Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > ZZ19 > Z31644 > Z42772 > BY2285 > FGC22202 > 14578304-G-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
275327
BigY2
275327
22304459-T-C 20142573-T-C DYZ19 A*
6324580-T-G 6456539-T-G IR3_Dst ***A*
28817116-G-T 26670969-G-T A*
19909316-C-T 17797436-C-T P5_Prx ***A*
26106985-T-G 23960838-T-G P1_Y1 ***A*
22834859-C-T 20672973-C-T BY19106 YY++
22466261-C-T 20304375-C-T Z17624Z17631 DYZ19 ++
8184095-G-A 8316054-G-A BY19110 YY++
2828047-A-C 2960006-A-C BY19109 YY++
22626190-T-C 20464304-T-C BY19105 YY++
13703846-G-T 11548170-G-T ZS10256 ***+
14327466-C-A 12206760-C-A BY19112 YY++
14892174-T-A 12780240-T-A BY19113 YY++
21180857-G-A 19018971-G-A BY19101 YY++
21651380-G-A 19489494-G-A BY19102 YY++
8184096-T-A 8316055-T-A BY19111 YY++
21834814-C-T 19672928-C-T BY19103 Y++
22898564-A-G 20736678-A-G BY19107 YY++
22995-G-T +
10649-G-A +
22461221-G-A 20299335-G-A BY19104 DYZ19 ++
23282939-G-C 21121053-G-C BY19108 YY++
22346353-G-T 20184467-G-T DYZ19 ****
22346348-G-A 20184462-G-A DYZ19 ****
6347750-G-GA 6479709-G-GA *
18162503-A-G 16050623-A-G A1139 YY*
16783548-G-A 14671668-G-A **
16836741-C-T 14724861-C-T **
16710034-G-T 14598154-G-T **
16678680-T-C 14566800-T-C F20950 **
16852886-C-A 14741006-C-A **
16827607-A-G 14715727-A-G **
16598529-T-G 14486649-T-G **
16836745-T-C 14724865-T-C **
16502536-T-A 14390656-T-A **
16491292-A-G 14379412-A-G **
16719433-C-A 14607553-C-A **
35445-G-T **
16490944-G-T 14379064-G-T **
15888320-G-A 13776440-G-A **
15570148-G-A 13458268-G-A **
15595179-T-C 13483299-T-C **
15636860-C-A 13524980-C-A **
15699955-C-A 13588075-C-A **
15734350-C-T 13622470-C-T **
15739222-T-C 13627342-T-C **
15755252-C-A 13643372-C-A **
15847578-T-G 13735698-T-G **
15866667-C-A 13754787-C-A **
15911447-T-C 13799567-T-C **
16478253-C-A 14366373-C-A **
15937348-C-T 13825468-C-T **
15974968-A-T 13863088-A-T **
16027783-G-T 13915903-G-T **
16045345-C-A 13933465-C-A **
16057326-T-C 13945446-T-C **
16085730-C-A 13973850-C-A **
16241818-C-G 14129938-C-G **
16409086-C-A 14297206-C-A **
16474607-G-A 14362727-G-A **
16448212-C-T 14336332-C-T **
17194350-G-T 15082470-G-T **
16900999-G-A 14789119-G-A **
18425320-C-A 16313440-C-A P6_Gap **
18155614-C-A 16043734-C-A **
18159102-C-A 16047222-C-A **
18186056-C-A 16074176-C-A **
18191248-C-A 16079368-C-A **
18210897-C-A 16099017-C-A **
18346473-C-CTGTG 16234593-C-CTGTG P6_Prx 22×TG**
18379869-T-TG 16267989-T-TG P6_Prx **
18471860-C-T 16359980-C-T P6_Dst **
17926534-C-A 15814654-C-A 25×A**
18629328-C-A 16517448-C-A **
18636857-C-T 16524977-C-T **
18716605-A-C 16604725-A-C **
18716613-TAA-T 16604733-TAA-T **
18716627-A-AG 16604747-A-AG **
18742247-C-A 16630367-C-A **
18747047-G-T 16635167-G-T **
