Tree Position

R-P312/S116 > Z290 > L21/S145 > DF13 > L513/S215/DF1 > FGC13437 > BY2940 > BY2979 > BY4030

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
201688
BigY2
201688
BigY3
201688
27539514-T-C 25393367-T-C P1_Y2 A+
28817296-G-T 26671149-G-T A*
5084258-A-C 5216217-A-C A*
25893343-A-T 23747196-A-T P1_Y1 ***A*A*
6238420-G-C 6370379-G-C IR3_Dst ***A*A*
20941536-C-T 18779650-C-T P4_Dst A*
19732041-C-G 17620161-C-G P5_Prx ***A*A*
25580746-G-A 23434599-G-A P1_gr1 A*
5646141-CAT-C 5778100-CAT-C +
11667464-G-A +
13892044-CGT-C 11771338-CGT-C +
5657349-G-A 5789308-G-A +
28554288-AGTAT-A 26408141-AGTAT-A +
13892049-GGTA-G 11771343-GGTA-G +
22916884-T-C 20754998-T-C BY11169 YY****+
14074741-C-T 11954035-C-T Y+
5514009-T-C 5645968-T-C +
21588799-C-T 19426913-C-T Y+
4785488-C-A 4917447-C-A +
4484297-T-G 4616256-T-G +
16296737-A-T 14184857-A-T Y+
3081795-C-T 3213754-C-T +
3244598-G-T 3376557-G-T +
10765374-A-G +
13964460-C-CTG 11843754-C-CTG 13×TG*
18639018-A-AGTGT 16527138-A-AGTGT 26×GT*
10805165-TATTCCATTCC-T *
3061098-A-G 3193057-A-G *
4447029-C-CGT 4578988-C-CGT 12×GT*
14604592-T-TC 12492794-T-TC *
22237792-G-T 20075906-G-T DYZ19 ****
22237791-G-A 20075905-G-A DYZ19 ****
22230144-G-A 20068258-G-A DYZ19 ****
17926609-A-G 15814729-A-G **
16003386-T-C 13891506-T-C **
16015649-A-C 13903769-A-C **
16039250-C-A 13927370-C-A **
16052827-C-G 13940947-C-G **
16120011-T-C 14008131-T-C P8_Prx **
16057154-A-G 13945274-A-G **
16062147-A-G 13950267-A-G **
16071769-GC-G 13959889-GC-G **
15952139-C-A 13840259-C-A **
16120014-T-TCC 14008134-T-TCC P8_Prx **
16184096-C-T 14072216-C-T **
15995634-C-T 13883754-C-T **
15786510-C-T 13674630-C-T **
15863117-C-A 13751237-C-A **
15860124-C-A 13748244-C-A **
15843086-A-C 13731206-A-C **
16309306-C-A 14197426-C-A **
15733879-C-CAAA 13621999-C-CAAA 25×A**
15570178-C-T 13458298-C-T **
15541744-C-A 13429864-C-A **
15527730-C-A 13415850-C-A **
15438958-A-G 13327078-A-G **
15430588-C-T 13318708-C-T **
15410546-A-G 13298666-A-G **
15355070-C-A 13243189-C-A **
16276060-T-A 14164180-T-A **
16421112-T-A 14309232-T-A **
16342241-C-A 14230361-C-A **
17264936-A-T 15153056-A-T **
17788085-T-A 15676205-T-A **
17718393-C-A 15606513-C-A **
17717243-A-G 15605363-A-G **
17692024-TA-T 15580144-TA-T **
18071853-A-G 15959973-A-G **
17657980-T-C 15546100-T-C **
17569208-C-A 15457328-C-A **
17561454-C-A 15449574-C-A **
17428380-A-G 15316500-A-G **
15109829-G-A 12997916-G-A **
18143109-A-C 16031229-A-C **
17127218-C-A 15015338-C-A **
16384724-C-A 14272844-C-A **
16987217-C-A 14875337-C-A **
16952547-C-A 14840667-C-A **
16830982-T-C 14719102-T-C **
16786039-C-A 14674159-C-A **
16683200-T-A 14571320-T-A **
16645746-T-C 14533866-T-C **
16507043-T-C 14395163-T-C **
