Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF63/S522 > CTS6919 > BY7794

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
415378
BigY2
415378
19961670-G-A 17849790-G-A P5_Prx ***A*
16119955-A-G 14008075-A-G P8_Prx ***A*
25955122-T-C 23808975-T-C P1_Y1 ***A*
23072572-A-AAAAAC 20910686-A-AAAAAC 6×AAAAC+*
5818221-C-A 5950180-C-A BY58859 **+
6632160-G-A 6764119-G-A BY60425 YY++
6959556-AAAAG-A 7091515-AAAAG-A ++
7329987-G-T 7461946-G-T BY64609 YY++
8020891-T-G 8152850-T-G BY69410 YY++
8141664-G-A 8273623-G-A BY70255 YY++
8366019-G-T 8497978-G-T FT179331 YY++
10019369-C-A 10181760-C-A BY53988 Y***+
14223429-A-G 12102723-A-G BY94047 YY++
14285562-G-A 12164856-G-A BY94568 YY++
14322010-A-G 12201304-A-G BY94845 YY++
15508353-C-T 13396473-C-T BY102068 YY++
16643743-A-G 14531863-A-G BY109185 YY++
16791594-G-GTGA 14679714-G-GTGA ++
17239649-A-G 15127769-A-G BY113222 YY++
17443268-A-G 15331388-A-G BY114838 YY++
17456709-A-G 15344829-A-G BY114913 YY++
17578752-C-T 15466872-C-T Z38374 YY++
18128175-T-G 16016295-T-G BY120308 YY++
18421164-T-G 16309284-T-G BY121882 P6_Gap ++
21259720-T-C 19097834-T-C BY131519 YY++
21263895-T-C 19102009-T-C BY131565 YY++
21590774-T-C 19428888-T-C BY134024 YY++
22516426-A-T 20354540-A-T BY138623 Y++
22633143-T-C 20471257-T-C BY139665 Y++
23033705-G-A 20871819-G-A BY142460 YY++
23806089-G-A 21644203-G-A BY147845 Y++
23806218-G-T 21644332-G-T BY147848 Y++
23975604-G-T 21829457-G-T BY148927 Y++
9046164-T-TG 9208555-T-TG +
22317439-A-G 20155553-A-G DYZ19 ****
8465930-GTATT-G 8597889-GTATT-G **
15870715-G-C 13758835-G-C Y5535 FGC32242 **
21923975-G-A 19762089-G-A Y29364 **
9183719-T-C 9346110-T-C *****
22296092-C-T 20134206-C-T DYZ19 **
22428523-G-T 20266637-G-T DYZ19 **
28804865-G-A 26658718-G-A BY188756 *****
13458826-C-A 11303150-C-A **
23512160-C-A 21350274-C-A **
14844400-C-A 12732466-C-A **
13489399-G-A 11333723-G-A **
13489416-G-C 11333740-G-C **
22637682-A-G 20475796-A-G **
22914070-C-A 20752184-C-A **
16568095-C-A 14456215-C-A **
9958851-C-A 10121242-C-A **
13643920-C-A 11488244-C-A **
13489476-G-T 11333800-G-T **
14517348-C-A 12405549-C-A **
10657251-A-C **
6375703-G-T 6507662-G-T **
15490641-C-A 13378761-C-A **
13330304-C-A 11174628-C-A **
16232210-C-A 14120330-C-A **
16197334-C-A 14085454-C-A **
5459184-C-A 5591143-C-A **
18848574-G-T 16736694-G-T FTA28903 **
56827512-C-A **
17707375-TCAA-T 15595495-TCAA-T **
18629927-C-A 16518047-C-A **
3092038-C-A 3223997-C-A **
17589080-C-A 15477200-C-A **
6293371-TTG-T 6425330-TTG-T IR3_Dst **
16243167-C-A 14131287-C-A **
9423095-C-A 9585486-C-A **
7116382-C-A 7248341-C-A **
