Cox

FTDNA: 223805, BigY2: 223805
MDKA Birth: England

Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > ZZ40 > S21184 > FGC13557 > A7066

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
223805		BigY2
223805
26340672-G-A 24194525-G-A P1_Y1 ***A*
6210157-A-T 6342116-A-T IR3_Dst ***A*
26228013-T-C 24081866-T-C P1_Y1 ***A*
16123544-G-A 14011664-G-A P8_Prx ***A*
17476369-C-T 15364489-C-T BY115078 YY++
14459511-T-G 12338784-T-G BY95875 YY++
22457670-A-T 20295784-A-T BY25612 DYZ19 ++
21638281-C-T 19476395-C-T BY134348 YY++
28797414-G-C 26651267-G-C BY151576 ***+
19493988-G-T 17382108-G-T BY129534 YY++
19121280-C-A 17009400-C-A BY126478 YY++
18741441-T-C 16629561-T-C BY123557 YY++
17934705-C-A 15822825-C-A BY118531 YY++
17911221-G-C 15799341-G-C BY118365 YY++
16909717-A-G 14797837-A-G BY111028 YY++
22228528-G-A 20066642-G-A BY52098 DYZ19 +
15490365-A-G 13378485-A-G BY101941 YY++
15426816-T-C 13314936-T-C BY101507 YY++
14894820-T-G 12782886-T-G BY98316 YY++
14498103-G-A 12386308-G-A BY96178 YY++
14028827-T-C 11908121-T-C BY92444 YY++
13835514-C-T 11714808-C-T BY90988 ++
5687801-G-A 5819760-G-A BY58793 **+
28779224-G-A 26633077-G-A BY151168 **+
24461307-G-C 22315160-G-C BY150123 Y++
22272992-C-G 20111106-C-G Z7878 DYZ19 ++
24370889-T-G 22224742-T-G BY149411 ++
23599460-G-C 21437574-G-C BY146617 YY++
22996366-G-A 20834480-G-A BY142217 YY++
8336588-T-A 8468547-T-A BY71782 YY++
22930952-C-A 20769066-C-A BY141828 YY++
22639021-C-G 20477135-C-G BY139692 Y++
9860991-G-T 10023382-G-T BY81536 YY++
13211074-A-G 11055398-A-G BY84458 ++
13716870-T-A 11561194-T-A BY89675 ++
22476078-T-A 20314192-T-A DYZ19 ++
22302528-T-A 20140642-T-A DYZ19 ****
14076684-A-G 11955978-A-G **
14065811-C-T 11945105-C-T **
14079505-C-A 11958799-C-A **
14076682-A-G 11955976-A-G **
13723087-T-A 11567411-T-A **
14031879-C-A 11911173-C-A **
13994237-C-A 11873531-C-A **
13896366-C-A 11775660-C-A **
13858389-G-T 11737683-G-T **
11648714-C-A **
13855541-GAA-G 11734835-GAA-G **
13855321-G-T 11734615-G-T **
13854679-A-G 11733973-A-G **
13483751-C-A 11328075-C-A **
13838286-C-T 11717580-C-T **
13801175-A-T 11680469-A-T **
13801146-A-G 11680440-A-G **
11655432-G-T **
11652211-G-T **
56872986-T-C **
14764851-T-C 12652920-T-C **
14177891-G-C 12057185-G-C **
15622385-C-A 13510505-C-A **
15928579-C-A 13816699-C-A **
15928472-C-T 13816592-C-T **
15863008-A-G 13751128-A-G **
15842655-T-C 13730775-T-C **
15842646-AG-A 13730766-AG-A **
15842645-G-A 13730765-G-A **
15842639-G-GC 13730759-G-GC **
15842633-A-G 13730753-A-G **
15834199-G-T 13722319-G-T **
15801637-C-A 13689757-C-A **
15612225-T-A 13500345-T-A **
14184397-G-A 12063691-G-A **
15403642-C-A 13291762-C-A **
15382810-A-G 13270930-A-G **