18747049-C-T 16635169-C-T **
18003889-C-A 15892009-C-A P7_Gap **
17862610-C-A 15750730-C-A **
17046818-C-A 14934938-C-A **
17317433-A-G 15205553-A-G **
17055775-T-A 14943895-T-A **
17092454-T-C 14980574-T-C **
17117423-A-AT 15005543-A-AT 9×T**
17167874-C-A 15055994-C-A **
15533080-C-A 13421200-C-A **
17216059-C-A 15104179-C-A **
17224277-C-T 15112397-C-T **
17226762-G-A 15114882-G-A **
17338569-T-C 15226689-T-C FGC75865 **
17792237-CA-C 15680357-CA-C **
17338576-A-C 15226696-A-C **
17352417-C-A 15240537-C-A **
17367934-G-A 15256054-G-A **
17386737-C-T 15274857-C-T **
17416932-CT-C 15305052-CT-C **
17445375-C-A 15333495-C-A **
17668132-C-A 15556252-C-A **
17717312-G-A 15605432-G-A **
15542574-C-T 13430694-C-T **
15333984-C-A 13222102-C-A **
15500725-T-C 13388845-T-C **
14351458-C-A 12230753-C-A **
14181191-T-A 12060485-T-A **
14187862-C-A 12067156-C-A **
14286876-G-A 12166170-G-A **
14298639-C-A 12177933-C-A **
14300144-C-A 12179438-C-A **
14350240-C-A 12229535-C-A **
14377877-A-T 12257173-A-T **
14123295-T-C 12002589-T-C **
14379913-C-A 12259209-C-A **
14401871-G-T 12281168-G-T **
14401872-T-A 12281169-T-A **
14401882-CA-C 12281179-CA-C **
14408609-C-A 12287907-C-A **
14424896-C-A 12304171-C-A **
14448412-T-C 12327685-T-C **
14144172-G-T 12023466-G-T **
14088736-C-T 11968030-C-T **
14476000-C-T 12355269-C-T **
11672599-A-T **
13461365-C-G 11305689-C-G **
13461397-GC-G 11305721-GC-G **
13471079-C-A 11315403-C-A **
13472287-G-A 11316611-G-A **
13481383-T-C 11325707-T-C **
13498252-C-A 11342576-C-A **
13545059-C-A 11389383-C-A **
13804019-T-C 11683313-T-C **
14079493-CT-C 11958787-CT-C **
13921077-G-A 11800371-G-A **
13984931-T-G 11864225-T-G **
13989226-G-T 11868520-G-T **
13993283-C-A 11872577-C-A **
14046868-C-A 11926162-C-A **
14069248-C-A 11948542-C-A **
14073126-C-A 11952420-C-A **
14475891-CA-C 12355160-CA-C **
14515737-T-C 12403938-T-C **
15489474-C-A 13377594-C-A **
15380330-T-C 13268450-T-C **
15171547-G-T 13059633-G-T **
15172757-T-C 13060843-T-C **
15248213-G-A 13136299-G-A **
15251957-C-A 13140043-C-A **
15276333-C-A 13164422-C-A **
18837484-C-A 16725604-C-A **
15358587-C-A 13246706-C-A **
15400236-C-A 13288356-C-A **
15068990-C-A 12957081-C-A **
15452619-T-C 13340739-T-C **
15452620-A-T 13340740-A-T **
15486011-A-T 13374131-A-T **
15486014-A-C 13374134-A-C **
15486015-C-A 13374135-C-A **
15486017-G-T 13374137-G-T **
15486025-C-A 13374145-C-A **
15116346-G-T 13004433-G-T **
15035035-C-T 12923123-C-T **
14525305-G-A 12413506-G-A **
14766703-C-T 12654772-C-T **
14589529-G-T 12477729-G-T **
14648601-C-A 12536666-C-A **
14657553-C-A 12545618-C-A **
14657616-C-A 12545681-C-A **
14766692-TG-T 12654761-TG-T **
14766701-C-A 12654770-C-A **
14766702-A-G 12654771-A-G **