16506064-C-A 14394184-C-A **
16505991-T-TA 14394111-T-TA **
16445863-T-A 14333983-T-A **
17886398-A-T 15774518-A-T **
16384725-T-A 14272845-T-A **
15115580-A-T 13003667-A-T **
14421916-T-G 12301191-T-G **
15109196-T-A 12997283-T-A **
11648450-A-G **
14031950-G-T 11911244-G-T **
14029195-C-T 11908489-C-T **
14017605-TC-T 11896899-TC-T **
13870608-C-A 11749902-C-A **
13855533-A-G 11734827-A-G **
13825033-C-A 11704327-C-A **
13817922-C-T 11697216-C-T **
11674413-G-A **
11672552-A-T **
11669765-G-T **
11651695-G-T **
13696451-G-A 11540775-G-A **
14089027-A-G 11968321-A-G **
13695476-G-A 11539800-G-A **
13617112-A-G 11461436-A-G **
13614182-A-C 11458506-A-C **
13585488-C-A 11429812-C-A **
13545073-C-A 11389397-C-A **
13543796-A-G 11388120-A-G **
13504986-A-G 11349310-A-G **
13486771-C-A 11331095-C-A **
13477841-A-C 11322165-A-C **
13468619-A-G 11312943-A-G **
13441534-A-G 11285858-A-G **
13435411-C-A 11279735-C-A **
14042625-T-C 11921919-T-C **
14089870-C-A 11969164-C-A **
15098119-A-G 12986207-A-G **
14513336-T-G 12401541-T-G **
15011721-C-T 12899809-C-T **
14986373-G-A 12874441-G-A **
14981670-C-A 12869746-C-A **
14858667-T-A 12746733-T-A **
14743546-T-C 12631615-T-C **
14693519-A-G 12581585-A-G **
14571287-A-G 12459487-A-G **
14571286-G-T 12459486-G-T **
14568165-A-G 12456365-A-G **
14557800-A-G 12446001-A-G **
14540558-C-A 12428759-C-A **
14449864-T-A 12329137-T-A **
14123964-T-C 12003258-T-C **
14422007-C-CA 12301282-C-CA **
18253243-C-A 16141363-C-A **
14397542-C-G 12276838-C-G **
14384993-A-T 12264289-A-T **
14373584-T-C 12252880-T-C **
14371866-G-A 12251162-G-A **
14339402-CT-C 12218697-CT-C **
14284553-T-C 12163847-T-C **
14250247-T-C 12129541-T-C **
14232941-C-A 12112235-C-A **
14225638-T-C 12104932-T-C **
14183288-C-A 12062582-C-A **
18190474-T-A 16078594-T-A **
19312363-T-C 17200483-T-C **
18524583-G-T 16412703-G-T P6_Dst **
23501784-T-A 21339898-T-A **
28478813-C-A 26332666-C-A **
28461630-C-A 26315483-C-A **
27958026-G-T 25811879-G-T P1_Y2 **
27889324-C-CT 25743177-C-CT P1_Y2 **
27889318-A-C 25743171-A-C P1_Y2 14×AC**
27815069-A-ACT 25668922-A-ACT P1_Y2 **
26147356-A-AT 24001209-A-AT P1_Y1 **
26055720-T-G 23909573-T-G P1_Y1 **
24267226-C-CGA 22121079-C-CGA P3_b1 **
21783836-T-C **
23773544-C-T 21611658-C-T **
23460530-T-C 21298644-T-C **
28510364-A-T 26364217-A-T **
23355242-G-A 21193356-G-A **
23321872-A-AT 21159986-A-AT **
23225463-C-A 21063577-C-A **
23223413-A-G 21061527-A-G **
23205947-A-T 21044061-A-T **
23188225-T-A 21026339-T-A **
23099901-C-A 20938015-C-A **
23056223-C-A 20894337-C-A **
23052511-G-A 20890625-G-A **
23045421-A-G 20883535-A-G **
22956210-T-C 20794324-T-C **
22880636-C-A 20718750-C-A **
28506263-T-C 26360116-T-C **
28532608-T-A 26386461-T-A **