14961150-A-C 12849225-A-C **
13293630-C-A 11137954-C-A **
14612851-G-T 12501049-G-T **
14593464-TTTTC-T 12481664-TTTTC-T **
14546778-A-G 12434979-A-G **
14517731-T-C 12405932-T-C **
14373486-C-A 12252782-C-A **
14184585-A-G 12063879-A-G **
13464055-C-A 11308379-C-A **
9465295-C-G 9627686-C-G **
11033230-T-A **
7437056-G-T 7569015-G-T **
8342842-T-C 8474801-T-C 10×A**
8052012-A-G 8183971-A-G **
8051984-G-T 8183943-G-T **
7990704-A-T 8122663-A-T **
7897515-T-G 8029474-T-G **
7780725-C-T 7912684-C-T **
7656781-C-A 7788740-C-A **
7646418-A-C 7778377-A-C **
7646410-C-T 7778369-C-T **
7396387-G-A 7528346-G-A **
8666720-C-T 8798679-C-T **
7380881-C-A 7512840-C-A **
7341581-T-G 7473540-T-G **
7341527-T-C 7473486-T-C **
7338659-A-T 7470618-A-T **
7303859-T-C 7435818-T-C **
7107415-G-T 7239374-G-T **
7099239-C-A 7231198-C-A **
7061686-G-T 7193645-G-T **
7043685-G-T 7175644-G-T **
8635424-A-G 8767383-A-G **
8674158-A-G 8806117-A-G **
11021043-T-A **
10794286-T-TACTTTTCCAC **
11021039-C-A **
11021016-A-C **
10999894-C-CTTTTG **
10952486-A-C **
10872655-C-A **
10837555-C-A **
10826903-C-A **
10825285-C-CA **
10800011-C-A **
10785216-T-C **
8677941-A-T 8809900-A-T **
10775383-C-A **
10765370-C-A **
10057907-C-A 10220298-C-A **
9973547-T-A 10135938-T-A **
9941126-G-A 10103517-G-A **
16007330-C-A 13895450-C-A **
9030086-G-T 9192477-G-T **
8840582-C-A 8972541-C-A **
8751586-T-C 8883545-T-C **
8689389-C-A 8821348-C-A **
15942936-A-G 13831056-A-G **
18619045-A-C 16507165-A-C **
16020717-G-C 13908837-G-C **
25592777-G-A 23446630-G-A P1_gr1 **
28517805-C-T 26371658-C-T **
28517804-G-A 26371657-G-A **
28478376-C-A 26332229-C-A **
28460878-A-T 26314731-A-T **
28111783-G-A 25965636-G-A P1_Y2 **
27562009-G-A 25415862-G-A P1_Y2 **
26248885-A-C 24102738-A-C P1_Y1 **
26025623-T-TG 23879476-T-TG P1_Y1 **
25995158-A-C 23849011-A-C P1_Y1 **
25088294-A-T 22942147-A-T g1 **
28517824-A-G 26371677-A-G **
24278021-GCA-G 22131874-GCA-G P3_b1 **
23952969-G-A 21806822-G-A **
23875065-A-G 21713179-A-G **
23807595-A-G 21645709-A-G **
23612513-C-A 21450627-C-A **
23565715-C-A 21403829-C-A **
23435907-C-A 21274021-C-A **
23345612-C-A 21183726-C-A **
23198854-GT-G 21036968-GT-G **
28517819-C-T 26371672-C-T **
28605682-T-C 26459535-T-C **
23137539-T-C 20975653-T-C **
56839610-CA-C **
56872978-C-T **
56872975-G-A **
56872973-A-G **
56872969-C-T **
56849145-T-G **
56840325-G-T **
56839646-G-GAGGTGA **
56839641-T-C **
56839634-G-A **
56839302-A-C **
28605800-C-A 26459653-C-A **
56828231-A-T **
56827204-T-C **
28815990-G-A 26669843-G-A **
28763363-A-G 26617216-A-G **
28713355-C-A 26567208-C-A **
28661497-C-A 26515350-C-A **
28658344-A-T 26512197-A-T **
28624293-C-A 26478146-C-A **