14766704-C-G 12654773-C-G **
14993153-C-A 12881238-C-A **
14774253-C-CTT 12662322-C-CTT 28×T**
14786250-C-A 12674320-C-A **
14786607-C-CAT 12674677-C-CAT **
14786621-C-T 12674691-C-T **
14795374-C-A 12683445-C-A **
14842491-C-A 12730557-C-A **
14986440-A-G 12874508-A-G **
18806136-C-A 16694256-C-A **
19122182-C-T 17010302-C-T **
18904795-C-A 16792915-C-A **
22914455-C-T 20752569-C-T **
22851287-C-A 20689401-C-A **
22855083-T-C 20693197-T-C **
22914447-T-C 20752561-T-C **
22914448-G-A 20752562-G-A **
22914451-C-A 20752565-C-A **
22914452-A-G 20752566-A-G **
22914459-C-T 20752573-C-T **
22829576-C-A 20667690-C-A **
22914465-G-C 20752579-G-C **
22951810-C-A 20789924-C-A **
22965190-T-C 20803304-T-C **
22995898-C-A 20834012-C-A **
23026637-TA-T 20864751-TA-T **
23026643-G-T 20864757-G-T **
23061767-C-A 20899881-C-A **
22851281-A-C 20689395-A-C **
22829551-C-A 20667665-C-A **
23143115-T-C 20981229-T-C **
22527229-G-T 20365343-G-T **
22097308-CTAATGAG-C 19935422-CTAATGAG-C **
22182979-G-A 20021093-G-A **
22340071-T-G 20178185-T-G DYZ19 **
22483898-C-A 20322012-C-A DYZ19 **
22509067-C-G 20347181-C-G DYZ19 **
22509077-T-A 20347191-T-A DYZ19 **
22510947-A-T 20349061-A-T DYZ19 **
22590858-T-C 20428972-T-C **
22659519-A-C 20497633-A-C **
22611426-T-G 20449540-T-G **
22629569-A-C 20467683-A-C **
22629574-A-T 20467688-A-T **
22629578-C-T 20467692-C-T **
22629582-T-C 20467696-T-C **
22629583-G-A 20467697-G-A **
22649338-C-A 20487452-C-A **
23138727-C-A 20976841-C-A **
23407879-C-A 21245993-C-A **
22092811-G-A 19930925-G-A **
28730069-C-A 26583922-C-A **
28612185-G-T 26466038-G-T **
28622245-C-A 26476098-C-A **
28626148-C-A 26480001-C-A **
28635074-C-A 26488927-C-A **
28659412-C-A 26513265-C-A **
28711544-T-A 26565397-T-A **
28721499-C-CAA 26575352-C-CAA 18×A**
28733454-G-T 26587307-G-T **
28473033-A-C 26326886-A-C **
28767868-C-A 26621721-C-A **
28776748-T-C 26630601-T-C **
56681957-G-T **
56827489-G-T **
56828701-T-G **
56870122-C-A **
7047-T-C **
28473034-CT-C 26326887-CT-C **
28471406-C-A 26325259-C-A **
23465940-C-T 21304054-C-T **
23801670-T-C 21639784-T-C **
23522306-C-A 21360420-C-A **
23609522-C-A 21447636-C-A FGC6166 **
23609931-C-A 21448045-C-A **
23612640-G-T 21450754-G-T **
23768713-C-A 21606827-C-A **
23777706-A-G 21615820-A-G **
23801665-A-G 21639779-A-G **
24382041-A-G 22235894-A-G **
27810352-G-A 25664205-G-A P1_Y2 **
24425365-A-G 22279218-A-G BY36868 8×TG**
24880259-C-A 22734112-C-A g1 **
25971784-C-A 23825637-C-A P1_Y1 **
26045996-T-C 23899849-T-C P1_Y1 **
26080922-A-AT 23934775-A-AT P1_Y1 **
26427219-C-A 24281072-C-A P1_Y1 **
27810348-G-C 25664201-G-C P1_Y2 **
22092812-G-T 19930926-G-T **
22092802-G-A 19930916-G-A **
18925359-A-C 16813479-A-C **
