Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > DF21/S192 > FGC3213 > ZZ1 > S3058 > S424 > S426 > S190 > FGC3215 > ZZ23 > Y12464 > ZZ25 > Z17998 > Y16002 > Z17999 > Z18000 > Z36749 > Z36748 > Z36750 > ZZ69 > Z36753 > Y17479 > Y17622 > 14642-C-T

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
385951
BigY2
385951
Manual
Edits
22309918-T-A 20148032-T-A DYZ19 **
22309915-C-A 20148029-C-A DYZ19 **
22247356-T-G 20085470-T-G DYZ19 **
15380038-G-T 13268158-G-T Y15104Y15113 **
4416688-C-A 4548647-C-A **
16003334-G-A 13891454-G-A CTS5076 **
17737618-C-A 15625738-C-A 14×A**
7340319-G-T 7472278-G-T **
21786287-C-A 19624401-C-A **
13859593-C-T 11738887-C-T DYZ17 **
13859590-G-C 11738884-G-C DYZ17 **
58979097-ATTGCATTCCC-A 56832950-ATTGCATTCCC-A **
22247360-G-A 20085474-G-A DYZ19 **
18006654-CTT-C 15894774-CTT-C P7_Gap 12×T**
13474498-C-G 11318822-C-G **
24256238-T-C 22110091-T-C BY226014 P3_b1 **
22309893-C-T 20148007-C-T DYZ19 **
13474569-A-T 11318893-A-T **
14660568-C-T 12548633-C-T **
2670151-T-A 2802110-T-A **
2670172-T-C 2802131-T-C **
2670174-C-A 2802133-C-A **
2769135-G-A 2901094-G-A **
2791749-C-A 2923708-C-A **
2855454-A-C 2987413-A-C **
2926407-C-A 3058366-C-A **
3091717-T-A 3223676-T-A **
3131675-C-T 3263634-C-T **
3164637-G-T 3296596-G-T **
3272503-C-A 3404462-C-A **
3347851-C-A 3479810-C-A **
3414498-G-T 3546457-G-T **
3429300-G-T 3561259-G-T **
3627369-T-A 3759328-T-A **
3633177-C-G 3765136-C-G **
3664027-G-A 3795986-G-A **
3688943-C-A 3820902-C-A **
3725700-C-A 3857659-C-A **
3817919-AT-A 3949878-AT-A 8×T**
3831024-C-A 3962983-C-A **
3834111-C-A 3966070-C-A **
3834670-C-A 3966629-C-A **
3951733-C-A 4083692-C-A **
3990627-C-A 4122586-C-A **
3991055-C-A 4123014-C-A **
4080749-T-C 4212708-T-C **
4080776-G-C 4212735-G-C **
4093404-C-A 4225363-C-A **
4100733-C-A 4232692-C-A **
4103736-C-A 4235695-C-A **
4133900-C-A 4265859-C-A **
4133913-C-A 4265872-C-A **
4188052-C-A 4320011-C-A **
4271424-G-T 4403383-G-T **
4288455-A-G 4420414-A-G **
4381904-C-A 4513863-C-A **
4412480-A-G 4544439-A-G **
4580629-C-A 4712588-C-A **
4700289-C-A 4832248-C-A **
4900837-T-G 5032796-T-G **
5059693-A-C 5191652-A-C **
5070558-C-A 5202517-C-A **
5084651-T-C 5216610-T-C **
5189271-G-A 5321230-G-A **
5243646-C-A 5375605-C-A **
5267514-G-T 5399473-G-T **
5275492-G-T 5407451-G-T **
5380329-T-C 5512288-T-C **
5380334-CA-T 5512293-CA-T **
5380346-C-T 5512305-C-T **
5380361-TA-T 5512320-TA-T **
5447081-C-A 5579040-C-A **
5449237-T-A 5581196-T-A **
5522504-C-A 5654463-C-A **
5522671-C-A 5654630-C-A **
5562249-A-G 5694208-A-G **
5615058-G-C 5747017-G-C **
5710505-C-A 5842464-C-A **
5801356-G-T 5933315-G-T **
5828967-ACACAC-A 5960926-ACACAC-A **
5851243-T-C 5983202-T-C **