28621362-C-A 26475215-C-A **
23198015-G-C 21036129-G-C **
22802288-C-A 20640402-C-A **
16037476-C-A 13925596-C-A **
17580210-T-A 15468330-T-A **
18951896-T-A 16840016-T-A **
18864870-C-T 16752990-C-T **
6847987-G-C 6979946-G-C **
18614384-A-G 16502504-A-G **
18565284-AT-A 16453404-AT-A **
18401582-C-A 16289702-C-A P6_Gap **
18150641-G-T 16038761-G-T **
18098989-C-A 15987109-C-A **
17940045-C-T 15828165-C-T **
17502563-G-T 15390683-G-T **
19246033-C-T 17134153-C-T **
17445443-C-A 15333563-C-A **
17297420-A-G 15185540-A-G **
17098997-A-T 14987117-A-T **
17006681-C-A 14894801-C-A **
16931850-G-T 14819970-G-T **
16743004-T-C 14631124-T-C **
16673040-C-A 14561160-C-A **
16354566-C-A 14242686-C-A **
16316767-C-A 14204887-C-A **
18985964-G-A 16874084-G-A **
19295006-C-A 17183126-C-A **
22774820-T-C 20612934-T-C **
21219615-C-A 19057729-C-A **
22241626-A-G 20079740-A-G DYZ19 **
22200995-C-G 20039109-C-G **
22084784-C-G 19922898-C-G **
21993994-T-C 19832108-T-C **
21862228-C-A 19700342-C-A **
21615993-G-A 19454107-G-A **
21446361-C-A 19284475-C-A **
21438380-A-G 19276494-A-G **
21389773-C-A 19227887-C-A **
21167382-A-G 19005496-A-G **
19444209-C-A 17332329-C-A **
21166871-C-A 19004985-C-A **
21141570-C-A 18979684-C-A **
20696412-A-T 18534526-A-T P4_Prx **
20137241-G-T 18025361-G-T P5_Dst **
19992594-G-T 17880714-G-T P5_Prx **
19887069-A-G 17775189-A-G P5_Prx **
19874223-T-C 17762343-T-C P5_Prx **
19622143-C-T 17510263-C-T P5_Prx **
19575796-C-A 17463916-C-A P5_Prx **
19529398-C-A 17417518-C-A **
6919880-C-T 7051839-C-T **
6213921-G-A 6345880-G-A IR3_Dst **
6741358-T-C 6873317-T-C **
10656004-C-A **
27960984-A-G 25814837-A-G P1_Y2 **
18923259-C-A 16811379-C-A **
14589449-C-A 12477649-C-A **
14376304-C-A 12255600-C-A **
21095731-C-A 18933845-C-A **
17676395-C-A 15564515-C-A **
7013381-C-A 7145340-C-A **
19535691-C-A 17423811-C-A **
16906853-C-A 14794973-C-A **
7111850-C-A 7243809-C-A **
10744364-G-A **
21285190-AAAAT-A 19123304-AAAAT-A 4×AAAT**
11005541-T-A **
20107299-GAAAA-G 17995419-GAAAA-G P5_Dst 24×A**
18631801-C-A 16519921-C-A **
26415676-CAAAAAAAA-C 24269529-CAAAAAAAA-C P1_Y1 20×A**
21082046-C-A 18920160-C-A **
15157307-C-A 13045394-C-A **
7099219-C-A 7231178-C-A **
22854931-C-T 20693045-C-T **
10952510-C-A **
14447996-C-A 12327269-C-A **
7303684-C-A 7435643-C-A **
17478792-C-A 15366912-C-A **
8736324-C-A 8868283-C-A **
14432014-C-A 12311287-C-A Y91417 **
18985025-C-A 16873145-C-A **
14062008-TACAAAA-T 11941302-TACAAAA-T **
4302132-C-A 4434091-C-A **
10952509-A-T **
22811205-C-A 20649319-C-A **
13857501-G-A 11736795-G-A **
13857496-G-A 11736790-G-A **
13857491-G-A 11736785-G-A **
28719849-C-A 26573702-C-A **
7048054-C-A 7180013-C-A **
15223039-C-A 13111125-C-A **
