Shepherd

FTDNA: 207060, BigY2: 207060
MDKA Birth: France

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > FGC5494 > FGC5561 > A913 > A7607

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
207060		BigY2
207060		Manual
Edits
6381335-A-G 6513294-A-G ***A*
22309728-C-A 20147842-C-A DYZ19 ***A*
22304363-G-T 20142477-G-T DYZ19 A*
28816664-A-G 26670517-A-G A*
8193507-G-C 8325466-G-C A7609 YY++
14917065-G-A 12805132-G-A A7613 YY++
16444137-G-A 14332257-G-A A7616 YY++
19163445-C-G 17051565-C-G A7620 YY++
22088407-G-A 19926521-G-A A7622 YY++
20213174-TCTTCTC-T 18051288-TCTTCTC-T P5_Dst 6×CTTCTC+
22317680-G-A 20155794-G-A BY217306 DYZ19 +
9000031-G-C 9162422-G-C Y****
23554772-A-G 21392886-A-G YY****
19436730-AAGAAAGAA-A,AAGAGAG 17324850-AAGAAAGAA-A,AAGAGAG *
13858654-G-A 11737948-G-A PF7639 **
21984122-C-A 19822236-C-A **
13298306-G-A 11142630-G-A PF499 **
13453663-C-T 11297987-C-T **
14216371-G-A 12095665-G-A FT335367 **
16019072-G-T 13907192-G-T ****
28561762-C-G 26415615-C-G **
4700785-A-C 4832744-A-C **
7706319-C-A 7838278-C-A **
21785991-C-A 19624105-C-A **
10801692-C-G **
13939656-C-A 11818950-C-A **
10971952-C-G **
19125154-C-A 17013274-C-A **
7464019-C-A 7595978-C-A IR1_L **
6580504-C-A 6712463-C-A **
56831052-C-T **
23476245-C-A 21314359-C-A **
3627950-C-A 3759909-C-A **
20019210-A-C 17907330-A-C P5_Prx **
23009874-G-T 20847988-G-T **
18022384-C-A 15910504-C-A **
24070925-G-A 21924778-G-A P3_b1 **
14079496-A-C 11958790-A-C **
26435081-C-A 24288934-C-A P1_Y1 **
17821873-C-A 15709993-C-A **
20206646-A-AT 18044760-A-AT P5_Dst **
6445082-C-A 6577041-C-A **
10012719-C-A 10175110-C-A **
16180543-C-A 14068663-C-A **
18794874-C-A 16682994-C-A **
19112424-C-A 17000544-C-A **
15801666-C-A 13689786-C-A **
8110007-C-A 8241966-C-A **
9938404-C-A 10100795-C-A **
23475753-C-A 21313867-C-A **
14618711-C-A 12506909-C-A **
13314436-C-A 11158760-C-A **
17478335-C-A 15366455-C-A **
17859642-C-A 15747762-C-A **
5294496-C-A 5426455-C-A **
25592925-A-T 23446778-A-T P1_gr1 **
20019220-T-A 17907340-T-A BY1646 P5_Prx **
56828733-C-A **
15486059-C-A 13374179-C-A **
11022899-C-T **
16063006-C-A 13951126-C-A **
3275566-G-T 3407525-G-T **
14743703-C-A 12631772-C-A FT311932 **
27966779-A-AT 25820632-A-AT P1_Y2 **
13272266-C-A 11116590-C-A **
18201586-C-A 16089706-C-A **
6114160-C-T 6246119-C-T **
21783809-C-A **
14442876-C-A 12322149-C-A BY187095 **
11022908-A-T **
16405512-C-A 14293632-C-A **
5447032-C-A 5578991-C-A **
23013775-C-A 20851889-C-A **
10785770-C-A **
23026685-C-A 20864799-C-A **
6651582-T-G 6783541-T-G **
15034876-C-A 12922964-C-A **
10898385-C-A **
21665574-C-A 19503688-C-A **
