Tree Position

R-M269 > L23 > Z2103 > Z2106 > Z2108 > Z2110 > CTS7556 > Y20607

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
16910
Manual
Edits
19262385-T-A 17150505-T-A Y55620 YY+
8337009-C-T 8468968-C-T Y20605 YY+
19371980-G-T 17260100-G-T Y20618 YY+
7229837-G-T 7361796-G-T Y45799 YY+
7400729-T-C 7532688-T-C BY3298 YY+
8441335-C-T 8573294-C-T Y47299 YY+
9493762-T-C 9656153-T-C BY41468 +
22362237-C-A 20200351-C-A BY41472 DYZ19 +
23619853-C-T 21457967-C-T Y20345 YY+
23536974-A-G 21375088-A-G Y59305 YY+
14338071-T-C 12217366-T-C Y29085 YY+
18161362-T-C 16049482-T-C Y20617 YY+
19006180-A-C 16894300-A-C Y55195 YY+
22446209-A-T 20284323-A-T DYZ19 ***
6133848-A-AG 6265807-A-AG **
13240391-G-A 11084715-G-A BY41469 **
10093593-T-C 10255984-T-C PF460 **
13449891-T-GTA 11294215-T-GTA **
22215934-T-G 20054048-T-G Y20601 **
10066770-C-A 10229161-C-A **
22365344-G-C 20203458-G-C DYZ19 **
10064272-A-G 10226663-A-G PF448 **
10066800-A-G 10229191-A-G **
22365368-G-T 20203482-G-T DYZ19 **
10016082-A-ATTTC 10178473-A-ATTTC ***
22230192-C-T 20068306-C-T DYZ19 ***
28784745-G-A 26638598-G-A ***
13798900-T-A 11678194-T-A BY25787 ***
13433618-TTT-A 11277942-TTT-A ***
23899856-GAT-G 21737970-GAT-G ***
28784680-G-C 26638533-G-C ***
22357676-T-A 20195790-T-A DYZ19 ***
22454968-A-T 20293082-A-T DYZ19 ***
58821500-T-G 56769371-A-C ***
18340489-TAC-T 16228609-TAC-T P6_Prx 12×AC***
13799916-T-G 11679210-T-G ***
10021351-T-TTC 10183742-T-TTC ***
26594618-A-ATG 24448471-A-ATG P1_g2 16×TG***
13816627-G-GGGAAT 11695921-G-GGGAAT 8×GGAAT***
22232109-T-G 20070223-T-G DYZ19 ***
13700471-GAATGT-G 11544795-GAATGT-G ***
10024425-G-GTCTCTT 10186816-G-GTCTCTT ***
13677782-A-C 11522106-A-C ***
13861502-T-A 11740796-T-A ***
13696849-AGAATG-A 11541173-AGAATG-A 6×GAATG***
22512362-G-A 20350476-G-A Z9711 DYZ19 ***
13812904-A-T 11692198-A-T ***
10021267-CTT-C 10183658-CTT-C ***
10021381-T-TTCTC 10183772-T-TTCTC ***
28784675-G-A 26638528-G-A ***
10037264-CCT-C 10199655-CCT-C ***
13799918-G-A 11679212-G-A ***
10037269-A-ATG 10199660-A-ATG ***
13697944-A-C 11542268-A-C ***
28784693-T-C 26638546-T-C ***
13798908-G-T 11678202-G-T ***
6130291-G-T 6262250-G-T ***
24333456-C-A 22187309-C-A P3_t1 ***
22339219-C-T 20177333-C-T DYZ19 ***
22363151-T-C 20201265-T-C DYZ19 ***
22425158-G-C 20263272-G-C BY41473 DYZ19 ***
22428757-C-T 20266871-C-T DYZ19 ***
22448106-A-C 20286220-A-C DYZ19 ***
22448332-T-G 20286446-T-G DYZ19 ***
24721390-A-G 22575243-A-G P3_b2 ***
22280533-C-G 20118647-C-G DYZ19 ***
24844214-T-A 22698067-T-A IR1_R ***
25072750-A-T 22926603-A-T g1 ***
25342006-T-C 23195859-T-C P2_r1 ***
26728863-T-C 24582716-T-C P1_g2 ***
13674163-AGAATGGAATG-A 11518487-AGAATGGAATG-A 9×GAATG***
19706122-CCAT-C 17594242-CCAT-C P5_Prx 9×CAT***
22289874-T-A 20127988-T-A DYZ19 ***
22233848-T-C 20071962-T-C BY16382 DYZ19 ***
13798884-T-A 11678178-T-A ***
22357640-T-A 20195754-T-A DYZ19 ***
10021259-G-A 10183650-G-A A20503 ***
13798887-T-G 11678181-T-G ***
13798875-AC-A 11678169-AC-A ***
13798891-C-T 11678185-C-T ***
13798907-G-T 11678201-G-T ***
26320717-A-T 24174570-A-T P1_Y1 ***
58977552-ATTCTG-A,ATTCCGTTTCA 56831405-ATTCTG-A,ATTCCGTTTCA ***
22230197-G-C 20068311-G-C DYZ19 ***
22250368-G-T 20088482-G-T DYZ19 ***
13830062-A-C 11709356-A-C ***
18315999-C-T 16204119-C-T P6_Prx ***
20634856-A-C 18472970-A-C P4_Prx ***
22223400-G-A 20061514-G-A DYZ19 ***