19811676-T-A 17699796-T-A P5_Prx **
19538427-C-A 17426547-C-A **
19539639-AT-A 17427759-AT-A **
19547746-G-A 17435866-G-A FGC68882 **
19562694-T-G 17450814-T-G **
19563149-C-A 17451269-C-A **
19682355-A-AAGAG 17570475-A-AAGAG P5_Prx 12×AAAG**
20252849-A-G 18090963-A-G P5_Dst **
19493963-T-C 17382083-T-C **
20432862-AT-A 18270976-AT-A P5_Dst **
20432865-C-CAGT 18270979-C-CAGT P5_Dst **
20611327-G-T 18449441-G-T P5_Dst **
20700271-A-G 18538385-A-G P4_Prx **
20839596-C-A 18677710-C-A P4_Gap **
21009170-T-A 18847284-T-A P4_Dst **
21009172-A-G 18847286-A-G P4_Dst **
19530442-C-A 17418562-C-A **
19382304-G-C 17270424-G-C 7×ATT**
21069683-G-A 18907797-G-A **
19122158-C-A 17010278-C-A **
18966090-C-A 16854210-C-A **
19019306-C-A 16907426-C-A **
19061312-G-C 16949432-G-C **
19062106-C-G 16950226-C-G **
19075498-A-C 16963618-A-C **
19122147-A-G 17010267-A-G **
19122155-T-C 17010275-T-C **
19122167-T-TC 17010287-T-TC **
19373682-C-A 17261802-C-A **
19122178-A-G 17010298-A-G **
19122179-T-G 17010299-T-G **
13447235-C-A 11291559-C-A **
19161122-C-A 17049242-C-A **
19232954-C-A 17121074-C-A **
19361250-A-C 17249370-A-C **
19361255-T-C 17249375-T-C **
21009173-T-TAAG 18847287-T-TAAG P4_Dst **
21069694-T-A 18907808-T-A **
22092800-A-C 19930914-A-C **
22011369-T-C 19849483-T-C **
21584165-G-T 19422279-G-T **
21606200-A-T 19444314-A-T **
21681624-C-T 19519738-C-T **
21681630-G-A 19519744-G-A **
21902677-A-G 19740791-A-G **
21902685-T-C 19740799-T-C **
21909533-C-A 19747647-C-A **
22011375-A-G 19849489-A-G **
21435439-G-A 19273553-G-A **
22011381-G-A 19849495-G-A **
22011382-C-T 19849496-C-T **
22011390-G-C 19849504-G-C **
22011394-T-C 19849508-T-C **
22011398-AATAC-A 19849512-AATAC-A **
22033509-G-T 19871623-G-T **
22092798-G-A 19930912-G-A **
21436678-C-A 19274792-C-A **
21409402-G-GA 19247516-G-GA **
21082044-A-G 18920158-A-G **
21209032-CGGAT-C 19047146-CGGAT-C 4×GGAT**
21115908-G-T 18954022-G-T **
21132092-C-A 18970206-C-A **
21135155-T-G 18973269-T-G **
21146361-C-A 18984475-C-A **
21149628-C-T 18987742-C-T **
21187909-T-A 19026023-T-A **
21200824-C-A 19038938-C-A **
21228171-A-C 19066285-A-C **
21409177-C-A 19247291-C-A **
21266812-A-G 19104926-A-G **
21285634-C-A 19123748-C-A **
21302561-C-A 19140675-C-A **
21316337-G-A 19154451-G-A **
21317702-C-A 19155816-C-A **
21329393-C-A 19167507-C-A **
21389730-C-A 19227844-C-A **
13461276-T-C 11305600-T-C **
13579881-C-A 11424205-C-A **
13323472-C-A 11167796-C-A **
6734869-G-A 6866828-G-A **
6592447-A-G 6724406-A-G **
6596056-C-A 6728015-C-A **
6620517-C-A 6752476-C-A **
6620659-C-A 6752618-C-A **
6697301-C-A 6829260-C-A **
6709018-C-A 6840977-C-A **
6752102-T-C 6884061-T-C **
6177527-G-T 6309486-G-T IR3_Dst **
6752112-T-A 6884071-T-A **