22655156-A-G 20493270-A-G **
6305913-C-CAA 6437872-C-CAA IR3_Dst 14×A**
26295047-C-A 24148900-C-A P1_Y1 **
26199612-T-TAG 24053465-T-TAG P1_Y1 **
10075911-A-C 10238302-A-C **
10075902-G-T 10238293-G-T **
7450232-C-T 7582191-C-T IR1_L **
5797477-T-A 5929436-T-A **
4459713-C-T 4591672-C-T **
3467689-C-T 3599648-C-T **
3186596-G-A 3318555-G-A **
13460410-T-A 11304734-T-A **
13460382-A-T 11304706-A-T **
10801657-GATTCCATTCCATTCC-G **
13460372-C-G 11304696-C-G **
28598611-A-T 26452464-A-T **
36025-G-A **
28055-G-T **
56875476-C-A **
56835941-C-CTCCCA **
56835923-C-T **
56835912-T-TGCATTTCACC **
56835878-C-G **
56822987-G-T **
28777375-C-A 26631228-C-A **
28755790-G-C 26609643-G-C **
28708350-C-T 26562203-C-T **
28650907-C-A 26504760-C-A **
22876658-T-C 20714772-T-C **
22650979-T-C 20489093-T-C **
18580502-T-A 16468622-T-A **
19248074-A-T 17136194-A-T **
20776248-T-TA 18614362-T-TA P4_Prx **
20019187-T-TA 17907307-T-TA P5_Prx **
19563120-G-A 17451240-G-A **
19542385-T-C 17430505-T-C FGC39757 ****
19530421-C-A 17418541-C-A **
19529142-C-T 17417262-C-T **
19463727-G-T 17351847-G-T **
19418501-C-A 17306621-C-A **
19376188-T-G 17264308-T-G **
19340412-C-A 17228532-C-A **
13257442-C-A 11101766-C-A **
19135161-C-A 17023281-C-A **
21130172-T-A 18968286-T-A **
19127781-C-G 17015901-C-G **
19031386-T-C 16919506-T-C **
18990932-C-A 16879052-C-A **
18980332-G-A 16868452-G-A **
18956138-T-A 16844258-T-A **
18901057-C-T 16789177-C-T **
18880068-C-T 16768188-C-T **
18869888-GT-G 16758008-GT-G **
18858585-C-A 16746705-C-A **
18817894-T-C 16706014-T-C **
18717840-C-T 16605960-C-T **
18710386-T-C 16598506-T-C **
21000916-T-TAA 18839030-T-TAA P4_Dst **
21187278-A-T 19025392-A-T **
22644912-G-C 20483026-G-C **
21979974-T-A 19818088-T-A **
22601657-A-C 20439771-A-C **
22598678-G-C 20436792-G-C **
22598674-A-T 20436788-A-T **
22598663-A-G 20436777-A-G **
22580066-ATCT-A 20418180-ATCT-A **
22297813-A-G 20135927-A-G DYZ19 **
22296114-T-A 20134228-T-A DYZ19 **
22214775-C-A 20052889-C-A **
22166537-T-TC 20004651-T-TC **
22065305-C-A 19903419-C-A **
22010360-C-T 19848474-C-T **
22008475-A-C 19846589-A-C **
21912097-T-A 19750211-T-A **
21187763-T-A 19025877-T-A **
21910089-AT-A 19748203-AT-A **
21709176-T-TG 19547290-T-TG **
21534868-G-A 19372982-G-A **
21522201-A-G 19360315-A-G **
21482756-T-C 19320870-T-C **
21459916-C-A 19298030-C-A **
21435210-T-C 19273324-T-C **
21394844-C-A 19232958-C-A **
21367564-C-A 19205678-C-A **
21221145-A-G 19059259-A-G **
21220942-G-A 19059056-G-A **
21189543-A-T 19027657-A-T **
13316077-C-A 11160401-C-A **
13695495-T-C 11539819-T-C **
13255823-A-G 11100147-A-G **
3343849-C-T 3475808-C-T **
3990659-CGT-C 4122618-CGT-C **
3961514-A-G 4093473-A-G **
3961472-A-G 4093431-A-G **
