y:13487825-G-C hg38:Y:11332149-G-C **
hg19:Y:3609791-C-A hg38:Y:3741750-C-A **
hg38:Y:10987394-C-A **
hg19:Y:22658227-C-A hg38:Y:20496341-C-A **
hg38:Y:10889500-T-C **
hg38:Y:10889501-T-TC **
hg38:Y:10889506-TA-T **
hg19:Y:9702939-T-C hg38:Y:9865330-T-C IR3_Prx **
hg19:Y:7701876-C-A hg38:Y:7833835-C-A **
hg19:Y:5214479-C-A hg38:Y:5346438-C-A **
hg19:Y:9926874-C-A hg38:Y:10089265-C-A **
hg19:Y:24445472-C-A hg38:Y:22299325-C-A **
hg19:Y:7758138-G-A hg38:Y:7890097-G-A **
hg19:Y:13487810-G-T hg38:Y:11332134-G-T **
hg19:Y:17684524-T-A hg38:Y:15572644-T-A **
hg19:Y:17684526-A-T hg38:Y:15572646-A-T **
hg19:Y:17684533-C-A hg38:Y:15572653-C-A **
hg19:Y:7243175-C-A hg38:Y:7375134-C-A **
hg19:Y:14702055-C-A hg38:Y:12590121-C-A **
hg19:Y:4951821-C-A hg38:Y:5083780-C-A **
hg19:Y:17285218-C-A hg38:Y:15173338-C-A **
hg19:Y:14784752-C-T hg38:Y:12672822-C-T **
hg19:Y:16049919-C-A hg38:Y:13938039-C-A **
hg19:Y:18712802-C-T hg38:Y:16600922-C-T **
hg19:Y:2810469-G-T hg38:Y:2942428-G-T **
hg19:Y:7579936-G-T hg38:Y:7711895-G-T **
hg19:Y:19465806-C-A hg38:Y:17353926-C-A **
hg19:Y:21162765-C-A hg38:Y:19000879-C-A **
hg19:Y:14220469-C-A hg38:Y:12099763-C-A FT5189 **
hg38:Y:10763889-G-T **
hg19:Y:14966494-AT-A hg38:Y:12854569-AT-A **
hg19:Y:3367071-C-A hg38:Y:3499030-C-A **
hg38:Y:10763911-G-C **
hg19:Y:15380035-G-T hg38:Y:13268155-G-T **
hg19:Y:14700111-C-A hg38:Y:12588177-C-A **
hg19:Y:19007820-A-G hg38:Y:16895940-A-G **
hg19:Y:25246481-T-TG hg38:Y:23100334-T-TG P2_r1 **
hg19:Y:7142785-C-A hg38:Y:7274744-C-A **
hg19:Y:14289487-C-G hg38:Y:12168781-C-G **
hg19:Y:14324990-C-T hg38:Y:12204284-C-T **
hg19:Y:7378386-C-A hg38:Y:7510345-C-A **
hg19:Y:15202273-C-A hg38:Y:13090359-C-A **
hg19:Y:13809184-C-A hg38:Y:11688478-C-A DYZ17 **
hg19:Y:19337669-G-C hg38:Y:17225789-G-C **
hg19:Y:18232126-C-A hg38:Y:16120246-C-A **
hg19:Y:18758968-G-A hg38:Y:16647088-G-A **
hg19:Y:10022147-C-A hg38:Y:10184538-C-A **
hg38:Y:11017705-C-A **
hg19:Y:23512333-C-A hg38:Y:21350447-C-A **
hg19:Y:18728900-G-A hg38:Y:16617020-G-A Y134042 **
hg19:Y:15406795-C-A hg38:Y:13294915-C-A **
hg19:Y:8093464-C-A hg38:Y:8225423-C-A **
hg38:Y:10663469-C-A **
hg19:Y:28478879-C-A hg38:Y:26332732-C-A **
hg19:Y:24502328-C-A hg38:Y:22356181-C-A **
hg19:Y:2651942-C-A hg38:Y:2783901-C-A **
hg19:Y:17130054-C-A hg38:Y:15018174-C-A **
hg19:Y:23368693-C-A hg38:Y:21206807-C-A **
hg19:Y:22851460-T-C hg38:Y:20689574-T-C **
hg19:Y:22055526-C-A hg38:Y:19893640-C-A **
hg19:Y:7243190-C-A hg38:Y:7375149-C-A **
hg19:Y:4212743-C-A hg38:Y:4344702-C-A **
hg19:Y:23954979-C-A hg38:Y:21808832-C-A **
hg38:Y:10667002-T-A **
hg19:Y:13491198-C-A hg38:Y:11335522-C-A **