5905391-C-A 6037350-C-A **
5926693-G-T 6058652-G-T **
5969750-C-A 6101709-C-A **
6401442-C-T 6533401-C-T **
6401443-A-G 6533402-A-G **
6401448-C-A 6533407-C-A **
6401457-C-A 6533416-C-A **
6445096-CT-C 6577055-CT-C **
6505210-T-G 6637169-T-G **
6516701-G-C 6648660-G-C **
6516737-T-C 6648696-T-C **
6519575-T-G 6651534-T-G **
6523885-C-A 6655844-C-A **
6585055-C-A 6717014-C-A **
6606781-G-T 6738740-G-T **
6654862-G-T 6786821-G-T **
6730302-CT-C 6862261-CT-C **
6748774-G-A 6880733-G-A **
6752141-A-C 6884100-A-C **
6752144-A-C 6884103-A-C **
6752156-TA-T 6884115-TA-T **
6771605-C-A 6903564-C-A **
6771617-G-C 6903576-G-C **
6771630-C-A 6903589-C-A **
6882382-C-A 7014341-C-A **
6918443-G-T 7050402-G-T **
6948230-C-A 7080189-C-A **
7080976-T-G 7212935-T-G **
7080997-T-A 7212956-T-A **
7081005-C-G 7212964-C-G **
7081077-T-A 7213036-T-A **
7081103-A-G 7213062-A-G **
7081287-T-C 7213246-T-C **
7101004-T-A 7232963-T-A **
7141005-C-A 7272964-C-A **
7142622-C-A 7274581-C-A **
7148278-G-T 7280237-G-T **
7150656-C-G 7282615-C-G **
7155701-C-A 7287660-C-A **
7160782-A-G 7292741-A-G **
7181876-G-C 7313835-G-C **
7200599-C-A 7332558-C-A **
7201556-T-C 7333515-T-C **
7208315-C-A 7340274-C-A **
7237948-C-A 7369907-C-A **
7241132-C-A 7373091-C-A **
7254020-T-C 7385979-T-C **
7254204-A-T 7386163-A-T **
7255447-C-A 7387406-C-A **
7303281-C-A 7435240-C-A **
7310565-G-A 7442524-G-A **
7384573-G-A 7516532-G-A **
7391854-C-A 7523813-C-A **
7471060-C-A 7603019-C-A IR1_L **
7633119-C-A 7765078-C-A **
7757025-A-G 7888984-A-G **
7764453-AT-A 7896412-AT-A 9×T**
7774191-C-A 7906150-C-A **
7781053-C-A 7913012-C-A **
7783080-A-C 7915039-A-C **
7898373-C-G 8030332-C-G **
7986294-G-T 8118253-G-T **
8067260-A-T 8199219-A-T **
8095480-T-A 8227439-T-A **
8269992-C-A 8401951-C-A FT245570 **
8295451-G-A 8427410-G-A **
8295456-A-G 8427415-A-G **
8295458-C-T 8427417-C-T **
8295470-A-G 8427429-A-G **
8295473-A-G 8427432-A-G **
8295558-C-A 8427517-C-A **
8295633-A-G 8427592-A-G **
8389746-T-C 8521705-T-C **
8710002-C-A 8841961-C-A **
8776582-C-A 8908541-C-A **
8807047-A-G 8939006-A-G **
9116548-G-T **
9117510-C-CT **
9077149-G-T 9239540-G-T **
9221695-A-ATATATATG 9384086-A-ATATATATG **
9313809-C-A 9476200-C-A **
9501335-A-C 9663726-A-C **
9501336-G-A 9663727-G-A **
9623254-C-A 9785645-C-A IR3_Prx **
9658751-A-AGGCTT 9821142-A-AGGCTT IR3_Prx **
9748236-T-TCTGTC 9910627-T-TCTGTC **
9825893-C-A 9988284-C-A **
9940518-C-T 10102909-C-T **
9941033-C-A 10103424-C-A **
9968415-A-G 10130806-A-G **
10023483-G-A 10185874-G-A **
10032580-T-A 10194971-T-A **
10081514-A-C 10243905-A-C **
10081515-A-T 10243906-A-T **
10081531-A-G 10243922-A-G **
10081550-T-G 10243941-T-G **
10081553-C-T 10243944-C-T **