6759457-C-A 6891416-C-A **
6763922-C-T 6895881-C-T **
6763941-C-T 6895900-C-T **
6763956-A-G 6895915-A-G **
6763961-G-C 6895920-G-C **
6352496-G-T 6484455-G-T **
6026830-C-A 6158789-C-A **
6763971-A-G 6895930-A-G **
4919955-C-A 5051914-C-A **
4433565-C-G 4565524-C-G **
4433611-G-T 4565570-G-T **
4533662-G-C 4665621-G-C **
4751909-G-T 4883868-G-T **
4847501-G-T 4979460-G-T **
4847596-T-C 4979555-T-C **
5084709-C-A 5216668-C-A **
5980541-C-A 6112500-C-A **
5212613-C-A 5344572-C-A **
5309658-T-G 5441617-T-G **
5459319-C-A 5591278-C-A **
5554419-C-A 5686378-C-A **
5818413-T-C 5950372-T-C **
5861152-GA-G 5993111-GA-G **
6763970-C-T 6895929-C-T **
6765556-C-A 6897515-C-A **
4347280-G-T 4479239-G-T **
7360114-A-G 7492073-A-G **
7313431-G-T 7445390-G-T **
7313433-A-T 7445392-A-T **
7313782-C-A 7445741-C-A **
7329223-A-G 7461182-A-G **
7334138-C-T 7466097-C-T **
7337905-G-T 7469864-G-T **
7363138-C-A 7495097-C-A **
7249343-C-A 7381302-C-A **
7387777-A-G 7519736-A-G **
7417119-C-A 7549078-C-A **
7420873-C-A 7552832-C-A **
7579084-G-T 7711043-G-T **
7582003-A-G 7713962-A-G **
7583461-AT-A 7715420-AT-A **
7266470-C-A 7398429-C-A **
7172036-C-T 7303995-C-T **
6768982-T-G 6900941-T-G **
6838491-C-A 6970450-C-A Y14078 **
6771411-GAAGCAA-G 6903370-GAAGCAA-G **
6772075-C-A 6904034-C-A **
6772123-T-A 6904082-T-A **
6773156-C-A 6905115-C-A **
13294158-C-A 11138482-C-A **
6827143-T-C 6959102-T-C Y82632 **
6909468-C-A 7041427-C-A **
7126006-G-T 7257965-G-T **
6949422-C-A 7081381-C-A **
7011381-C-A 7143340-C-A **
7035150-C-A 7167109-C-A **
7044159-C-A 7176118-C-A **
7111933-C-A 7243892-C-A **
7112510-GAAA-G 7244469-GAAA-G **
7116528-C-A 7248487-C-A **
4366636-C-A 4498595-C-A **
4334783-C-A 4466742-C-A **
7695637-C-A 7827596-C-A **
16783547-A-T 14671667-A-T **
7228488-C-A 7360447-C-A **
15406744-C-A 13294864-C-A **
6967808-C-A 7099767-C-A **
8398963-C-A 8530922-C-A **
13488799-A-G 11333123-A-G **
15700397-GA-G 13588517-GA-G 9×A**
3817983-C-A 3949942-C-A **
2853391-C-A 2985350-C-A **
13705519-T-A 11549843-T-A **
21476334-C-A 19314448-C-A **
13461348-A-G 11305672-A-G **
10980777-T-C **
10980783-C-T **
21438262-C-A 19276376-C-A **
17718331-T-C 15606451-T-C **
10888007-C-A **
24363615-T-TTC 22217468-T-TTC 9×TC**
16605728-C-T 14493848-C-T CTS6007 PF5306 AM00130 ****
13472286-T-C 11316610-T-C S14072 **
17822659-AT-A 15710779-AT-A 11×T****
14786619-G-A 12674689-G-A Y16067 **
13480303-C-G 11324627-C-G **
15775488-A-G 13663608-A-G PF4909 CTS4699 ****
13480327-A-C 11324651-A-C **
2842347-T-A 2974306-T-A ****
3963833-C-CA 4095792-C-CA 22×A**
7651412-C-T 7783371-C-T PR1086 **
22241670-C-A 20079784-C-A DYZ19 *****
22507302-T-G 20345416-T-G DYZ19 ****
18707169-C-A 16595289-C-A **
13461369-G-A 11305693-G-A **