hg19:Y:16490961-C-A hg38:Y:14379081-C-A **
hg19:Y:28756901-C-A hg38:Y:26610754-C-A **
hg19:Y:17369270-C-A hg38:Y:15257390-C-A **
hg38:Y:10851089-C-A **
hg19:Y:13454482-C-A hg38:Y:11298806-C-A **
hg19:Y:2719119-C-CAG hg38:Y:2851078-C-CAG **
hg19:Y:2738797-C-A hg38:Y:2870756-C-A **
hg19:Y:2747834-C-T hg38:Y:2879793-C-T **
hg19:Y:2783642-GAAAAAAA-G hg38:Y:2915601-GAAAAAAA-G 15×A**
hg19:Y:2852557-T-G hg38:Y:2984516-T-G **
hg19:Y:2852559-C-A hg38:Y:2984518-C-A **
hg19:Y:3079471-T-A hg38:Y:3211430-T-A **
hg19:Y:3130995-T-C hg38:Y:3262954-T-C **
hg19:Y:3164477-C-A hg38:Y:3296436-C-A **
hg19:Y:3249530-C-A hg38:Y:3381489-C-A **
hg19:Y:3721240-T-C hg38:Y:3853199-T-C **
hg19:Y:3726315-C-A hg38:Y:3858274-C-A FT351684 **
hg19:Y:3836898-C-A hg38:Y:3968857-C-A **
hg19:Y:3990663-TCAAA-T hg38:Y:4122622-TCAAA-T **
hg19:Y:3999615-G-T hg38:Y:4131574-G-T **
hg19:Y:4123974-G-T hg38:Y:4255933-G-T **
hg19:Y:4178532-C-A hg38:Y:4310491-C-A **
hg19:Y:4278063-G-T hg38:Y:4410022-G-T **
hg19:Y:4478762-A-G hg38:Y:4610721-A-G FT11902 **
hg19:Y:4521936-T-C hg38:Y:4653895-T-C **
hg19:Y:4968425-A-C hg38:Y:5100384-A-C **
hg19:Y:4970073-T-C hg38:Y:5102032-T-C FTB70346 **
hg19:Y:5000310-C-A hg38:Y:5132269-C-A **
hg19:Y:5129084-G-A hg38:Y:5261043-G-A **
hg19:Y:5205169-T-A hg38:Y:5337128-T-A **
hg19:Y:5377076-C-A hg38:Y:5509035-C-A **
hg19:Y:5393365-A-G hg38:Y:5525324-A-G **
hg19:Y:5523604-T-A hg38:Y:5655563-T-A **
hg19:Y:5524242-G-A hg38:Y:5656201-G-A **
hg19:Y:5557446-A-C hg38:Y:5689405-A-C **
hg19:Y:5577304-A-T hg38:Y:5709263-A-T **
hg19:Y:5716389-C-A hg38:Y:5848348-C-A **
hg19:Y:6028979-C-A hg38:Y:6160938-C-A **
hg19:Y:6186080-A-G hg38:Y:6318039-A-G IR3_Dst **
hg19:Y:6359192-G-T hg38:Y:6491151-G-T **
hg19:Y:6435185-T-G hg38:Y:6567144-T-G **
hg19:Y:6615949-G-T hg38:Y:6747908-G-T **
hg19:Y:6646243-T-C hg38:Y:6778202-T-C **
hg19:Y:6651741-T-C hg38:Y:6783700-T-C **
hg19:Y:6771783-C-A hg38:Y:6903742-C-A **
hg19:Y:6920651-C-A hg38:Y:7052610-C-A **
hg19:Y:6983691-T-C hg38:Y:7115650-T-C **
hg19:Y:6984843-C-A hg38:Y:7116802-C-A **
hg19:Y:7020540-C-A hg38:Y:7152499-C-A **
hg19:Y:7039119-C-A hg38:Y:7171078-C-A **
hg19:Y:7116877-G-T hg38:Y:7248836-G-T **
hg19:Y:7136974-A-G hg38:Y:7268933-A-G **
hg19:Y:7166553-CT-C hg38:Y:7298512-CT-C **
hg19:Y:7185565-C-A hg38:Y:7317524-C-A **
hg19:Y:7199436-G-A hg38:Y:7331395-G-A **
hg19:Y:7247538-A-G hg38:Y:7379497-A-G **
hg19:Y:7247540-A-G hg38:Y:7379499-A-G **
hg19:Y:7258005-C-A hg38:Y:7389964-C-A **
hg19:Y:7285066-A-C hg38:Y:7417025-A-C **
hg19:Y:7353226-C-A hg38:Y:7485185-C-A **
hg19:Y:7423059-A-C hg38:Y:7555018-A-C **
hg19:Y:7451270-A-AT hg38:Y:7583229-A-AT IR1_L 9×T**