10081564-T-C 10243955-T-C FT427364 **
10081569-G-A 10243960-G-A **
10653421-C-A **
10656995-G-T **
10684662-C-A **
10685569-C-A **
10747033-C-A **
10753132-C-G **
10755302-C-A **
10763067-A-G **
10778933-T-C **
10785162-C-G **
10785183-C-G **
10785310-T-TTCCAC **
10787996-A-G **
10790978-C-T **
10792934-C-A **
10799604-C-T **
10799637-C-T **
10800410-C-A **
10800420-C-A **
10802271-C-A **
10807037-G-A **
10807040-CTCCAT-C **
10811601-C-A **
10817418-C-A **
10818980-C-G **
10818989-T-A **
10818997-T-G **
10818998-C-T **
10821211-A-G **
10828294-C-A **
10830639-T-C **
10841945-A-T **
10841957-T-TC **
10841999-C-CGCTCA **
10842664-G-A **
10847794-C-A **
10880434-C-G **
10884878-ATTCTC-A **
10885083-A-G **
10889907-T-G **
10889911-A-T **
10898325-C-A **
10898383-C-A **
10901738-T-G **
10901814-A-G **
10914548-G-T **
10916828-G-T **
10931732-T-C **
10935521-C-T **
10939569-C-A **
10940342-A-T **
10940343-C-A **
10940366-C-A **
10940369-T-TCCGTA **
10940383-C-G **
10940386-C-A **
10944351-G-A BY553FGC79164 **
10944357-C-T **
10944652-T-A **
10946546-C-T **
10946638-C-A **
10946723-C-A **
10947289-GTTCCATTCCATTCCACTCCATTCTATTCCACTCCACCCAA-G **
10947310-T-C **
10947325-C-CT **
10947328-A-ACTCC **
10947339-A-T **
10959190-G-C **
10964520-A-G **
10964523-A-G **
10965218-C-A **
10970716-C-A **
10970890-G-GA **
10970894-CT-C **
10970909-A-C FT438617 **
10988754-C-A **
10989069-C-T **
10989075-T-A **
10989108-ACACCACTG-A **
10989118-A-T **
10989121-CCACTCCA-C **
10989171-C-T **
10989181-C-T **
10989184-C-A **
11003605-C-A **
11004034-C-A **
11004423-T-C **
11005962-C-A **
11006625-GCATTC-G **
11011869-C-A **
11011920-C-A **
11014014-C-A **
11015175-C-G **
11015219-C-T **
11015222-C-T **
11015226-A-AC **
11015635-T-A **
11018726-C-A **
11019123-C-A **
11019544-G-T **
11020925-C-A **
11026073-C-T **
11026076-T-A **
11026085-C-A **
11026090-T-G **
11031023-C-A **
11031681-C-A **
11032940-C-G **
13218661-C-A 11062985-C-A **
13236645-C-A 11080969-C-A **
13255973-C-A 11100297-C-A **
13280638-C-A 11124962-C-A **
13298190-C-A 11142514-C-A **
13311846-A-C 11156170-A-C **
13319154-C-A 11163478-C-A **
13354858-TAA-T 11199182-TAA-T 14×A**
13417309-C-A 11261633-C-A **
13460987-G-T 11305311-G-T **
13461027-G-C 11305351-G-C **
13474503-G-A 11318827-G-A **
13474509-T-G 11318833-T-G **
13474511-A-T 11318835-A-T **
13474529-G-C 11318853-G-C **
13474545-CCG-C 11318869-CCG-C **
13474549-C-CAGT 11318873-C-CAGT **
13474553-TGG-T 11318877-TGG-T **
13474578-T-A 11318902-T-A **
13485438-A-AGTCT 11329762-A-AGTCT **
13494670-C-A 11338994-C-A **
13494710-C-A 11339034-C-A **
13512569-C-A 11356893-C-A **
13512879-C-A 11357203-C-A **
13696473-C-G 11540797-C-G DYZ17 **