4871944-C-A 5003903-C-A **
7197570-ATTTTT-A 7329529-ATTTTT-A 19×T**
9069042-A-G 9231433-A-G **
6464763-T-C 6596722-T-C **
19853738-G-T 17741858-G-T P5_Prx **
23142337-C-A 20980451-C-A **
17474710-T-G 15362830-T-G **
14462722-C-A 12341995-C-A **
13999350-C-A 11878644-C-A **
56842444-T-C **
18577079-C-A 16465199-C-A **
13235061-C-A 11079385-C-A **
9799446-C-A 9961837-C-A **
17428209-C-A 15316329-C-A **
17886490-C-A 15774610-C-A **
23262753-C-A 21100867-C-A **
16278641-C-A 14166761-C-A **
14196378-C-A 12075672-C-A **
28617732-C-A 26471585-C-A **
19154939-C-A 17043059-C-A **
18080481-C-A 15968601-C-A **
3695968-C-A 3827927-C-A **
19223090-T-C 17111210-T-C **
15061799-C-A 12949891-C-A **
28653866-C-A 26507719-C-A **
15882066-C-T 13770186-C-T **
14310377-C-A 12189671-C-A **
10653708-C-A **
9937091-C-A 10099482-C-A **
6464735-T-C 6596694-T-C **
5785653-C-T 5917612-C-T **
7111189-C-A 7243148-C-A Y136654 **
2758293-A-T 2890252-A-T **
2773806-A-G 2905765-A-G **
2839862-C-A 2971821-C-A **
2847221-T-C 2979180-T-C **
3033142-G-C 3165101-G-C **
3040618-T-G 3172577-T-G **
3151207-C-A 3283166-C-A **
3178295-A-T 3310254-A-T **
3192374-T-G 3324333-T-G **
3222723-G-T 3354682-G-T **
3222777-G-T 3354736-G-T **
3592389-G-A 3724348-G-A **
3610131-AG-T 3742090-AG-T **
3664473-GA-G 3796432-GA-G **
3704624-A-G 3836583-A-G FT15592 **
4016590-T-G 4148549-T-G **
4057329-G-T 4189288-G-T **
4057433-A-G 4189392-A-G **
4178881-T-C 4310840-T-C **
4179002-G-A 4310961-G-A FT319790 **
4208394-C-A 4340353-C-A **
4241643-C-A 4373602-C-A **
4537992-C-A 4669951-C-A **
4554559-G-A 4686518-G-A **
4585048-C-A 4717007-C-A **
4586084-A-T 4718043-A-T **
4788411-C-A 4920370-C-A **
4840565-C-A 4972524-C-A **
4899649-G-T 5031608-G-T **
4902321-A-G 5034280-A-G **
4919463-T-A 5051422-T-A **
4936979-CT-C 5068938-CT-C **
5270036-A-G 5401995-A-G **
5270087-C-A 5402046-C-A **
5270094-T-C 5402053-T-C **
5430808-CAAAAA-C 5562767-CAAAAA-C 25×A**
5650564-C-T 5782523-C-T **
5931146-C-A 6063105-C-A **
6063414-T-C 6195373-T-C **
6410068-T-C 6542027-T-C **
6410106-A-C 6542065-A-C **
6490908-A-T 6622867-A-T **
6512057-T-G 6644016-T-G **
6512072-G-A 6644031-G-A **
6512155-A-G 6644114-A-G **
6574981-C-G 6706940-C-G **
6580548-C-G 6712507-C-G **
6596678-G-T 6728637-G-T **
6619759-T-G 6751718-T-G **
6651552-A-G 6783511-A-G **
6731389-C-A 6863348-C-A **
6736335-C-A 6868294-C-A **
6747918-C-A 6879877-C-A **
6772131-A-T 6904090-A-T **
6795375-C-A 6927334-C-A **
6807888-G-T 6939847-G-T **
6807890-G-T 6939849-G-T **
6809326-C-T 6941285-C-T **
6827730-C-A 6959689-C-A **
6934817-A-G 7066776-A-G **
6981118-A-C 7113077-A-C **