16552947-C-A 14441067-C-A **
56830860-C-A **
22637686-G-A 20475800-G-A **
22637690-T-G 20475804-T-G **
22637694-A-G 20475808-A-G **
28081887-C-CAA 25935740-C-CAA P1_Y2 **
10900833-C-A **
22653268-C-A 20491382-C-A **
14363436-C-A 12242731-C-A **
7108615-G-A 7240574-G-A 9×TA**
18927402-C-A 16815522-C-A **
9440212-C-A 9602603-C-A **
18782044-C-A 16670164-C-A **
6490918-C-A 6622877-C-A **
22864433-C-T 20702547-C-T **
15687648-C-A 13575768-C-A **
11643802-T-A DYZ17 **
22289376-C-A 20127490-C-A DYZ19 **
20614944-C-A 18453058-C-A P4_Prx **
17159121-T-C 15047241-T-C **
28548556-C-A 26402409-C-A **
21110078-C-A 18948192-C-A **
22864407-G-A 20702521-G-A **
6147480-C-T 6279439-C-T IR3_Dst **
26243447-AAG-A 24097300-AAG-A P1_Y1 **
4241651-C-A 4373610-C-A **
3559735-C-A 3691694-C-A **
8215023-C-A 8346982-C-A **
56828338-C-G **
14764464-G-C 12652533-G-C **
17074042-C-A 14962162-C-A **
8284534-C-A 8416493-C-A **
19373885-A-G 17262005-A-G **
5200345-G-T 5332304-G-T **
14103030-C-A 11982324-C-A **
6780786-G-A 6912745-G-A **
21318336-G-T 19156450-G-T **
10968503-C-A **
6765542-C-A 6897501-C-A **
8008893-C-A 8140852-C-A **
16941495-C-A 14829615-C-A **
21239060-C-A 19077174-C-A **
3833649-T-C 3965608-T-C **
13626794-C-A 11471118-C-A **
15080194-C-A 12968284-C-A **
6913748-C-A 7045707-C-A **
4872409-C-A 5004368-C-A **
23741938-C-A 21580052-C-A **
18824537-C-A 16712657-C-A **
19201372-C-A 17089492-C-A **
2738707-C-G 2870666-C-G **
2760066-C-A 2892025-C-A **
2793742-C-T 2925701-C-T **
2795717-C-A 2927676-C-A **
2797211-G-A 2929170-G-A **
3122517-C-A 3254476-C-A **
3992888-C-T 4124847-C-T **
4038224-G-T 4170183-G-T **
4261849-T-C 4393808-T-C **
4447323-A-G 4579282-A-G **
4470963-C-A 4602922-C-A **
4484880-C-A 4616839-C-A FGC56910 **
4630453-G-T 4762412-G-T **
4907368-G-T 5039327-G-T **
5134091-A-AG 5266050-A-AG **
5179777-C-A 5311736-C-A **
5230879-G-T 5362838-G-T **
5789894-C-A 5921853-C-A **
5796691-G-T 5928650-G-T **
5957026-C-T 6088985-C-T **
6037890-A-C 6169849-A-C **
6392660-A-G 6524619-A-G **
6464863-G-T 6596822-G-T **
6576635-T-G 6708594-T-G **
6756906-CT-C 6888865-CT-C **
6779855-G-A 6911814-G-A **
6780802-T-C 6912761-T-C **
6780803-G-A 6912762-G-A **
6840889-C-A 6972848-C-A **
6848046-C-A 6980005-C-A **
6915941-C-A 7047900-C-A **
6949323-T-C 7081282-T-C **
6983589-CTGTGTGTG-C 7115548-CTGTGTGTG-C 20×TG**
6994507-G-A 7126466-G-A **
7018113-C-A 7150072-C-A **
7078199-C-T 7210158-C-T **
7078223-G-T 7210182-G-T **
7103279-C-A 7235238-C-A **
7127201-TACA-T 7259160-TACA-T **
7172690-A-T 7304649-A-T **
7172712-A-T 7304671-A-T **
7238246-C-T 7370205-C-T **
7239824-C-A 7371783-C-A **