13705474-A-C 11549798-A-C DYZ17 10×GGAAT**
13705483-A-ATGTAG 11549807-A-ATGTAG DYZ17 **
11645430-A-C DYZ17 **
11645447-T-G DYZ17 **
11645449-T-A DYZ17 **
11645462-A-G DYZ17 **
11645468-C-A DYZ17 **
11645920-A-G DYZ17 **
11656962-T-C DYZ17 **
11658892-C-G DYZ17 **
11658895-C-T DYZ17 **
11658896-A-G DYZ17 **
11658898-C-A DYZ17 **
11662556-G-A FT92557 DYZ17 **
11662560-A-G DYZ17 **
11662566-A-G DYZ17 **
11662571-A-G DYZ17 **
11663349-G-C DYZ17 **
11663350-T-A DYZ17 **
11663352-G-T DYZ17 **
11663359-A-T DYZ17 **
11663371-G-T DYZ17 **
11666361-T-A DYZ17 **
11666368-G-T DYZ17 **
13801151-A-C 11680445-A-C DYZ17 **
13801153-G-T 11680447-G-T DYZ17 **
13809360-A-G 11688654-A-G DYZ17 **
13809469-G-T 11688763-G-T DYZ17 **
13847209-AAATGGAATGGAATGGAATGGACTCAAATGG-A 11726503-AAATGGAATGGAATGGAATGGACTCAAATGG-A DYZ17 4×AATGG**
13855531-G-C 11734825-G-C DYZ17 **
13855546-G-A 11734840-G-A DYZ17 **
13859598-T-A 11738892-T-A DYZ17 **
13859620-T-C 11738914-T-C DYZ17 **
13859629-C-T 11738923-C-T DYZ17 **
13859645-G-C 11738939-G-C DYZ17 **
13872132-C-A 11751426-C-A **
13874711-G-C 11754005-G-C **
13874731-A-C 11754025-A-C **
13896956-C-A 11776250-C-A **
13907584-C-A 11786878-C-A **
13927318-C-A 11806612-C-A **
13927422-A-C 11806716-A-C **
13945279-A-T 11824573-A-T **
13999207-C-A 11878501-C-A **
14022976-A-T 11902270-A-T **
14041632-C-T 11920926-C-T **
14047795-A-G 11927089-A-G **
14147905-C-G 12027199-C-G **
14212305-C-A 12091599-C-A **
14250570-T-G 12129864-T-G **
14250580-G-C 12129874-G-C **
14253211-C-A 12132505-C-A **
14289662-C-T 12168956-C-T **
14295541-C-CGT 12174835-C-CGT 8×GT**
14296979-C-A 12176273-C-A **
14366508-C-A 12245803-C-A **
14366520-G-A 12245815-G-A **
14395642-C-A 12274938-C-A **
12370836-C-A **
14493445-T-C 12381642-T-C **
14505902-G-C 12394107-G-C **
14511895-T-C 12400100-T-C **
14517187-AGTTGG-A 12405388-AGTTGG-A **
14524985-T-C 12413186-T-C **
14524989-T-C 12413190-T-C **
14533369-C-A 12421570-C-A **
14609792-T-C 12497994-T-C **
14618205-C-A 12506403-C-A **
14619453-C-A 12507651-C-A **
14635168-A-G 12523237-A-G **
14660519-C-T 12548584-C-T **
14660531-T-A 12548596-T-A **
14660533-T-G 12548598-T-G **
14660537-G-T 12548602-G-T **
14660545-C-A 12548610-C-A **
14660575-T-C 12548640-T-C **
14660589-C-A 12548654-C-A **
14660590-A-G 12548655-A-G **
14660592-G-A 12548657-G-A **
14660598-T-A 12548663-T-A **
14660628-TTG-T 12548693-TTG-T **
14660632-A-ACG 12548697-A-ACG **
14660638-T-C 12548703-T-C **
14660644-C-A 12548709-C-A **
14660645-C-A 12548710-C-A **
14660660-T-C 12548725-T-C **
14689304-C-A 12577370-C-A **
14693782-T-A 12581848-T-A **
14715379-TC-T 12603446-TC-T **
14716436-G-T 12604504-G-T **
14725843-T-A 12613911-T-A **
14736258-T-C 12624326-T-C **