7008702-C-A 7140661-C-A **
7012719-C-A 7144678-C-A **
7039260-T-C 7171219-T-C **
7043544-G-T 7175503-G-T **
7087780-G-T 7219739-G-T **
7108264-C-A 7240223-C-A **
7165387-C-A 7297346-C-A **
7181940-G-A 7313899-G-A **
7183980-G-C 7315939-G-C **
7185582-C-A 7317541-C-A **
7231661-C-A 7363620-C-A **
7238322-C-A 7370281-C-A **
7282397-C-T 7414356-C-T **
7308246-C-A 7440205-C-A **
7311522-A-G 7443481-A-G **
7311934-C-A 7443893-C-A **
7319188-T-G 7451147-T-G **
7335515-A-C 7467474-A-C **
7336233-T-C 7468192-T-C **
7338229-T-G 7470188-T-G **
7342103-A-G 7474062-A-G **
7615375-G-A 7747334-G-A **
7636488-T-C 7768447-T-C **
7733848-C-A 7865807-C-A **
7783166-C-T 7915125-C-T FT327355 **
7829023-G-C 7960982-G-C **
7886436-T-C 8018395-T-C **
7902694-C-A 8034653-C-A **
7996490-C-A 8128449-C-A **
8016935-TT-C 8148894-TT-C **
8092180-C-A 8224139-C-A **
8110548-A-G 8242507-A-G **
8142786-A-G 8274745-A-G **
8154126-C-A 8286085-C-A FGC79675 **
8178670-C-G 8310629-C-G **
8178804-C-G 8310763-C-G **
8270074-A-T 8402033-A-T **
8333572-T-TCTTCTC 8465531-T-TCTTCTC **
8371731-C-T 8503690-C-T **
8385337-C-A 8517296-C-A **
8481948-C-A 8613907-C-A **
8481980-A-G 8613939-A-G **
8556336-G-A 8688295-G-A **
8679503-G-T 8811462-G-T **
8679538-C-A 8811497-C-A **
8690241-A-G 8822200-A-G **
8698676-G-A 8830635-G-A **
8736166-C-A 8868125-C-A A797 **
8736301-C-G 8868260-C-G **
8736377-A-C 8868336-A-C **
8736380-A-G 8868339-A-G **
8746237-A-G 8878196-A-G **
8913651-G-T 9045610-G-T **
9108047-G-C **
9108127-G-A **
8974025-G-T 9136416-G-T **
8979938-T-C 9142329-T-C **
9361295-C-A 9523686-C-A **
9381117-C-A 9543508-C-A **
9427554-T-A 9589945-T-A **
9471699-C-A 9634090-C-A **
9531236-G-GTT 9693627-G-GTT IR3_Prx **
9602580-G-GGT 9764971-G-GGT IR3_Prx **
9725183-C-A 9887574-C-A IR3_Prx **
9874231-G-A 10036622-G-A **
9874944-G-T 10037335-G-T **
9940628-C-A 10103019-C-A **
10009574-C-A 10171965-C-A **
10016704-G-A 10179095-G-A **
10036789-T-C 10199180-T-C **
10627525-C-CTCCACTGAAG **
10627541-T-C **
10627557-C-CA **
10657288-T-C **
10657372-C-CTCCATTCCATTCCAT **
10668987-C-A **
10825879-T-C **
10929465-T-C **
10971101-A-C **
11037243-G-A **
13197195-C-A 11041519-C-A **
13216699-C-A 11061023-C-A **
13234300-A-C 11078624-A-C **
13235401-T-C 11079725-T-C FT441552 **
13276759-T-G 11121083-T-G **
13311865-C-A 11156189-C-A **
13462025-C-A 11306349-C-A **
13550753-G-A 11395077-G-A **
13550766-T-G 11395090-T-G **
13564625-A-G 11408949-A-G **
13565680-A-G 11410004-A-G **
13585913-C-A 11430237-C-A **
13596648-C-A 11440972-C-A **
13621047-C-G 11465371-C-G **
13621052-G-T 11465376-G-T **
11659436-G-A **
11663444-A-C **