hg19:Y:7733358-C-A hg38:Y:7865317-C-A **
hg19:Y:7861707-A-G hg38:Y:7993666-A-G **
hg19:Y:8008142-C-A hg38:Y:8140101-C-A **
hg19:Y:8067431-C-A hg38:Y:8199390-C-A **
hg19:Y:8077335-G-A hg38:Y:8209294-G-A **
hg19:Y:8119276-C-G hg38:Y:8251235-C-G **
hg19:Y:8154044-C-A hg38:Y:8286003-C-A **
hg19:Y:8371816-C-A hg38:Y:8503775-C-A **
hg19:Y:8423768-C-A hg38:Y:8555727-C-A **
hg19:Y:8636055-G-T hg38:Y:8768014-G-T **
hg19:Y:8674238-A-T hg38:Y:8806197-A-T **
hg19:Y:8731005-G-T hg38:Y:8862964-G-T **
hg19:Y:8753774-CT-C hg38:Y:8885733-CT-C **
hg19:Y:8761304-C-A hg38:Y:8893263-C-A **
hg19:Y:8799814-C-A hg38:Y:8931773-C-A **
hg19:Y:9077152-T-C hg38:Y:9239543-T-C **
hg19:Y:9077155-G-C hg38:Y:9239546-G-C **
hg19:Y:9166870-C-A hg38:Y:9329261-C-A **
hg19:Y:9205302-C-A hg38:Y:9367693-C-A **
hg19:Y:9446113-A-T hg38:Y:9608504-A-T **
hg19:Y:9491933-G-T hg38:Y:9654324-G-T **
hg19:Y:9921886-T-G hg38:Y:10084277-T-G **
hg19:Y:9921926-A-G hg38:Y:10084317-A-G **
hg19:Y:9925301-A-G hg38:Y:10087692-A-G **
hg19:Y:9927223-C-G hg38:Y:10089614-C-G **
hg19:Y:9927224-C-A hg38:Y:10089615-C-A **
hg19:Y:9937652-G-T hg38:Y:10100043-G-T **
hg19:Y:9941456-C-A hg38:Y:10103847-C-A **
hg19:Y:9955394-C-T hg38:Y:10117785-C-T **
hg19:Y:9961435-T-G hg38:Y:10123826-T-G **
hg19:Y:10032271-C-A hg38:Y:10194662-C-A **
hg38:Y:10657293-T-A **
hg38:Y:10669454-C-CA **
hg38:Y:10669456-T-TAGGGTTGAA **
hg38:Y:10863296-C-A **
hg38:Y:10877984-C-A **
hg38:Y:10971297-C-T **
hg38:Y:10987398-C-A **
hg38:Y:11035292-C-A **
hg19:Y:13215554-C-A hg38:Y:11059878-C-A **
hg19:Y:13291030-C-A hg38:Y:11135354-C-A **
hg19:Y:13310309-C-A hg38:Y:11154633-C-A BY210128 **
hg19:Y:13482362-C-A hg38:Y:11326686-C-A **
hg19:Y:13494086-G-T hg38:Y:11338410-G-T **
hg19:Y:13550785-A-G hg38:Y:11395109-A-G **
hg19:Y:13572805-C-A hg38:Y:11417129-C-A **
hg19:Y:13597545-C-A hg38:Y:11441869-C-A **
hg19:Y:13641124-T-C hg38:Y:11485448-T-C **
hg19:Y:13641198-TA-T hg38:Y:11485522-TA-T **
hg19:Y:13725944-C-A hg38:Y:11570268-C-A DYZ17 **
hg19:Y:13725954-T-A hg38:Y:11570278-T-A DYZ17 **
hg38:Y:11649244-C-A FT450112 DYZ17 **
hg19:Y:13819413-C-A hg38:Y:11698707-C-A DYZ17 **
hg19:Y:13841454-G-A hg38:Y:11720748-G-A DYZ17 **
hg19:Y:13841458-T-A hg38:Y:11720752-T-A DYZ17 **
hg19:Y:13870835-T-A hg38:Y:11750129-T-A **
hg19:Y:13871365-G-T hg38:Y:11750659-G-T **
hg19:Y:13884876-C-T hg38:Y:11764170-C-T **
hg19:Y:13926687-C-A hg38:Y:11805981-C-A **
hg19:Y:13937445-C-A hg38:Y:11816739-C-A **
hg19:Y:13961740-C-A hg38:Y:11841034-C-A FT123939 **
hg19:Y:13999106-C-A hg38:Y:11878400-C-A **
hg19:Y:14022060-A-T hg38:Y:11901354-A-T **
hg19:Y:14059986-C-T hg38:Y:11939280-C-T ZS5886 **