15733582-A-G 13621702-A-G **
16180960-C-A 14069080-C-A **
17305262-A-C 15193382-A-C **
19644757-C-A 17532877-C-A P5_Prx **
4229111-A-G 4361070-A-G **
3735424-C-A 3867383-C-A **
2888758-C-T 3020717-C-T **
2943131-C-A 3075090-C-A **
3409580-C-A 3541539-C-A **
3440417-C-A 3572376-C-A **
3500586-C-A 3632545-C-A **
3702593-C-A 3834552-C-A **
3798809-G-T 3930768-G-T **
2799000-G-T 2930959-G-T **
3817989-A-C 3949948-A-C **
4016579-G-T 4148538-G-T **
4063129-C-A 4195088-C-A **
4064461-C-A 4196420-C-A **
4124501-T-C 4256460-T-C **
4133250-G-T 4265209-G-T **
2839874-C-A 2971833-C-A **
2738961-C-A 2870920-C-A **
10938414-C-T **
22507784-A-T 20345898-A-T DYZ19 **
10673972-G-T **
10946948-CTCCAT-C **
4504717-C-A 4636676-C-A **
26024549-T-TC 23878402-T-TC P1_Y1 **
5600976-C-A 5732935-C-A **
14965378-G-T 12853453-G-T **
22507808-G-A 20345922-G-A DYZ19 **
2696433-C-A 2828392-C-A **
18554342-C-A 16442462-C-A **
2784364-C-A 2916323-C-A **
7138864-C-A 7270823-C-A **
16847483-T-C 14735603-T-C **
21162226-C-A 19000340-C-A **
19255520-C-A 17143640-C-A **
2683974-C-A 2815933-C-A **
7619206-C-A 7751165-C-A **
6790061-TG-T 6922020-TG-T **
7850768-C-A 7982727-C-A **
10982248-C-CCCTTG **
10679240-G-A **
10679096-C-A **
10668866-ACATTC-A **
10938419-TTATAC-T **
10668308-TC-T **
10663046-G-A **
10660948-G-T **
13238408-C-A 11082732-C-A **
10024842-T-C 10187233-T-C **
10969285-C-G **
10969300-C-G **
9993612-C-A 10156003-C-A **
10744933-C-A **
11011462-A-ACATTC **
9956445-C-A 10118836-C-A **
9874917-G-T 10037308-G-T **
9820583-A-C 9982974-A-C **
11012344-A-C **
11015154-C-A **
9820550-T-C 9982941-T-C **
9807985-G-A 9970376-G-A **
13255874-A-G 11100198-A-G **
9398221-C-A 9560612-C-A **
13259024-C-A 11103348-C-A **
10683208-C-A **
10747956-G-T **
9063798-A-G 9226189-A-G **
10807189-C-T **
10938381-C-G **
10938372-C-A **
10935564-T-G **
10851425-T-A **
10938393-A-G **
10851291-A-T **
13250046-A-G 11094370-A-G **
10814148-C-A **
10807199-A-T **
10807194-T-G **
10807191-T-TTCATTCTGTA **
10807183-T-C **
10756962-T-TTCCATTCCACTGCAC **
10807182-T-C **
10938407-C-T **
10807173-C-T **
10807168-A-C **
10807167-C-G **
10807163-C-T **
10807147-CAACT-C **
10807142-CCA-C **
10805583-A-C **
10938410-T-TCCGTA **
10770489-TCACCC-T **
10938391-C-T **
13289536-A-G 11133860-A-G **
10938386-C-A **
8178239-C-T 8310198-C-T **
13202031-G-T 11046355-G-T **
8636920-C-A 8768879-C-A **
9017901-G-C 9180292-G-C **
8536106-T-C 8668065-T-C **
8341778-G-A 8473737-G-A **
8230248-C-A 8362207-C-A **
8216683-A-T 8348642-A-T **
8151589-G-A 8283548-G-A Z38487 **
8787462-C-A 8919421-C-A **
8131531-G-A 8263490-G-A **
8040111-G-A 8172070-G-A **
8040097-A-G 8172056-A-G **
7997015-G-T 8128974-G-T **
7970481-C-A 8102440-C-A **
7874690-C-A 8006649-C-A **