13821695-A-G 11700989-A-G **
13880701-C-A 11759995-C-A **
13896174-C-A 11775468-C-A **
13909368-C-A 11788662-C-A **
13935811-C-A 11815105-C-A **
13938769-G-A 11818063-G-A **
13945176-T-C 11824470-T-C **
13956861-A-T 11836155-A-T **
13956930-G-C 11836224-G-C **
14002594-T-C 11881888-T-C **
14076705-GC-G 11955999-GC-G **
14076710-C-A 11956004-C-A **
14101009-T-G 11980303-T-G **
14198179-T-A 12077473-T-A **
14218734-T-C 12098028-T-C **
14278425-C-A 12157719-C-A **
14352715-C-A 12232010-C-A **
14357679-C-A 12236974-C-A **
14358248-A-T 12237543-A-T **
14405724-C-A 12285021-C-A **
14463689-A-T 12342962-A-T **
14473759-A-G 12353028-A-G **
14500236-T-G 12388441-T-G **
14500255-C-T 12388460-C-T **
14502716-C-A 12390921-C-A **
14505962-T-C 12394167-T-C **
14513265-T-A 12401470-T-A **
14577379-A-G 12465579-A-G **
14586297-T-A 12474497-T-A **
14689072-G-C 12577138-G-C **
14912103-C-A 12800170-C-A **
14914744-C-A 12802811-C-A **
14916799-G-T 12804866-G-T **
15082096-G-T 12970186-G-T **
15092637-G-A 12980726-G-A **
15092642-A-G 12980731-A-G **
15111375-T-C 12999462-T-C **
15197492-T-G 13085578-T-G **
15210677-C-A 13098763-C-A **
15210739-C-T 13098825-C-T **
15276452-C-T 13164541-C-T **
15290231-T-A 13178330-T-A **
15395160-C-A 13283280-C-A **
15442280-C-A 13330400-C-A **
15455081-C-A 13343201-C-A **
15477861-G-T 13365981-G-T **
15532368-A-T 13420488-A-T **
15671161-T-C 13559281-T-C **
15676985-C-A 13565105-C-A **
15684323-T-A 13572443-T-A **
15685085-C-G 13573205-C-G **
15687695-G-T 13575815-G-T **
15701090-C-A 13589210-C-A **
15739718-C-A 13627838-C-A **
15777047-G-C 13665167-G-C **
15842624-C-A 13730744-C-A **
15863287-C-A 13751407-C-A **
15931445-C-A 13819565-C-A **
15941402-C-A 13829522-C-A **
16035577-C-A 13923697-C-A **
16036276-C-A 13924396-C-A **
16048312-T-C 13936432-T-C **
16060283-C-A 13948403-C-A **
16079271-A-G 13967391-A-G **
16176528-G-C 14064648-G-C **
16220809-T-A 14108929-T-A **
16271214-C-A 14159334-C-A **
16278636-T-G 14166756-T-G **
16309398-C-G 14197518-C-G **
16342558-A-T 14230678-A-T **
16474826-C-A 14362946-C-A **
16526486-C-A 14414606-C-A **
16572654-C-A 14460774-C-A **
16623929-T-C 14512049-T-C **
16675820-T-C 14563940-T-C **
16675829-C-A 14563949-C-A **
16703943-C-A 14592063-C-A **
16707403-CT-C 14595523-CT-C **
16733623-G-T 14621743-G-T **
16980053-T-G 14868173-T-G **
17042811-G-C 14930931-G-C **
17089023-A-G 14977143-A-G **
17098958-C-A 14987078-C-A **
17159598-G-A 15047718-G-A **
17215996-A-G 15104116-A-G **
17224297-C-A 15112417-C-A **
17455973-C-A 15344093-C-A **
17461894-C-A 15350014-C-A **
17474787-A-T 15362907-A-T **
17478826-G-C 15366946-G-C **