3951402-C-A 4083361-C-A **
3705438-A-T 3837397-A-T **
3630020-G-T 3761979-G-T **
3593185-A-C 3725144-A-C **
3545771-G-T 3677730-G-T **
3436340-T-A 3568299-T-A **
3436329-A-AT 3568288-A-AT **
3436317-C-T 3568276-C-T **
3436314-C-T 3568273-C-T **
3275778-A-T 3407737-A-T **
4011455-A-T 4143414-A-T **
3274275-C-A 3406234-C-A **
3164974-A-C 3296933-A-C **
3151795-G-T 3283754-G-T **
3000949-G-T 3132908-G-T **
2861458-C-A 2993417-C-A **
2670281-G-T 2802240-G-T **
15684420-C-A 13572540-C-A **
12555747-T-TAA 12×A**
28469525-T-C 26323378-T-C **
10844150-C-T **
16423736-C-A 14311856-C-A **
15864005-C-A 13752125-C-A **
7185570-C-T 7317529-C-T **
3990978-C-A 4122937-C-A **
4017461-C-A 4149420-C-A **
13989099-C-A 11868393-C-A **
5200371-G-T 5332330-G-T **
6692935-T-C 6824894-T-C **
6596127-C-A 6728086-C-A **
6516101-G-A 6648060-G-A **
6330116-A-T 6462075-A-T IR3_Dst **
6287528-A-AG 6419487-A-AG IR3_Dst **
6287522-T-A 6419481-T-A IR3_Dst **
6125992-G-A 6257951-G-A **
5911422-A-G 6043381-A-G **
5830191-T-A 5962150-T-A **
5829870-C-A 5961829-C-A **
5600980-C-A 5732939-C-A **
5455151-C-T 5587110-C-T **
5404803-C-A 5536762-C-A **
5190019-A-G 5321978-A-G **
4129812-C-A 4261771-C-A **
4952112-G-A 5084071-G-A **
4928798-A-T 5060757-A-T **
4926103-T-C 5058062-T-C **
4863348-A-G 4995307-A-G **
4757561-C-A 4889520-C-A **
4561156-T-A 4693115-T-A **
4472315-G-A 4604274-G-A **
4455037-C-T 4586996-C-T **
4370987-C-A 4502946-C-A **
4282640-T-C 4414599-T-C **
4282639-T-A 4414598-T-A **
4212719-T-C 4344678-T-C **
4178032-C-T 4309991-C-T **
3344009-C-A 3475968-C-A **
10794421-C-A **
6819064-G-T 6951023-G-T **
10785274-A-C **
14517621-C-A 12405822-C-A **
17323559-G-A 15211679-G-A **
22340038-A-C 20178152-A-C DYZ19 **
27971714-G-A 25825567-G-A P1_Y2 **
28441832-C-A 26295685-C-A P1_gr2 **
14554491-C-A 12442692-C-A **
13974691-TTC-T 11853985-TTC-T **
10785305-T-TAC **
10785304-A-ACTC **
10785294-A-C **
10785287-C-CAATTT **
10785280-T-TCCACTCTAG **
10785278-C-CA **
10683080-C-T **
9556486-T-TC 9718877-T-TC IR3_Prx **
14061394-C-A 11940688-C-A **
16070695-C-A 13958815-C-A **
14550766-C-A 12438967-C-A **
9832603-G-A 9994994-G-A **
18879969-G-C 16768089-G-C **
21435224-T-G 19273338-T-G **
28559593-C-A 26413446-C-A **
22804131-C-A 20642245-C-A **
22804094-T-C 20642208-T-C **
10075905-A-T 10238296-A-T Y5772 FGC18323 **
16739478-G-A 14627598-G-A **
13486806-C-T 11331130-C-T **
7082834-C-T 7214793-C-T CTS912 **
15157803-C-A 13045890-C-A **
15740683-C-A 13628803-C-A **
16240754-C-A 14128874-C-A **
21754252-G-T **
15600032-C-A 13488152-C-A **
22997770-C-A 20835884-C-A **
4357056-C-A 4489015-C-A **
13234346-C-A 11078670-C-A **
6765640-GTTTTTT-G 6897599-GTTTTTT-G 21×T**
23449205-C-A 21287319-C-A **