hg19:Y:14089800-T-C hg38:Y:11969094-T-C **
hg19:Y:14092592-CACCACT-C hg38:Y:11971886-CACCACT-C **
hg19:Y:14179728-G-A hg38:Y:12059022-G-A **
hg19:Y:14238992-C-A hg38:Y:12118286-C-A **
hg19:Y:14250487-CA-C hg38:Y:12129781-CA-C **
hg19:Y:14253169-G-T hg38:Y:12132463-G-T **
hg19:Y:14295214-A-G hg38:Y:12174508-A-G **
hg19:Y:14314312-G-A hg38:Y:12193606-G-A **
hg19:Y:14369254-A-T hg38:Y:12248550-A-T **
hg19:Y:14389934-T-C hg38:Y:12269230-T-C **
hg19:Y:14488621-A-G hg38:Y:12367890-A-G **
hg19:Y:14518395-G-A hg38:Y:12406596-G-A **
hg19:Y:14533471-C-A hg38:Y:12421672-C-A **
hg19:Y:14538059-T-C hg38:Y:12426260-T-C **
hg19:Y:14540728-G-T hg38:Y:12428929-G-T **
hg19:Y:14605104-T-C hg38:Y:12493306-T-C **
hg19:Y:14639219-C-A hg38:Y:12527288-C-A **
hg19:Y:14700253-C-T hg38:Y:12588319-C-T **
hg19:Y:14735338-C-A hg38:Y:12623406-C-A **
hg19:Y:14735354-C-A hg38:Y:12623422-C-A **
hg19:Y:14761026-C-G hg38:Y:12649095-C-G **
hg19:Y:14779456-G-C hg38:Y:12667526-G-C FT363952 **
hg19:Y:14822815-T-C hg38:Y:12710882-T-C **
hg19:Y:14858728-C-A hg38:Y:12746794-C-A **
hg19:Y:14965211-T-G hg38:Y:12853286-T-G **
hg19:Y:14966475-A-C hg38:Y:12854550-A-C **
hg19:Y:14966476-T-C hg38:Y:12854551-T-C **
hg19:Y:14966489-A-G hg38:Y:12854564-A-G **
hg19:Y:15049309-C-A hg38:Y:12937400-C-A **
hg19:Y:15061643-C-A hg38:Y:12949735-C-A **
hg19:Y:15065032-C-A hg38:Y:12953124-C-A **
hg19:Y:15268878-A-C hg38:Y:13156967-A-C **
hg19:Y:15270905-C-A hg38:Y:13158994-C-A **
hg19:Y:15280622-C-A hg38:Y:13168721-C-A **
hg19:Y:15323581-T-A hg38:Y:13211699-T-A **
hg19:Y:15342535-C-A hg38:Y:13230654-C-A **
hg19:Y:15424304-C-T hg38:Y:13312424-C-T **
hg19:Y:15496375-T-A hg38:Y:13384495-T-A **
hg19:Y:15556635-A-G hg38:Y:13444755-A-G FTA50157 **
hg19:Y:15579954-A-G hg38:Y:13468074-A-G **
hg19:Y:15608151-C-A hg38:Y:13496271-C-A **
hg19:Y:15608194-A-G hg38:Y:13496314-A-G **
hg19:Y:15648600-C-A hg38:Y:13536720-C-A **
hg19:Y:15687616-A-C hg38:Y:13575736-A-C **
hg19:Y:15741813-C-A hg38:Y:13629933-C-A **
hg19:Y:15776724-T-C hg38:Y:13664844-T-C **
hg19:Y:15901347-C-G hg38:Y:13789467-C-G **
hg19:Y:15967608-C-A hg38:Y:13855728-C-A **
hg19:Y:16044273-T-A hg38:Y:13932393-T-A **
hg19:Y:16044955-A-G hg38:Y:13933075-A-G **
hg19:Y:16240172-C-A hg38:Y:14128292-C-A **
hg19:Y:16259035-A-C hg38:Y:14147155-A-C **
hg19:Y:16261009-CTATT-C hg38:Y:14149129-CTATT-C **
hg19:Y:16351938-G-A hg38:Y:14240058-G-A **
hg19:Y:16554877-C-A hg38:Y:14442997-C-A **
hg19:Y:16666211-C-A hg38:Y:14554331-C-A **
hg19:Y:16705085-AAAG-A hg38:Y:14593205-AAAG-A **
hg19:Y:16717274-A-G hg38:Y:14605394-A-G **
hg19:Y:16739505-C-G hg38:Y:14627625-C-G **
hg19:Y:17004615-T-A hg38:Y:14892735-T-A **