22230190-A-C 20068304-A-C DYZ19 ***
22230196-T-A 20068310-T-A DYZ19 ***
13861504-G-C 11740798-G-C ***
13861514-C-G 11740808-C-G ***
13803992-C-A 11683286-C-A ***
22447899-T-G 20286013-T-G BY23273 DYZ19 ***
9991743-G-A 10154134-G-A ***
13868880-T-C 11748174-T-C ***
23899733-T-C 21737847-T-C ***
23899738-G-A 21737852-G-A ***
58844697-A-G 56746174-T-C ***
9959621-A-G 10122012-A-G ***
10023990-A-G 10186381-A-G ***
13141424-A-C 10630910-A-C ***
13867201-C-T 11746495-C-T BY91684 ***
13861584-G-A 11740878-G-A ***
13812321-C-T 11691615-C-T ***
13812328-G-A 11691622-G-A BY90287 ***
13812342-T-C 11691636-T-C ***
13812346-G-T 11691640-G-T ***
22361621-G-T 20199735-G-T DYZ19 ***
23899539-T-A 21737653-T-A ***
23899540-T-A 21737654-T-A ***
25241051-A-C 23094904-A-C FGC54660 P2_r1 ***
13861590-A-G 11740884-A-G ***
13861578-G-C 11740872-G-C ***
9937889-G-C 10100280-G-C ***
10020547-A-G 10182938-A-G ***
13196150-C-T 11040474-C-T ***
13445787-T-A 11290111-T-A ***
13701422-T-A 11545746-T-A ***
13846299-A-C 11725593-A-C ***
9932313-T-C 10094704-T-C ***
13140221-T-C 10629707-T-C BY23698 ***
13709690-T-G 11554014-T-G ***
10020542-A-G 10182933-A-G ***
10015274-G-A 10177665-G-A BY82912 ***
13804057-A-T 11683351-A-T ***
10020537-A-G 10182928-A-G ***
13835250-T-G 11714544-T-G ***
13839260-A-G 11718554-A-G ***
22357511-T-A 20195625-T-A A4171 DYZ19 ***
22358259-G-T 20196373-G-T DYZ19 ***
22454283-C-G 20292397-C-G DYZ19 ***
22488303-T-G 20326417-T-G FGC45830 DYZ19 ***
22362731-T-A 20200845-T-A DYZ19 ***
9937879-C-A 10100270-C-A ***
13451716-CTCCACTCCAGTCCAT-C,CTCCACTCCATTCCAC 11296040-CTCCACTCCAGTCCAT-C,CTCCACTCCATTCCAC ***
13861486-G-A,T 11740780-G-A,T ***
13466819-A-G 11311143-A-G ***
22454322-G-A 20292436-G-A DYZ19 ***
13196228-C-G 11040552-C-G ***
13847523-G-T 11726817-G-T FTB50664 ***
13798954-T-A 11678248-T-A ***
13810617-A-T 11689911-A-T ***
13857444-T-A 11736738-T-A ***
13859637-T-A 11738931-T-A ***
13452064-G-GCCCCACTCCA 11296388-G-GCCCCACTCCA ***
13830075-G-T 11709369-G-T ***
13664673-G-C 11508997-G-C ***
13830077-T-C 11709371-T-C ***
13411042-G-T 11255366-G-T ***
22455082-T-G 20293196-T-G DYZ19 ***
23899859-C-T 21737973-C-T ***
13833281-A-G 11712575-A-G ***
13799879-A-T 11679173-A-T ***
13859575-A-C 11738869-A-C ***
13859635-AC-A 11738929-AC-A ***
23899780-A-C 21737894-A-C ***
10016518-G-A 10178909-G-A ***
13481271-G-A 11325595-G-A ***
13861521-A-C 11740815-A-C ***
13826743-C-T 11706037-C-T BY25773 ***
22454622-G-A 20292736-G-A DYZ19 ***
22315048-C-G 20153162-C-G DYZ19 ***
22222397-A-T 20060511-A-T DYZ19 ***
13830224-G-A 11709518-G-A ***
22446216-A-T 20284330-A-T DYZ19 ***
13860094-T-C 11739388-T-C ***
9304444-CA-C,CG 9466835-CA-C,CG ***
13861540-A-T 11740834-A-T ***
13732061-T-C 11576385-T-C ***
13861581-T-A 11740875-T-A ***
13194816-T-A 11039140-T-A ***
13481270-A-C 11325594-A-C ***
13868310-G-T 11747604-G-T ***
10016080-TA-T 10178471-TA-T ***
13833685-C-T 11712979-C-T ***
22362678-A-T 20200792-A-T DYZ19 ***
13724365-A-T 11568689-A-T ***
13462005-T-A,G 11306329-T-A,G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual14213646-G-A12092940-G-A3A
Manual16050529-T-G13938649-T-G7G

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 169101097734080006638084157
Used in age calculations1097734080006638084157
Counts of SNPs1111
Variant counts last updated 2022-07-30 03:29:49.



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