7862226-A-G 7994185-A-G **
13230596-A-G 11074920-A-G **
8753793-G-T 8885752-G-T **
13236392-C-A 11080716-C-A **
8907603-A-G 9039562-A-G **
8827279-GC-G 8959238-GC-G **
13200282-C-A 11044606-C-A **
9121728-C-A **
8824899-T-A 8956858-T-A **
8907556-G-T 9039515-G-T **
8907548-G-A 9039507-G-A **
9108422-G-T **
8907573-A-G 9039532-A-G **
13194061-C-A 11038385-C-A **
8853476-C-A 8985435-C-A **
8907555-T-C 9039514-T-C **
8827291-G-A 8959250-G-A **
13489811-A-G 11334135-A-G ***
22950852-C-A 20788966-C-A ***
58980581-A-T 56834434-A-T ***
22807826-C-A 20645940-C-A ***
22759920-A-G 20598034-A-G ***
22675023-G-A 20513137-G-A ***
22510956-G-A 20349070-G-A DYZ19 ***
22509329-G-A,T 20347443-G-A,T DYZ19 ***
14609018-A-AT 12497220-A-AT 11×T***
17298997-GGATA-G 15187117-GGATA-G 5×GATA***
26165748-G-C 24019601-G-C P1_Y1 ***
22291730-C-A 20129844-C-A DYZ19 ***
13485020-G-A 11329344-G-A ***
28800270-A-AGGAAT 26654123-A-AGGAAT ***
13483094-C-A 11327418-C-A ***
13459470-T-A,C 11303794-T-A,C ***
26165770-T-C 24019623-T-C P1_Y1 ***
59004623-GGAAAGAAA-C,G 56858476-GGAAAGAAA-C,G 16×GAAA***
13839755-CTAATG-C,CGAATG 11719049-CTAATG-C,CGAATG ***
26165773-C-G 24019626-C-G P1_Y1 ***
13478237-C-A 11322561-C-A ***
28799810-GTGGCA-A,G 26653663-GTGGCA-A,G ***
23252374-G-T 21090488-G-T ***
28800295-A-G 26654148-A-G ***
22308147-G-A 20146261-G-A DYZ19 ***
24229720-C-A 22083573-C-A P3_b1 ***
13691323-C-G 11535647-C-G ***
23418878-C-A 21256992-C-A ***
13459496-T-A,G 11303820-T-A,G ***
13489779-G-A 11334103-G-A ***
28786696-ATGGAG-A 26640549-ATGGAG-A ***
13450586-CTCCGC-C,CTCCAT 11294910-CTCCGC-C,CTCCAT ***
13803022-G-A 11682316-G-A ***
13466929-AG-C 11311253-AG-C ***
13457330-T-C 11301654-T-C ***
58974145-C-T 56827998-C-T ***
58975664-T-TTCCATTCCATTCCCG 56829517-T-TTCCATTCCATTCCCG ***
56685536-C-T ***
15320664-G-A,GGAAGAAGAA 13208770-GGAA-G,AGAA 18×GAA***
13803018-G-T 11682312-G-T ***
13803016-T-A 11682310-T-A ***
56831953-C-T ***
56833302-ATTC-A,TTTC ***
56847414-G-T ***
19966688-A-AAAGAAGAAGAAG 17854808-A-AAAGAAGAAGAAG P5_Prx 26×AAG***
13686860-A-G 11531184-A-G ***
13869095-G-A 11748389-G-A ***
13450201-G-A 11294525-G-A ***
28655976-C-A 26509829-C-A ***
13455466-C-T 11299790-C-T ***
22266445-G-A 20104559-G-A ZS6896 DYZ19 ***
13655403-C-A 11499727-C-A ***
22245948-G-A 20084062-G-A DYZ19 ***
22229105-T-C 20067219-T-C DYZ19 ***
20384619-G-GT 18222733-G-GT P5_Dst 16×T***
13820826-ATGGAT-C 11700120-ATGGAT-C ***
13691337-A-T 11535661-A-T ***
13489817-T-A 11334141-T-A ***
13691320-T-A 11535644-T-A ***
24001386-G-T 21855239-G-T ***
24394857-C-A 22248710-C-A ***
13655411-A-G 11499735-A-G ***
13464354-G-GC 11308678-G-GC ***
13459594-C-G 11303918-C-G ***
13457847-A-T 11302171-A-T ***
13470367-A-T 11314691-A-T ***