hg19:Y:17014249-C-A hg38:Y:14902369-C-A **
hg19:Y:17038480-C-A hg38:Y:14926600-C-A **
hg19:Y:17052077-C-A hg38:Y:14940197-C-A **
hg19:Y:17139714-C-A hg38:Y:15027834-C-A **
hg19:Y:17181501-T-C hg38:Y:15069621-T-C **
hg19:Y:17323565-A-G hg38:Y:15211685-A-G **
hg19:Y:17327379-C-A hg38:Y:15215499-C-A **
hg19:Y:17377575-G-T hg38:Y:15265695-G-T **
hg19:Y:17415353-C-G hg38:Y:15303473-C-G **
hg19:Y:17465228-C-A hg38:Y:15353348-C-A **
hg19:Y:17503655-G-C hg38:Y:15391775-G-C **
hg19:Y:17552052-C-A hg38:Y:15440172-C-A **
hg19:Y:17560633-C-A hg38:Y:15448753-C-A FGC56073 **
hg19:Y:17561261-T-A hg38:Y:15449381-T-A **
hg19:Y:17588518-C-A hg38:Y:15476638-C-A **
hg19:Y:17620965-C-A hg38:Y:15509085-C-A **
hg19:Y:17650225-T-G hg38:Y:15538345-T-G **
hg19:Y:17650262-C-A hg38:Y:15538382-C-A **
hg19:Y:17684499-A-G hg38:Y:15572619-A-G **
hg19:Y:17684539-T-G hg38:Y:15572659-T-G **
hg19:Y:17684544-G-GT hg38:Y:15572664-G-GT **
hg19:Y:17684554-A-G hg38:Y:15572674-A-G **
hg19:Y:17684556-G-T hg38:Y:15572676-G-T **
hg19:Y:17685663-G-A hg38:Y:15573783-G-A **
hg19:Y:17739992-CT-C hg38:Y:15628112-CT-C **
hg19:Y:17751952-C-A hg38:Y:15640072-C-A **
hg19:Y:17770543-C-A hg38:Y:15658663-C-A **
hg19:Y:17812205-T-A hg38:Y:15700325-T-A **
hg19:Y:17894401-C-A hg38:Y:15782521-C-A **
hg19:Y:17896270-C-A hg38:Y:15784390-C-A **
hg19:Y:17923683-G-T hg38:Y:15811803-G-T **
hg19:Y:17961054-T-C hg38:Y:15849174-T-C **
hg19:Y:18108666-G-T hg38:Y:15996786-G-T **
hg19:Y:18391813-C-A hg38:Y:16279933-C-A P6_Gap **
hg19:Y:18406508-T-A hg38:Y:16294628-T-A P6_Gap **
hg19:Y:18580228-T-C hg38:Y:16468348-T-C **
hg19:Y:18605027-A-C hg38:Y:16493147-A-C **
hg19:Y:18628301-C-A hg38:Y:16516421-C-A FT272488 **
hg19:Y:18661443-C-A hg38:Y:16549563-C-A **
hg19:Y:18712823-CG-C hg38:Y:16600943-CG-C **
hg19:Y:18712864-A-G hg38:Y:16600984-A-G **
hg19:Y:18745849-T-A hg38:Y:16633969-T-A **
hg19:Y:18749270-C-A hg38:Y:16637390-C-A **
hg19:Y:18758964-G-C hg38:Y:16647084-G-C **
hg19:Y:18758966-C-G hg38:Y:16647086-C-G **
hg19:Y:18906224-C-A hg38:Y:16794344-C-A **
hg19:Y:18928630-A-C hg38:Y:16816750-A-C **
hg19:Y:18966177-T-C hg38:Y:16854297-T-C **
hg19:Y:19031393-T-C hg38:Y:16919513-T-C **
hg19:Y:19031403-T-C hg38:Y:16919523-T-C **
hg19:Y:19056320-T-G hg38:Y:16944440-T-G **
hg19:Y:19295495-A-G hg38:Y:17183615-A-G **
hg19:Y:19391313-G-A hg38:Y:17279433-G-A **
hg19:Y:19393262-C-A hg38:Y:17281382-C-A **
hg19:Y:19431563-C-A hg38:Y:17319683-C-A **
hg19:Y:19461169-CT-C hg38:Y:17349289-CT-C **
hg19:Y:19530363-G-A hg38:Y:17418483-G-A **
hg19:Y:19539623-A-C hg38:Y:17427743-A-C **
hg19:Y:19547682-T-C hg38:Y:17435802-T-C **
hg19:Y:19754846-C-A hg38:Y:17642966-C-A P5_Prx **