14754109-C-A 12642178-C-A **
6751933-C-A 6883892-C-A **
6763961-G-C 6895920-G-C **
7098860-C-T 7230819-C-T **
19531375-C-A 17419495-C-A **
5367034-C-T 5498993-C-T **
14518280-C-A 12406481-C-A **
11037998-C-A **
10987768-C-T **
22876474-C-A 20714588-C-A **
13460459-A-T 11304783-A-T **
3436324-G-A 3568283-G-A **
7239580-C-A 7371539-C-A **
28775374-G-A 26629227-G-A **
16181438-G-A 14069558-G-A **
13696453-T-G 11540777-T-G **
56835950-A-C **
14557797-T-G 12445998-T-G **
10893714-A-G **
13207959-C-A 11052283-C-A **
27958080-AAAAC-A 25811933-AAAAC-A P1_Y2 **
2853514-T-C 2985473-T-C **
6694110-A-T 6826069-A-T **
5294384-C-A 5426343-C-A **
7045376-G-A 7177335-G-A **
10769417-T-A **
10856398-T-C **
10825751-C-T **
10817614-C-A **
10811259-C-A **
10808598-T-A **
10806690-C-A **
10802043-C-A **
10791060-T-C **
10787617-C-G **
10783762-A-G **
10769424-C-G **
10769423-T-G **
10755449-T-C **
10856427-A-C **
10755413-A-ATTCTG **
10685841-G-T **
10683053-GATTCCACTCA-G **
10682461-A-T **
10666245-C-A **
10663652-A-G **
10663651-C-A **
10663649-C-G **
10654386-C-T **
10654383-C-T **
10057470-C-T 10219861-C-T **
10036819-C-A 10199210-C-A **
10031930-C-A 10194321-C-A **
10856402-TTCA-T **
10859367-T-C **
9983352-T-C 10145743-T-C **
10974057-C-G **
13226132-C-T 11070456-C-T **
13198684-G-A 11043008-G-A **
11038112-C-A **
11033272-C-A **
11001543-C-A **
10999383-C-A **
10992903-T-A **
10991908-C-A **
10990660-G-T **
10983950-CATTCCAT-C **
10979164-C-A **
10974093-T-G **
10974037-C-CATTCT **
10862307-T-C **
10964864-T-A **
10964855-T-A **
10964806-C-G **
10949103-C-T **
10948478-T-C **
10946748-C-A **
10937386-A-G **
10926609-C-A **
10921796-T-A **
10886618-C-A **
10873189-A-G **
10871971-C-A **
10862354-C-A **
10021916-G-A 10184307-G-A **
10755406-C-CTGTTA **
8462061-CTG-C 8594020-CTG-C **
7144004-A-G 7275963-A-G **
7110858-C-A 7242817-C-A **
7111494-C-G 7243453-C-G **
7335691-C-G 7467650-C-G **
7140573-G-A 7272532-G-A **
8725281-C-T 8857240-C-T **
8720244-C-A 8852203-C-A **
7143446-C-A 7275405-C-A **
8690482-G-A 8822441-G-A **
7231606-C-A 7363565-C-A **
7107201-C-A 7239160-C-A **
8674093-G-T 8806052-G-T **
7237159-A-G 7369118-A-G **
8661806-C-A 8793765-C-A **
7281013-C-T 7412972-C-T **
9978533-A-T 10140924-A-T **
8295443-G-A 8427402-G-A **
7755187-T-C 7887146-T-C **
7708845-C-A 7840804-C-A **
9040296-C-A 9202687-C-A **
7541500-C-A 7673459-C-A **
9461990-A-G 9624381-A-G **
9077250-A-G 9239641-A-G **
9461864-C-T 9624255-C-T **
9533982-G-A 9696373-G-A BY80182 IR3_Prx **
9927321-A-G 10089712-A-G **
7099915-T-C 7231874-T-C **
9927502-T-C 10089893-T-C **
9077241-G-T 9239632-G-T **
9977399-C-A 10139790-C-A **
7083034-G-A 7214993-G-A **
17869755-T-C 15757875-T-C ***
18249997-T-TTA 16138117-T-TTA ***