7240420-ATTAC-A 7372379-ATTAC-A **
7310483-T-C 7442442-T-C **
7311117-A-G 7443076-A-G **
7335029-C-A 7466988-C-A **
7541017-T-C 7672976-T-C **
7579141-C-A 7711100-C-A **
7690218-T-C 7822177-T-C **
7705553-G-T 7837512-G-T **
7735080-A-T 7867039-A-T **
7777173-C-A 7909132-C-A **
7801194-T-G 7933153-T-G FT83412 **
7825320-C-A 7957279-C-A **
7825383-G-C 7957342-G-C **
7958389-C-A 8090348-C-A **
8228457-C-A 8360416-C-A **
8232225-C-A 8364184-C-A **
8353084-C-A 8485043-C-A **
8441147-C-A 8573106-C-A **
8456600-G-A 8588559-G-A **
8585591-G-A 8717550-G-A **
8748273-C-A 8880232-C-A **
9030076-G-T 9192467-G-T **
9075361-T-A 9237752-T-A **
9075369-A-C 9237760-A-C **
9075377-T-C 9237768-T-C **
9165326-C-A 9327717-C-A **
9221717-C-CTG 9384108-C-CTG **
9460891-T-G 9623282-T-G **
9461450-C-A 9623841-C-A **
9464332-C-A 9626723-C-A **
9478191-G-T 9640582-G-T **
9512032-C-T 9674423-C-T **
9515585-G-A 9677976-G-A **
9642480-C-A 9804871-C-A IR3_Prx **
9810916-G-A 9973307-G-A **
9976521-G-T 10138912-G-T **
9983915-C-A 10146306-C-A **
10033652-C-A 10196043-C-A **
10825632-C-A **
10956594-C-CATAACGTATG **
13196247-T-TCACTC 11040571-T-TCACTC 5×CACTC**
13212122-C-A 11056446-C-A **
13220139-C-A 11064463-C-A **
13362187-C-A 11206511-C-A **
13449495-A-C 11293819-A-C **
13449502-C-A 11293826-C-A **
13450127-CATTCT-C 11294451-CATTCT-C **
13452033-C-A 11296357-C-A **
13470856-G-A 11315180-G-A **
13478340-C-T 11322664-C-T **
13483405-A-C 11327729-A-C **
13483414-T-A 11327738-T-A **
13483436-G-A 11327760-G-A **
13489627-C-CCAA 11333951-C-CCAA **
13489630-C-CCT 11333954-C-CCT **
13507112-C-T 11351436-C-T **
13596735-T-A 11441059-T-A **
11676644-C-T FT451444 DYZ17 **
13805130-C-A 11684424-C-A DYZ17 **
13827130-A-C 11706424-A-C DYZ17 **
13840718-C-A 11720012-C-A DYZ17 **
13866289-G-A 11745583-G-A DYZ17 **
13869294-T-A 11748588-T-A DYZ17 **
13902736-G-A 11782030-G-A **
13909721-A-C 11789015-A-C **
13940722-G-T 11820016-G-T **
14106828-C-T 11986122-C-T **
14180980-A-G 12060274-A-G **
14198580-A-G 12077874-A-G **
14218310-A-T 12097604-A-T **
14281846-GCAATGGAACTGTTTTCCAAGGGT-G 12161140-GCAATGGAACTGTTTTCCAAGGGT-G **
14286614-C-A 12165908-C-A **
14351999-C-A 12231294-C-A **
14426994-C-A 12306269-C-A **
14432410-C-A 12311683-C-A **
14475796-A-G 12355065-A-G **
14484350-C-A 12363619-C-A **
14511502-G-T 12399707-G-T **
14539752-C-A 12427953-C-A **
14558672-G-T 12446873-G-T **
14595424-C-A 12483624-C-A **
14610733-G-A 12498935-G-A FT21511 **
14614089-C-A 12502287-C-A **
14717731-G-T 12605799-G-T **
14728776-A-G 12616844-A-G **
14764477-A-T 12652546-A-T **
14764481-T-A 12652550-T-A **
14764490-C-T 12652559-C-T **