hg19:Y:19754852-G-C hg38:Y:17642972-G-C P5_Prx **
hg19:Y:19754976-C-A hg38:Y:17643096-C-A P5_Prx **
hg19:Y:20108220-A-AG hg38:Y:17996340-A-AG P5_Dst **
hg19:Y:20340265-A-T hg38:Y:18178379-A-T P5_Dst **
hg19:Y:20424811-A-G hg38:Y:18262925-A-G P5_Dst **
hg19:Y:20497573-T-C hg38:Y:18335687-T-C P5_Dst **
hg19:Y:20510923-T-C hg38:Y:18349037-T-C P5_Dst **
hg19:Y:20839520-C-A hg38:Y:18677634-C-A P4_Gap **
hg19:Y:21100816-C-A hg38:Y:18938930-C-A **
hg19:Y:21221326-A-G hg38:Y:19059440-A-G **
hg19:Y:21278898-C-A hg38:Y:19117012-C-A **
hg19:Y:21283344-T-C hg38:Y:19121458-T-C **
hg19:Y:21334518-T-G hg38:Y:19172632-T-G **
hg19:Y:21334548-C-A hg38:Y:19172662-C-A FT284142 **
hg19:Y:21361845-C-A hg38:Y:19199959-C-A **
hg19:Y:21438434-C-A hg38:Y:19276548-C-A **
hg19:Y:21604186-C-A hg38:Y:19442300-C-A **
hg19:Y:21616118-G-A hg38:Y:19454232-G-A **
hg19:Y:21885821-C-A hg38:Y:19723935-C-A **
hg19:Y:21891100-C-A hg38:Y:19729214-C-A 9×A**
hg19:Y:21909651-T-C hg38:Y:19747765-T-C **
hg19:Y:21909669-C-A hg38:Y:19747783-C-A **
hg19:Y:21919308-TG-T hg38:Y:19757422-TG-T **
hg19:Y:21920488-AGTAGG-A hg38:Y:19758602-AGTAGG-A **
hg19:Y:22008414-A-C hg38:Y:19846528-A-C **
hg19:Y:22167284-C-A hg38:Y:20005398-C-A **
hg19:Y:22171228-G-C hg38:Y:20009342-G-C **
hg19:Y:22334839-C-A hg38:Y:20172953-C-A DYZ19 **
hg19:Y:22518410-C-G hg38:Y:20356524-C-G **
hg19:Y:22520673-C-A hg38:Y:20358787-C-A **
hg19:Y:22520707-T-A hg38:Y:20358821-T-A **
hg19:Y:22542717-C-T hg38:Y:20380831-C-T **
hg19:Y:22720539-C-A hg38:Y:20558653-C-A **
hg19:Y:22801622-C-A hg38:Y:20639736-C-A **
hg19:Y:22841290-C-A hg38:Y:20679404-C-A **
hg19:Y:22851462-C-A hg38:Y:20689576-C-A **
hg19:Y:22956086-C-A hg38:Y:20794200-C-A **
hg19:Y:22956121-C-A hg38:Y:20794235-C-A **
hg19:Y:22963829-C-A hg38:Y:20801943-C-A **
hg19:Y:23010073-G-T hg38:Y:20848187-G-T **
hg19:Y:23035793-C-A hg38:Y:20873907-C-A **
hg19:Y:23082047-T-C hg38:Y:20920161-T-C **
hg19:Y:23198914-TGATA-T hg38:Y:21037028-TGATA-T **
hg19:Y:23255916-C-A hg38:Y:21094030-C-A **
hg19:Y:23315845-A-T hg38:Y:21153959-A-T **
hg19:Y:23339768-T-A hg38:Y:21177882-T-A **
hg19:Y:23459578-G-T hg38:Y:21297692-G-T **
hg19:Y:23495561-G-T hg38:Y:21333675-G-T **
hg19:Y:23501794-G-A hg38:Y:21339908-G-A **
hg19:Y:23523614-G-C hg38:Y:21361728-G-C **
hg19:Y:23807563-A-G hg38:Y:21645677-A-G **
hg19:Y:23808093-G-T hg38:Y:21646207-G-T **
hg19:Y:23808703-C-T hg38:Y:21646817-C-T **
hg19:Y:23831296-T-C hg38:Y:21669410-T-C **
hg38:Y:21753050-C-A **
hg19:Y:23953248-G-T hg38:Y:21807101-G-T **
hg19:Y:24303156-C-A hg38:Y:22157009-C-A P3_t1 **
hg19:Y:24406263-G-T hg38:Y:22260116-G-T **