13691327-C-T 11535651-C-T A16880 ***
13458701-C-T 11303025-C-T ***
13453688-C-A 11298012-C-A ***
8892069-G-A 9024028-G-A ***
13453274-C-T 11297598-C-T ***
11643710-A-T ***
14194865-G-T 12074159-G-T ***
13489833-A-T 11334157-A-T ***
9104576-G-T 9266967-G-T ***
8806791-G-T 8938750-G-T ***
15793306-C-A 13681426-C-A ***
7034474-CAAAAA-C 7166433-CAAAAA-C 17×A***
15771220-GA-G 13659340-GA-G ***
15709679-CCACTTACA-C 13597799-CCACTTACA-C ***
8890986-TAAA-T 9022945-TAAA-T 14×A***
9055316-C-A 9217707-C-A ***
9141722-C-A 9304113-C-A ***
17973330-C-A 15861450-C-A ***
18986517-G-A 16874637-G-A ***
9462980-C-A 9625371-C-A ***
6716407-C-A 6848366-C-A ***
15375811-C-A 13263931-C-A ***
9981581-C-A 10143972-C-A ***
10008609-G-A 10171000-G-A ***
19201750-T-C 17089870-T-C ***
18119312-T-C 16007432-T-C ***
15916122-C-T 13804242-C-T ***
10659601-G-T ***
7474374-AAGAG-A,AAG 7606333-AAGAG-A,AAG IR1_L 21×AG***
16762137-C-A 14650257-C-A ***
7667504-C-A 7799463-C-A ***
16926953-C-A 14815073-C-A ***
16971163-C-A 14859283-C-A ***
17012810-TAA-T,TAT 14900930-TAA-T,TAT ***
7994064-G-T 8126023-G-T ***
17082977-CCTTTCTTTCTTT-C,CCTTT 14971097-CCTTTCTTTCTTT-C,CCTTT 15×CTTT***
17192679-A-G 15080799-A-G ***
7154981-C-A 7286940-C-A ***
8047139-C-A 8179098-C-A ***
17348297-CAAAA-C 15236417-CAAAA-C 17×A***
8466723-C-A 8598682-C-A ***
17409751-C-A 15297871-C-A ***
8552728-C-A 8684687-C-A ***
7183503-C-A 7315462-C-A ***
7174273-C-A 7306232-C-A ***
19231319-CTT-C,CT 17119439-CTT-C,CT 24×T***
14986633-T-C 12874701-T-C ***
6347750-G-A 6479709-G-A ***
11642949-G-T ***
13802842-G-T 11682136-G-T ***
13478287-G-T 11322611-G-T ***
11674907-G-A ***
11674905-C-T ***
22204743-G-T 20042857-G-T ***
13216773-C-A 11061097-C-A ***
11655953-C-A ***
22489789-C-A 20327903-C-A DYZ19 ***
13847413-C-A 11726707-C-A ***
17289864-C-A 15177984-C-A ***
13653211-G-T 11497535-G-T ***
22510043-AC-A 20348157-AC-A DYZ19 ***
13470652-G-C 11314976-G-C ***
13224892-C-A 11069216-C-A ***
22739716-CAA-C 20577830-CAA-C 24×A***
13503530-C-A 11347854-C-A ***
13846135-C-A 11725429-C-A ***
10059552-C-A 10221943-C-A ***
19524990-C-A 17413110-C-A ***
21316995-C-A 19155109-C-A ***
14937119-G-A 12825184-G-A ***
10795094-T-C ***
21062741-C-A 18900855-C-A ***
14544378-G-T 12432579-G-T ***
10817785-C-A ***
21200859-C-A 19038973-C-A ***
14322794-G-A 12202088-G-A ***
7791849-C-A 7923808-C-A ***
13194183-T-A 11038507-T-A ***
14186866-T-C 12066160-T-C ***
14151608-CTGATTGCA-C 12030902-CTGATTGCA-C ***
21606128-C-A 19444242-C-A ***
11017927-G-A ***
14039990-C-A 11919284-C-A ***
10796670-T-TCCCCA ***
13194177-T-G 11038501-T-G ***
13805380-T-G 11684674-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

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