14764491-C-G 12652560-C-G **
14778900-A-C 12666970-A-C **
14795022-G-A 12683093-G-A FTB81133 **
14886295-G-A 12774361-G-A **
14970787-C-A 12858862-C-A **
15011890-G-T 12899978-G-T **
15232240-A-G 13120326-A-G **
15290198-C-A 13178297-C-A **
15352878-ATT-A 13240997-ATT-A **
15458093-C-A 13346213-C-A **
15462718-G-T 13350838-G-T **
15472036-C-A 13360156-C-A **
15515162-A-G 13403282-A-G **
15536179-G-A 13424299-G-A **
15663989-A-T 13552109-A-T **
15677843-C-A 13565963-C-A **
15717668-C-A 13605788-C-A **
15719591-C-A 13607711-C-A **
15721105-A-G 13609225-A-G **
15832261-C-A 13720381-C-A **
15863280-A-G 13751400-A-G **
15951999-C-T 13840119-C-T **
15974043-C-A 13862163-C-A **
16018913-A-G 13907033-A-G **
16032970-TA-T 13921090-TA-T **
16085394-C-A 13973514-C-A **
16176597-A-G 14064717-A-G **
16188823-C-A 14076943-C-A **
16238552-G-C 14126672-G-C FT83762 **
16352068-G-T 14240188-G-T **
16428518-A-G 14316638-A-G **
16454341-C-A 14342461-C-A **
16528044-C-A 14416164-C-A **
16729885-A-G 14618005-A-G **
16761368-T-C 14649488-T-C **
16784315-G-A 14672435-G-A **
16826512-C-A 14714632-C-A **
16971169-A-G 14859289-A-G **
16988956-A-G 14877076-A-G **
17023375-C-A 14911495-C-A **
17101665-C-A 14989785-C-A **
17128694-C-A 15016814-C-A **
17159112-A-G 15047232-A-G **
17159132-A-G 15047252-A-G **
17199449-T-G 15087569-T-G **
17220495-C-A 15108615-C-A **
17612903-T-C 15501023-T-C **
17633669-T-C 15521789-T-C **
17647491-C-A 15535611-C-A **
17672835-C-A 15560955-C-A **
17741433-G-T 15629553-G-T **
17918603-C-A 15806723-C-A **
17925280-C-A 15813400-C-A **
17978557-A-T 15866677-A-T **
18147679-C-A 16035799-C-A **
18266156-C-A 16154276-C-A **
18406814-A-G 16294934-A-G P6_Gap **
18512350-G-A 16400470-G-A P6_Dst **
18662429-TA-T 16550549-TA-T **
18836193-T-C 16724313-T-C **
18951961-A-G 16840081-A-G **
19168625-T-C 17056745-T-C **
19206570-A-G 17094690-A-G **
19250316-G-T 17138436-G-T **
19356520-T-C 17244640-T-C **
19402715-G-T 17290835-G-T **
19412401-C-A 17300521-C-A **
19450030-T-C 17338150-T-C **
19461202-C-A 17349322-C-A **
19461793-C-A 17349913-C-A **
19479498-G-A 17367618-G-A **
19520714-T-A 17408834-T-A **
19525193-C-A 17413313-C-A **
19599930-A-G 17488050-A-G P5_Prx **
19818820-A-G 17706940-A-G P5_Prx **
20001933-C-A 17890053-C-A P5_Prx **
20727532-T-TA 18565646-T-TA P4_Prx **
20872434-ATTTTT-A 18710548-ATTTTT-A P4_Dst 25×T**
20881862-C-CAAAA 18719976-C-CAAAA P4_Dst 16×A**
21090208-C-T 18928322-C-T **
21147821-C-A 18985935-C-A **
21220461-T-C 19058575-T-C **
21328289-G-C 19166403-G-C BY188151 **
21372471-C-A 19210585-C-A **
21387325-T-G 19225439-T-G **
21391720-C-A 19229834-C-A **