hg19:Y:24407770-C-A hg38:Y:22261623-C-A **
hg19:Y:24415766-A-ACTGTTT hg38:Y:22269619-A-ACTGTTT **
hg19:Y:24415887-T-A hg38:Y:22269740-T-A **
hg19:Y:24468908-C-A hg38:Y:22322761-C-A **
hg19:Y:24878461-G-T hg38:Y:22732314-G-T g1 **
hg19:Y:25096662-A-G hg38:Y:22950515-A-G g1 **
hg19:Y:25862075-T-A hg38:Y:23715928-T-A P1_Y1 **
hg19:Y:26001414-T-A hg38:Y:23855267-T-A P1_Y1 **
hg19:Y:26100896-G-C hg38:Y:23954749-G-C P1_Y1 **
hg19:Y:26105963-C-A hg38:Y:23959816-C-A P1_Y1 **
hg19:Y:26105971-C-A hg38:Y:23959824-C-A P1_Y1 **
hg19:Y:26391568-A-G hg38:Y:24245421-A-G P1_Y1 **
hg19:Y:28099239-A-AT hg38:Y:25953092-A-AT P1_Y2 8×T**
hg19:Y:28478938-T-C hg38:Y:26332791-T-C **
hg19:Y:28530804-A-G hg38:Y:26384657-A-G **
hg19:Y:28608637-A-G hg38:Y:26462490-A-G **
hg19:Y:28619841-T-C hg38:Y:26473694-T-C **
hg19:Y:28687477-C-A hg38:Y:26541330-C-A **
hg19:Y:28703548-C-A hg38:Y:26557401-C-A **
hg38:Y:56837698-G-T **
hg19:Y:13657030-T-A hg38:Y:11501354-T-A DYZ17 ***
hg19:Y:19947284-T-C hg38:Y:17835404-T-C P5_Prx ***
hg19:Y:18354311-G-A hg38:Y:16242431-G-A P6_Prx ***
hg19:Y:20206684-GA-G hg38:Y:18044798-GA-G P5_Dst 9×A***
hg19:Y:13657029-C-A hg38:Y:11501353-C-A DYZ17 ***
hg19:Y:13657035-C-T hg38:Y:11501359-C-T DYZ17 ***
hg19:Y:27791860-T-G hg38:Y:25645713-T-G P1_Y2 ***
hg19:Y:13466795-G-T hg38:Y:11311119-G-T ***
hg19:Y:22360127-A-T hg38:Y:20198241-A-T DYZ19 ***
hg19:Y:13656988-T-A hg38:Y:11501312-T-A DYZ17 ***
hg19:Y:10007103-C-T hg38:Y:10169494-C-T ***
hg19:Y:13712658-G-A hg38:Y:11556982-G-A DYZ17 ***
hg19:Y:13712667-T-TC hg38:Y:11556991-T-TC DYZ17 ***
hg19:Y:18354292-A-G hg38:Y:16242412-A-G P6_Prx ***
hg19:Y:13836403-C-A hg38:Y:11715697-C-A DYZ17 ***
hg19:Y:24317741-T-A hg38:Y:22171594-T-A P3_t1 ***
hg19:Y:13857537-AATCAG-A hg38:Y:11736831-AATCAG-A DYZ17 ***
hg19:Y:25953309-C-A hg38:Y:23807162-C-A P1_Y1 ***
hg19:Y:25953336-A-T hg38:Y:23807189-A-T P1_Y1 ***
hg19:Y:25953337-C-T hg38:Y:23807190-C-T P1_Y1 ***
hg19:Y:25953343-G-C hg38:Y:23807196-G-C P1_Y1 ***
hg19:Y:25953344-G-A hg38:Y:23807197-G-A P1_Y1 ***
hg19:Y:25953354-A-G hg38:Y:23807207-A-G P1_Y1 ***
hg19:Y:25953357-C-A hg38:Y:23807210-C-A P1_Y1 ***
hg19:Y:18951813-C-A hg38:Y:16839933-C-A ***
hg38:Y2:13461-C-T ***
hg19:Y:15677505-CAAAA-C hg38:Y:13565625-CAAAA-C 16×A***
hg19:Y:19337658-G-T hg38:Y:17225778-G-T ***
hg19:Y:24751188-G-GTT hg38:Y:22605041-G-GTT P3_b2 15×T***
hg19:Y:7990903-C-A hg38:Y:8122862-C-A ***
hg19:Y:15336968-C-A hg38:Y:13225086-C-A ***
hg19:Y:15340418-C-T hg38:Y:13228537-C-T ***
hg38:Y:10785581-C-A ***
hg19:Y:9503930-G-T hg38:Y:9666321-G-T ***
hg19:Y:16521009-T-A hg38:Y:14409129-T-A ***
hg19:Y:14450542-C-A hg38:Y:12329815-C-A ***