14858888-T-C 12746954-T-C **
14858889-G-A 12746955-G-A **
14858889-G-GA 12746955-G-GA **
14858910-G-A 12746976-G-A **
14858913-T-G 12746979-T-G **
14858918-C-T 12746984-C-T **
14858919-A-G 12746985-A-G **
14908884-G-A 12796951-G-A **
14909215-T-C 12797282-T-C **
14909377-C-A 12797444-C-A **
14990883-G-T 12878968-G-T **
15285896-C-A 13173995-C-A **
15392226-G-A 13280346-G-A FT397126 **
15394681-C-A 13282801-C-A **
15626548-C-T 13514668-C-T **
15626739-G-T 13514859-G-T **
15684606-T-C 13572726-T-C **
15684607-G-A 13572727-G-A **
15684629-T-C 13572749-T-C **
15684630-G-A 13572750-G-A **
15728815-G-A 13616935-G-A **
15758790-C-A 13646910-C-A **
15815323-C-G 13703443-C-G **
15944214-G-A 13832334-G-A **
15971487-T-C 13859607-T-C **
15971517-C-G 13859637-C-G **
15988062-C-A 13876182-C-A **
16050421-C-A 13938541-C-A **
16058751-C-A 13946871-C-A **
16059839-C-A 13947959-C-A **
16060275-C-A 13948395-C-A **
16064739-G-T 13952859-G-T **
16092544-G-T 13980664-G-T **
16121558-T-TGACAG 14009678-T-TGACAG P8_Prx **
16241674-C-A 14129794-C-A **
16267279-C-A 14155399-C-A **
16267280-A-G 14155400-A-G **
16351678-T-A 14239798-T-A **
16384687-C-A 14272807-C-A **
16430049-C-A 14318169-C-A **
16432756-AT-G 14320876-AT-G **
16432765-A-G 14320885-A-G **
16503684-T-C 14391804-T-C **
16507040-C-A 14395160-C-A **
16559936-C-A 14448056-C-A **
16573979-C-T 14462099-C-T FT257011 **
16573981-A-C 14462101-A-C **
16573982-T-C 14462102-T-C **
16607768-C-A 14495888-C-A **
16620108-C-A 14508228-C-A **
16623547-A-T 14511667-A-T **
16654574-C-A 14542694-C-A **
16703576-G-C 14591696-G-C **
16707833-G-T 14595953-G-T **
16745099-A-ACTGT 14633219-A-ACTGT **
16779116-A-G 14667236-A-G **
16849486-C-A 14737606-C-A **
16926744-A-G 14814864-A-G **
16930107-C-A 14818227-C-A **
17125281-T-G 15013401-T-G **
17203327-CTTTTTTT-C 15091447-CTTTTTTT-C 21×T**
17300713-G-A 15188833-G-A **
17300717-G-A 15188837-G-A **
17372284-G-C 15260404-G-C **
17440731-G-A 15328851-G-A **
17598000-C-A 15486120-C-A **
17601110-G-T 15489230-G-T **
17684387-T-G 15572507-T-G **
17784270-T-G 15672390-T-G **
17813341-C-A 15701461-C-A **
17823345-C-A 15711465-C-A **
17823375-T-C 15711495-T-C **
17823379-T-C 15711499-T-C **
17886468-C-A 15774588-C-A **
18035698-G-C 15923818-G-C **
18085417-C-A 15973537-C-A **
18101832-T-A 15989952-T-A **
18101843-T-G 15989963-T-G **
18101856-A-G 15989976-A-G **
18147567-T-G 16035687-T-G **
18185307-C-A 16073427-C-A **
18185399-C-CCTGT 16073519-C-CCTGT **
18189500-C-A 16077620-C-A **
18189521-A-G 16077641-A-G **
18190654-T-A 16078774-T-A **
18407041-C-A 16295161-C-A P6_Gap **
18411143-G-T 16299263-G-T P6_Gap **
18448898-G-GGTAA 16337018-G-GGTAA P6_Dst **
18707884-G-A 16596004-G-A **