21433288-C-A 19271402-C-A **
21489119-G-T 19327233-G-T **
21546184-T-A 19384298-T-A **
21604250-C-A 19442364-C-A **
21725360-C-T 19563474-C-T **
21725367-C-T 19563481-C-T **
22055530-C-A 19893644-C-A **
22238489-T-A 20076603-T-A BY52138 DYZ19 **
22294854-T-A 20132968-T-A DYZ19 **
22301211-T-A 20139325-T-A BY188755 DYZ19 **
22537226-T-C 20375340-T-C **
22561305-A-G 20399419-A-G **
22629388-C-A 20467502-C-A **
22629923-TA-T 20468037-TA-T **
22658210-G-T 20496324-G-T **
22749378-G-T 20587492-G-T **
22864417-C-G 20702531-C-G **
22880840-G-A 20718954-G-A **
22897773-T-C 20735887-T-C **
23010299-G-T 20848413-G-T FT237966 **
23097227-C-A 20935341-C-A **
23255098-A-G 21093212-A-G **
23272864-CT-C 21110978-CT-C **
23412560-C-A 21250674-C-A **
23465968-G-T 21304082-G-T **
23779985-A-G 21618099-A-G **
23992022-C-A 21845875-C-A **
23994070-T-A 21847923-T-A **
24477421-C-A 22331274-C-A **
24513756-C-A 22367609-C-A **
25651823-CT-C 23505676-CT-C P1_b3 **
26106057-C-A 23959910-C-A P1_Y1 **
26234898-A-AGAG 24088751-A-AGAG P1_Y1 **
26234992-G-T 24088845-G-T P1_Y1 **
27699931-C-T 25553784-C-T P1_Y2 **
28562279-A-G 26416132-A-G **
28803603-G-C 26657456-G-C FT462268 **
9308-C-T **
28793217-C-G 26647070-C-G ***
22318104-T-C 20156218-T-C DYZ19 ***
22340050-T-C 20178164-T-C DYZ19 ***
8651208-TTG-T 8783167-TTG-T ***
7349941-C-A 7481900-C-A ******
22259206-A-G 20097320-A-G DYZ19 ***
22282427-G-T 20120541-G-T DYZ19 ***
22430446-G-C 20268560-G-C DYZ19 ******
24908836-C-A 22762689-C-A g1 8×T***
25000484-T-C 22854337-T-C g1 ***
25207054-G-A 23060907-G-A g1 ***
26272206-AAAAAG-A 24126059-AAAAAG-A P1_Y1 4×AAAAG***
26944985-T-G 24798838-T-G P1_r3 ***
27009328-C-T 24863181-C-T P1_r4 ***
28809477-G-C 26663330-G-C ***
2948624-G-GTA 3080583-G-GTA ***
23961933-G-GTA 21815786-G-GTA ***
17448696-C-A 15336816-C-A ***
14504492-C-A 12392697-C-A ***
5409810-G-T 5541769-G-T ***
13483338-G-C 11327662-G-C ***
8331697-CT-C 8463656-CT-C 10×T***
15326554-AT-A 13214672-AT-A 8×T***
17052015-C-A 14940135-C-A ***
28496837-C-A 26350690-C-A ***
9539269-G-T 9701660-G-T IR3_Prx ***
13456285-A-T 11300609-A-T ***
19216565-C-A 17104685-C-A ***
17203562-A-C 15091682-A-C ***
14547295-C-A 12435496-C-A ***
8558530-CT-C,CTT 8690489-CT-C,CTT 13×T***
4107862-G-A 4239821-G-A ***
14376327-C-A 12255623-C-A ***
13450174-C-A 11294498-C-A ***
14423420-C-A 12302695-C-A ***
15453242-C-A 13341362-C-A ***
14295809-C-A 12175103-C-A ***
21490889-C-A 19329003-C-A ***
2711945-C-A 2843904-C-A ***
2745615-C-A 2877574-C-A ***
2762705-CTT-C,CTTT 2894664-CTT-C,CTTT 16×T***
2804132-C-A 2936091-C-A ***
2847917-T-C 2979876-T-C ***