17548579-T-C 15436699-T-C **
17730468-G-A 15618588-G-A **
17794197-T-C 15682317-T-C **
17831204-T-G 15719324-T-G **
17831211-T-C 15719331-T-C **
17860771-G-T 15748891-G-T **
17885085-C-A 15773205-C-A **
18022327-C-A 15910447-C-A **
18097848-C-A 15985968-C-A **
18195131-C-A 16083251-C-A **
18288705-C-A 16176825-C-A P6_Prx **
18328663-G-T 16216783-G-T P6_Prx **
18406834-G-T 16294954-G-T FGC72306 P6_Gap **
18564907-C-A 16453027-C-A FT297709 **
18701713-A-T 16589833-A-T **
18707914-A-G 16596034-A-G **
18751034-C-A 16639154-C-A **
18778945-C-A 16667065-C-A **
18948112-C-A 16836232-C-A **
18953024-AAAGG-A 16841144-AAAGG-A 4×AAGG**
18963975-G-T 16852095-G-T **
18969376-C-A 16857496-C-A **
18993340-C-A 16881460-C-A **
19012569-T-C 16900689-T-C **
19071072-G-T 16959192-G-T **
19071085-A-C 16959205-A-C **
19071133-G-C 16959253-G-C **
19071622-T-C 16959742-T-C **
19125170-A-G 17013290-A-G **
19241468-C-A 17129588-C-A **
19248041-A-C 17136161-A-C **
19377226-G-A 17265346-G-A **
19431531-C-T 17319651-C-T **
19448470-C-A 17336590-C-A **
19449218-G-A 17337338-G-A FTB72588 **
19482140-G-A 17370260-G-A FT140256 **
19558401-C-A 17446521-C-A **
19888739-T-TG 17776859-T-TG P5_Prx **
19926980-TA-T 17815100-TA-T P5_Prx **
20352290-C-A 18190404-C-A P5_Dst **
20807171-C-A 18645285-C-A P4_Gap **
21077778-A-G 18915892-A-G **
21177336-T-A 19015450-T-A **
21189596-C-A 19027710-C-A **
21248768-T-A 19086882-T-A **
21248782-A-T 19086896-A-T **
21476136-C-A 19314250-C-A **
21476202-A-T 19314316-A-T **
21476221-T-C 19314335-T-C **
21476226-T-A 19314340-T-A **
21476414-TA-T 19314528-TA-T **
21544849-C-A 19382963-C-A **
21546161-C-A 19384275-C-A **
21552251-G-T 19390365-G-T **
21699145-G-C 19537259-G-C **
21761163-C-A 19599277-C-A **
21834239-A-G 19672353-A-G **
22177475-C-A 20015589-C-A **
22362025-T-A 20200139-T-A DYZ19 **
22522754-C-A 20360868-C-A **
22660991-T-C 20499105-T-C **
22843797-C-A 20681911-C-A **
22857794-C-A 20695908-C-A **
22880821-T-G 20718935-T-G **
23006973-G-T 20845087-G-T **
23062156-T-A 20900270-T-A **
23091628-C-A 20929742-C-A **
23280339-C-A 21118453-C-A **
23340206-G-T 21178320-G-T **
23358968-A-G 21197082-A-G **
23372899-T-A 21211013-T-A **
23393224-C-A 21231338-C-A **
23420609-C-A 21258723-C-A **
23425461-T-G 21263575-T-G **
23425468-A-T 21263582-A-T **
23425480-C-T 21263594-C-T **
23446967-T-G 21285081-T-G **
23446983-T-A 21285097-T-A **
23446984-T-G 21285098-T-G **
23514357-C-T 21352471-C-T **
23648290-C-A 21486404-C-A **
23838853-C-A 21676967-C-A **
24003086-A-C 21856939-A-C **
24003094-T-A 21856947-T-A **
24402062-T-C 22255915-T-C **
24508320-C-A 22362173-C-A **