7199476-T-G 7331435-T-G **
17222780-C-A 15110900-C-A **
10952516-ATTTCT-A **
16478198-GAAAAAA-G 14366318-GAAAAAA-G 16×A**
14701445-C-A 12589511-C-A **
11643722-T-A **
56841792-G-A **
6776326-T-G 6908285-T-G **
6776325-G-T 6908284-G-T **
13692764-A-T 11537088-A-T **
10999915-A-T **
11021028-C-T **
11021017-A-T **
11643704-G-GATTCA **
24359586-AC-A 22213439-AC-A **
13857543-ATG-A 11736837-ATG-A **
9735418-G-A 9897809-G-A BY50742 IR3_Prx **
22365394-C-T 20203508-C-T DYZ19 **
9316054-C-G 9478445-C-G **
14253783-A-C 12133077-A-C **
4764839-GTA-G 4896798-GTA-G **
13857481-G-A 11736775-G-A **
13801168-G-T 11680462-G-T **
13461028-G-A 11305352-G-A **
22517153-C-A 20355267-C-A **
19532481-C-A 17420601-C-A ZS7976 **
13488916-T-A 11333240-T-A **
10794243-C-A **
13487743-TC-T 11332067-TC-T **
13487741-C-CT 11332065-C-CT **
15264745-AG-A 13152834-AG-A **
10830887-AATTCC-A **
28548600-C-A 26402453-C-A **
19125074-C-A 17013194-C-A **
15866804-C-A 13754924-C-A **
2708167-A-C 2840126-A-C **
14909660-C-A 12797727-C-A **
2708163-T-C 2840122-T-C **
2708160-A-G 2840119-A-G **
2708159-C-T 2840118-C-T **
18201561-C-CAA 16089681-C-CAA 14×A**
11003745-C-CTAAACTCCATTCTGT **
2906679-C-A 3038638-C-A **
8649803-G-A 8781762-G-A **
7329392-C-A 7461351-C-A **
10958621-C-A **
7646416-TAAAAAAA-T 7778375-TAAAAAAA-T 14×A**
4470420-T-C 4602379-T-C **
10036017-C-A 10198408-C-A **
2773458-G-A 2905417-G-A **
5420605-T-A 5552564-T-A **
5609546-T-C 5741505-T-C **
5860148-G-T 5992107-G-T **
2697388-C-A 2829347-C-A **
8167874-C-A 8299833-C-A **
7648995-C-A 7780954-C-A **
7258554-C-A 7390513-C-A **
11032913-C-A **
10896283-C-A **
4438429-T-A 4570388-T-A **
21934633-C-A 19772747-C-A **
18987140-C-A 16875260-C-A **
5999613-G-A 6131572-G-A **
2799501-C-A 2931460-C-A **
4898094-A-G 5030053-A-G **
11643172-C-A **
4567199-C-T 4699158-C-T **
4217064-C-A 4349023-C-A **
3877725-G-T 4009684-G-T **
4540320-A-G 4672279-A-G **
3716844-T-C 3848803-T-C **
3603192-C-A 3735151-C-A **
4540498-T-A 4672457-T-A **
3511076-G-T 3643035-G-T **
4862587-G-A 4994546-G-A **
4700709-A-T 4832668-A-T **
4764922-G-A 4896881-G-A **
3374197-G-T 3506156-G-T **
3274809-G-T 3406768-G-T **
2832764-G-A 2964723-G-A **
2824418-T-C 2956377-T-C **
2810366-A-ATTT 2942325-A-ATTT 23×T**
7204747-C-A 7336706-C-A **
13454484-C-A 11298808-C-A **
11020998-T-C **
6310858-C-CAA 6442817-C-CAA IR3_Dst **
14475861-C-A 12355130-C-A **
22132345-C-A 19970459-C-A **
13855537-AATG-A 11734831-AATG-A **
7623588-C-T 7755547-C-T **
9978999-C-A 10141390-C-A **
14391763-C-A 12271059-C-A **
6778872-C-A 6910831-C-A **
16528154-C-A 14416274-C-A **
10952483-T-C **
27903143-T-TC 25756996-T-TC P1_Y2 **
8075276-C-A 8207235-C-A **
7101493-G-C 7233452-G-C **