5189130-TGCTGATAA-T 5321089-TGCTGATAA-T ***
5409764-CTTTCTT-C 5541723-CTTTCTT-C ***
5409772-CTT-C 5541731-CTT-C ***
6707363-A-G 6839322-A-G ***
6715786-C-G 6847745-C-G ***
7134345-C-A 7266304-C-A ***
7193571-C-A 7325530-C-A ***
7244132-C-A 7376091-C-A ***
7289270-C-A 7421229-C-A ***
7429646-C-A 7561605-C-A ***
7713983-C-A 7845942-C-A ***
8209402-C-A 8341361-C-A ***
8227207-AG-A 8359166-AG-A ***
8274140-T-G 8406099-T-G ***
8382443-C-A 8514402-C-A ***
8798988-C-A 8930947-C-A ***
8840972-G-T 8972931-G-T ***
8841540-C-A 8973499-C-A ***
8848884-TCCCCAA-T 8980843-TCCCCAA-T ***
8881071-A-AG 9013030-A-AG ***
9050653-C-A 9213044-C-A ***
9130386-A-T 9292777-A-T ***
9848750-G-T 10011141-G-T ***
9983656-C-A 10146047-C-A ***
10018486-C-T 10180877-C-T ***
10038062-T-C 10200453-T-C ***
10958353-C-A,T ***
13446991-C-A 11291315-C-A ***
13468751-G-A 11313075-G-A ***
13634324-T-A 11478648-T-A ***
13690200-G-T 11534524-G-T DYZ17 ***
13712390-A-G 11556714-A-G DYZ17 ***
11643767-T-C,TTAACAC DYZ17 ***
11643768-G-C,GAATA DYZ17 ***
13842756-T-TCATCC 11722050-T-TCATCC DYZ17 ***
13867925-G-A 11747219-G-A DYZ17 ***
13934685-C-A 11813979-C-A ***
14043726-C-A 11923020-C-A ***
14272686-CTTT-C,CTTTT 12151980-CTTT-C,CTTTT 15×T***
14325151-T-C 12204445-T-C ***
14425893-A-T 12305168-A-T ***
14652371-G-A 12540436-G-A ***
15019818-G-A 12907907-G-A ***
15171979-C-A 13060065-C-A ***
15279646-C-A 13167745-C-A ***
16146535-T-C 14034655-T-C P8_Dst ***
16197444-G-T 14085564-G-T ***
16456226-C-A 14344346-C-A ***
16688732-C-A 14576852-C-A ***
16861206-A-G 14749326-A-G ***
16929004-C-A 14817124-C-A ***
17020729-C-A 14908849-C-A ***
17321230-AC-A 15209350-AC-A ***
17667283-T-C 15555403-T-C ***
18609364-C-A 16497484-C-A ***
18625638-G-T 16513758-G-T ***
18867223-A-G 16755343-A-G ***
18883893-C-A 16772013-C-A ***
19067738-C-A 16955858-C-A ***
19108646-C-A 16996766-C-A ***
19247999-C-A 17136119-C-A ***
19517083-C-A 17405203-C-A ***
19531701-C-T 17419821-C-T ***
21132259-C-A 18970373-C-A ***
21203063-A-G 19041177-A-G ***
21317169-C-A 19155283-C-A ***
21490373-ATTT-A 19328487-ATTT-A 15×T***
21691709-C-A 19529823-C-A ***
21809876-G-T 19647990-G-T ***
21909741-G-C 19747855-G-C ***
23010099-T-G 20848213-T-G ***
23061367-C-A 20899481-C-A ***
23079312-A-G 20917426-A-G ***
23122154-C-A 20960268-C-A ***
23236750-C-A 21074864-C-A ***
23327068-G-C 21165182-G-C ***
23359079-C-A 21197193-C-A ***
23745218-G-T 21583332-G-T ***
23756676-C-A 21594790-C-A ***
23779168-C-A 21617282-C-A ***
23974236-C-A 21828089-C-A ***
24006737-C-A 21860590-C-A ***
28531859-C-A 26385712-C-A ***
17141-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.