5335728-T-A 5467687-T-A ***
13860046-A-T 11739340-A-T ***
13850364-A-T 11729658-A-T ***
13226774-C-A 11071098-C-A ***
22512353-A-G 20350467-A-G DYZ19 ***
13696461-G-A 11540785-G-A ***
10929328-A-G ***
5590564-A-C 5722523-A-C ***
7383851-CAA-C,CAAA 7515810-CAA-C,CAAA 24×A***
6784913-C-A 6916872-C-A ***
13468687-C-A 11313011-C-A ***
14451910-A-G 12331183-A-G ***
18653684-CAAAAAAAA-C 16541804-CAAAAAAAA-C 20×A***
10949085-C-T ***
22427359-C-T 20265473-C-T DYZ19 ******
10999894-C-CGGAAG ***
7108811-C-A 7240770-C-A ***
10075898-T-G 10238289-T-G ***
17318810-C-A 15206930-C-A ***
22426771-C-A 20264885-C-A DYZ19 ***
10980759-C-A ***
25249106-C-T 23102959-C-T P2_r1 ***
15909406-T-C 13797526-T-C ***
5957093-C-T 6089052-C-T ***
17175209-C-T 15063329-C-T ***
3640682-CTCCTTCCTTCCT-C,CTCCTTCCT 3772641-CTCCTTCCTTCCT-C,CTCCTTCCT 14×TCCT***
18853286-C-A 16741406-C-A ***
3394337-CTTTT-C,CTT 3526296-CTTTT-C,CTT 21×T***
3374867-AAAAG-A,AAAAAG 3506826-AAAAG-A,AAAAAG ***
10987795-A-T ***
15662537-C-A 13550657-C-A ***
56839495-A-G ***
23011084-C-A 20849198-C-A ***
21211577-T-C 19049691-T-C ***
23306351-C-A 21144465-C-A ***
9030062-G-A 9192453-G-A ***
16051140-TC-T 13939260-TC-T ***
17840507-C-T 15728627-C-T ***
14766746-A-G 12654815-A-G ***
23061347-C-A 20899461-C-A ***
14766749-C-T 12654818-C-T BY97459 ***
9306428-C-T 9468819-C-T ***
9023296-C-A 9185687-C-A ***
22698982-C-A 20537096-C-A ***
15931415-T-C 13819535-T-C ***
21555240-T-C 19393354-T-C ***
10657411-A-C ***
19517451-C-A 17405571-C-A ***
15212349-C-A 13100435-C-A ***
15864276-C-A 13752396-C-A ***
21985237-G-GA 19823351-G-GA 8×A***
9029807-C-A 9192198-C-A ***
8981020-G-T 9143411-G-T ***
7590958-C-A 7722917-C-A ***
10825631-C-G ***
7617728-A-G 7749687-A-G ***
56830754-CCATTCCATTCTATCC-C,CCATTCCATTCCATCA ***
13801223-C-A 11680517-C-A ***
28726505-C-A 26580358-C-A ***
4557419-A-G 4689378-A-G ***
14250250-C-G 12129544-C-G ***
7270276-CTTTTTTT-C 7402235-CTTTTTTT-C 25×T***
4412310-T-A 4544269-T-A ***
8711740-C-A 8843699-C-A ***
14502249-C-CT 12390454-C-CT 9×T***
25885860-G-GA 23739713-G-GA P1_Y1 ***
4244706-G-A 4376665-G-A ***
27637252-G-T 25491105-G-T P1_Y2 ***
21153068-C-A 18991182-C-A ***
25885859-G-GAAAGAAA 23739712-G-GAAAGAAA P1_Y1 ***
25737150-T-A 23591003-T-A P1_b3 ***
24509437-A-G 22363290-A-G ***
14451915-G-T 12331188-G-T ***
14451919-AT-A 12331192-AT-A ***
25096448-GGAAAGAAAGAAA-G 22950301-GGAAAGAAAGAAA-G g1 20×GAAA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2016881096735879968128099681
Kit: 2016881003245181672588056626
Kit: 2016881458462191919308213566
Used in age calculations1458462191919308213566
Counts of SNPs00
Variant counts last updated 2019-07-19 22:29:32.



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