24595333-G-T 22449186-G-T P3_t2 **
28497297-C-A 26351150-C-A **
28591656-T-C 26445509-T-C **
28622672-C-T 26476525-C-T **
28640337-G-A 26494190-G-A **
28643808-T-C 26497661-T-C **
28709070-CA-C 26562923-CA-C **
28726666-C-A 26580519-C-A FT202980 **
28782134-C-A 26635987-C-A **
28800584-T-A 26654437-T-A **
56828523-C-A **
56835462-AT-A **
56842434-A-G **
56849418-G-T **
22359150-C-G 20197264-C-G DYZ19 ***
22363618-G-T 20201732-G-T DYZ19 ***
22363670-T-A 20201784-T-A DYZ19 ***
22363722-G-T 20201836-G-T DYZ19 ***
22247611-G-A 20085725-G-A DYZ19 ***
22363353-G-T 20201467-G-T DYZ19 ***
22438513-A-T 20276627-A-T DYZ19 ***
22454880-AG-A 20292994-AG-A DYZ19 ***
26379427-A-G 24233280-A-G P1_Y1 ***
14398919-CA-C,CAA 12278215-CA-C,CAA 15×A***
9852489-C-A 10014880-C-A ***
19547815-TA-T,TAA 17435935-TA-T,TAA 16×A***
15619542-C-A 13507662-C-A ***
11643669-G-C ***
19415248-C-A 17303368-C-A ***
8875170-C-CA 9007129-C-CA 9×A***
7111251-C-A 7243210-C-A ***
9907718-G-T 10070109-G-T ***
16486626-C-A 14374746-C-A ***
11657213-G-A BY30328 ***
2649843-G-T 2781802-G-T ***
6149887-C-A 6281846-C-A IR3_Dst ***
6655019-G-A 6786978-G-A ***
6803887-T-C 6935846-T-C ***
7012195-C-A 7144154-C-A ***
7420869-T-A 7552828-T-A ***
7670570-C-A 7802529-C-A ***
8384596-G-T 8516555-G-T ***
8853300-G-T 8985259-G-T ***
9139868-G-A 9302259-G-A ***
10093845-C-A 10256236-C-A ***
10999879-C-CGCTGCACTCACGTTC,T ***
10999895-A-C ***
13228736-G-A 11073060-G-A ***
13448042-C-A 11292366-C-A ***
13463255-CC-C,CG 11307579-CC-C,CG ***
13464504-C-A 11308828-C-A ***
13681114-CA-C 11525438-CA-C ***
11643732-T-TTAACCC ***
11643733-G-GAATA ***
11643766-A-ACGAAT ***
13808375-C-A 11687669-C-A ***
13833581-G-A 11712875-G-A ***
13833611-G-A 11712905-G-A ***
15190047-ATTT-A,ATT 13078133-ATTT-A,ATT 15×T***
15391079-C-A 13279199-C-A ***
16278770-C-A 14166890-C-A ***
16581392-G-A 14469512-G-A ***
16705468-G-T 14593588-G-T ***
17326603-C-A 15214723-C-A ***
18933603-A-G 16821723-A-G ***
19040508-C-G 16928628-C-G ***
19187410-TTTTG-T,TTTG 17075530-TTTTG-T,TTTG ***
19226188-AATAGATAGATAG-A,AATAG 17114308-AATAGATAGATAG-A,AATAG 14×ATAG***
19531264-A-G 17419384-A-G ***
21137665-C-A 18975779-C-A ***
22067724-C-A 19905838-C-A ***
22511358-C-A 20349472-C-A DYZ19 ***
22629476-C-A 20467590-C-A ***
22633940-GT-G 20472054-GT-G ***
22658081-A-G 20496195-A-G ***
23277763-A-G 21115877-A-G ***
23565518-G-A 21403632-G-A ***
28754535-TA-T 26608388-TA-T ***
56836925-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual22462165-C-T20300279-C-T61T 11C. At least 7 of the C reads clearly don't belong there.
Manual14484864-C-G12364133-C-G6G
Manual18774963-G-A16663083-G-A13A