6355675-G-T 6487634-G-T **
6674719-G-A 6806678-G-A **
21922122-C-A 19760236-C-A **
15873520-C-A 13761640-C-A **
6149840-T-C 6281799-T-C IR3_Dst **
4552817-C-T 4684776-C-T **
21752236-G-T **
14324313-C-A 12203607-C-A **
18996432-C-A 16884552-C-A **
11649437-G-T **
21658510-C-A 19496624-C-A **
25038146-C-A 22891999-C-A g1 ***
58977261-T-C 56831114-T-C ***
9174435-C-T 9336826-C-T ***
20016368-C-T 17904488-C-T P5_Prx ***
21750890-G-A ***
7409829-G-T 7541788-G-T ***
22244327-T-G 20082441-T-G DYZ19 ***
22288846-T-A 20126960-T-A DYZ19 ***
28760916-G-T 26614769-G-T ***
58974916-C-A 56828769-C-A ***
56834732-T-C ***
25206738-G-A 23060591-G-A g1 ***
22449836-T-C 20287950-T-C DYZ19 ***
26183615-G-A 24037468-G-A P1_Y1 ***
22466383-T-A 20304497-T-A DYZ19 ***
13726994-G-A 11571318-G-A ***
22466391-G-C 20304505-G-C DYZ19 ***
22466414-T-C 20304528-T-C DYZ19 ***
27618163-G-T 25472016-G-T P1_Y2 ***
58977922-G-A 56831775-G-A ***
28788010-G-A 26641863-G-A A16211 ***
24817460-C-T 22671313-C-T P3_b2 ***
9329011-C-T 9491402-C-T ***
25015275-CA-C 22869128-CA-C g1 ***
28794113-G-T 26647966-G-T ***
28788008-G-T 26641861-G-T ***
14295030-TA-T 12174324-TA-T 9×A***
21189933-C-A 19028047-C-A ***
10657355-C-A ***
3606085-C-A 3738044-C-A ***
10789359-C-T ***
18019103-C-A 15907223-C-A ***
23327296-CTTT-C 21165410-CTTT-C 11×T***
13258844-C-A 11103168-C-A ***
20802642-A-AAT 18640756-A-AAT P4_Gap ***
8650130-G-A 8782089-G-A ***
16253979-G-T 14142099-G-T ***
6734680-CTTTT-C,CTT 6866639-CTTTT-C,CTT 21×T***
19004559-C-A 16892679-C-A ***
10789353-T-TCAAAG ***
15527480-C-A 13415600-C-A ***
22786919-C-A 20625033-C-A ***
13988626-C-A 11867920-C-A ***
15618030-A-T 13506150-A-T ***
10987208-A-AATTCACTCCG,T ***
13489735-G-T 11334059-G-T ***
10657324-C-A ***
14488506-TCATG-T 12367775-TCATG-T ***
18659653-T-C 16547773-T-C ***
19040295-C-A 16928415-C-A ***
23495813-T-A 21333927-T-A ***
21250675-C-A 19088789-C-A ***
16275908-G-T 14164028-G-T ***
10789335-C-T ***
8649367-C-A 8781326-C-A ***
22526299-A-T 20364413-A-T ***
17922524-C-A 15810644-C-A ***
10987198-A-T ***
6960237-TA-T,TAA 7092196-TA-T,TAA 15×A***
3286227-G-A 3418186-G-A ***
10756857-T-C ***
7935996-C-A 8067955-C-A ***
9403260-C-A 9565651-C-A ***
2772701-C-A 2904660-C-A ***
10008661-C-A 10171052-C-A ***
10016628-C-A 10179019-C-A ***
10987192-C-T ***
10632504-C-T ***
10654946-A-G ***
10657280-C-T ***
10756850-C-G ***
13487916-C-T 11332240-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 2238051041733474906527561244
Kit: 223805926381975924497530932
Used in age calculations1041733475924497561244
Counts of SNPs2020
Variant counts last updated 2018-05-28 19:51:03.


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