hg19:Y:8221347-C-A hg38:Y:8353306-C-A ***
hg19:Y:13196097-C-A hg38:Y:11040421-C-A ***
hg19:Y:13468687-C-A hg38:Y:11313011-C-A ***
hg19:Y:9936182-C-A hg38:Y:10098573-C-A ***
hg19:Y:17355468-C-A hg38:Y:15243588-C-A ***
hg19:Y:2810388-TTG-T hg38:Y:2942347-TTG-T ***
hg38:Y:10845650-C-T ***
hg38:Y:10776522-C-CGTGTTA ***
hg19:Y:5212466-C-A hg38:Y:5344425-C-A ***
hg19:Y:23818295-C-A hg38:Y:21656409-C-A ***
hg19:Y:18740774-C-A hg38:Y:16628894-C-A ***
hg19:Y:16818834-C-A hg38:Y:14706954-C-A ***
hg19:Y:4063053-C-A hg38:Y:4195012-C-A ***
hg19:Y:7207458-T-C hg38:Y:7339417-T-C ***
hg19:Y:7222908-C-A hg38:Y:7354867-C-A ***
hg19:Y:7334258-C-A hg38:Y:7466217-C-A ***
hg19:Y:7564402-C-A hg38:Y:7696361-C-A ***
hg19:Y:8027891-C-A hg38:Y:8159850-C-A ***
hg19:Y:8675005-A-G hg38:Y:8806964-A-G ***
hg19:Y:8810726-C-A hg38:Y:8942685-C-A ***
hg19:Y:8875623-A-G hg38:Y:9007582-A-G ***
hg19:Y:8893708-A-G hg38:Y:9025667-A-G ***
hg19:Y:9873364-C-A hg38:Y:10035755-C-A ***
hg19:Y:9960949-C-A hg38:Y:10123340-C-A ***
hg19:Y:10037543-G-T hg38:Y:10199934-G-T ***
hg19:Y:13290295-A-G hg38:Y:11134619-A-G ***
hg19:Y:13473361-C-A hg38:Y:11317685-C-A ***
hg19:Y:13653076-TG-T hg38:Y:11497400-TG-T DYZ17 ***
hg38:Y:11643766-ATGG-A,TTGA DYZ17 ***
hg19:Y:13857555-G-GGGCTC hg38:Y:11736849-G-GGGCTC DYZ17 ***
hg19:Y:14046458-C-A hg38:Y:11925752-C-A ***
hg19:Y:14286804-TTTG-G,TTTT hg38:Y:12166098-TTTG-G,TTTT ***
hg19:Y:14590067-G-T hg38:Y:12478267-G-T ***
hg19:Y:15906506-C-A hg38:Y:13794626-C-A ***
hg19:Y:16049851-C-A hg38:Y:13937971-C-A ***
hg19:Y:16293130-C-A hg38:Y:14181250-C-A ***
hg19:Y:16347225-C-A hg38:Y:14235345-C-A ***
hg19:Y:16492836-G-T hg38:Y:14380956-G-T ***
hg19:Y:17103249-C-A hg38:Y:14991369-C-A ***
hg19:Y:17142014-C-A hg38:Y:15030134-C-A ***
hg19:Y:17206453-C-A hg38:Y:15094573-C-A ***
hg19:Y:17211056-G-A hg38:Y:15099176-G-A ***
hg19:Y:17375884-G-T hg38:Y:15264004-G-T ***
hg19:Y:17589957-C-A hg38:Y:15478077-C-A ***
hg19:Y:17688417-C-A hg38:Y:15576537-C-A ***
hg19:Y:18177114-C-A hg38:Y:16065234-C-A ***
hg19:Y:18568022-C-A hg38:Y:16456142-C-A ***
hg19:Y:19337655-TG-T,TA hg38:Y:17225775-TG-T,TA ***
hg19:Y:19418535-A-G hg38:Y:17306655-A-G ***
hg19:Y:21183633-C-A hg38:Y:19021747-C-A ***
hg19:Y:21717831-G-T hg38:Y:19555945-G-T ***
hg19:Y:22033588-C-A hg38:Y:19871702-C-A ***
hg19:Y:22202525-T-C hg38:Y:20040639-T-C ***
hg19:Y:23114071-T-C hg38:Y:20952185-T-C ***
hg19:Y:23983549-A-G hg38:Y:21837402-A-G ***
hg19:Y:28536057-C-A hg38:Y:26389910-C-A ***
hg19:Y:28762784-C-A hg38:Y:26616637-C-A ***
hg38:Y:56832400-A-T ***
hg38:Y:56833308-TGCCAT-CTCTAC,T ***
hg38:Y2:13454-T-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.