18767728-C-T 16655848-C-T **
18789659-C-A 16677779-C-A **
18792761-A-G 16680881-A-G **
18793691-A-C 16681811-A-C **
18818211-C-A 16706331-C-A **
18873817-T-A 16761937-T-A **
18969491-T-A 16857611-T-A **
18990457-C-A 16878577-C-A **
19043035-C-A 16931155-C-A **
19059902-C-A 16948022-C-A **
19088088-C-A 16976208-C-A **
19250239-C-A 17138359-C-A **
19251482-C-A 17139602-C-A **
19302492-G-T 17190612-G-T **
19310810-T-C 17198930-T-C **
19324215-C-A 17212335-C-A **
19379428-A-ACCTGT 17267548-A-ACCTGT **
19379465-C-A 17267585-C-A **
19416487-A-C 17304607-A-C **
19524695-T-A 17412815-T-A **
19528493-C-A 17416613-C-A **
19600641-T-TAC 17488761-T-TAC P5_Prx **
19622233-T-G 17510353-T-G P5_Prx **
19677905-C-AA 17566025-C-AA P5_Prx **
19686898-G-T 17575018-G-T P5_Prx **
19732353-T-A 17620473-T-A P5_Prx **
19746114-C-G 17634234-C-G P5_Prx **
19758799-A-G 17646919-A-G P5_Prx 17×T**
19835482-T-C 17723602-T-C BY49234 P5_Prx **
19926990-T-A 17815110-T-A P5_Prx **
19972603-T-TCAG 17860723-T-TCAG P5_Prx **
20097621-T-TA 17985741-T-TA P5_Dst **
20396223-T-TTCTG 18234337-T-TTCTG P5_Dst **
20430276-A-C 18268390-A-C P5_Dst **
20430285-C-CACACACACA 18268399-C-CACACACACA P5_Dst **
20430296-C-G 18268410-C-G P5_Dst **
20430299-G-A 18268413-G-A P5_Dst **
20497930-T-TCTC 18336044-T-TCTC P5_Dst **
20634949-T-TC 18473063-T-TC P4_Prx **
20696841-T-C 18534955-T-C P4_Prx **
20809852-A-T 18647966-A-T P4_Gap **
20974876-C-CAAT 18812990-C-CAAT P4_Dst **
21029227-C-A 18867341-C-A P4_Dst **
21163039-T-C 19001153-T-C **
21187538-T-A 19025652-T-A **
21280687-G-A 19118801-G-A **
21367690-A-ATT 19205804-A-ATT 14×T**
21410132-C-G 19248246-C-G **
21435054-C-A 19273168-C-A **
21457369-T-C 19295483-T-C **
21459704-C-A 19297818-C-A **
21495828-C-A 19333942-C-A **
21500319-C-T 19338433-C-T **
21513894-C-A 19352008-C-A **
21698340-G-T 19536454-G-T **
21823514-C-A 19661628-C-A **
21863617-C-A 19701731-C-A **
21863678-C-A 19701792-C-A **
21926581-T-A 19764695-T-A **
21990819-A-T 19828933-A-T **
21990849-C-A 19828963-C-A **
22013329-C-A 19851443-C-A **
22056356-A-T 19894470-A-T **
22056360-A-G 19894474-A-G **
22056361-A-C 19894475-A-C **
22056365-A-G 19894479-A-G **
22093014-A-G 19931128-A-G **
22146718-A-G 19984832-A-G **
22169534-T-C 20007648-T-C **
22171669-C-A 20009783-C-A FT161494 **
22173507-C-A 20011621-C-A **
22219081-T-A 20057195-T-A DYZ19 **
22236379-C-A 20074493-C-A DYZ19 **
22237676-T-A 20075790-T-A DYZ19 **
22247361-G-A 20085475-G-A DYZ19 **
22256862-C-T 20094976-C-T DYZ19 **
22309914-C-A 20148028-C-A DYZ19 **
22548209-C-A 20386323-C-A **
22564775-C-T 20402889-C-T **
22564784-C-A 20402898-C-A **
22592212-G-C 20430326-G-C **
22592241-T-C 20430355-T-C **
22662205-C-A 20500319-C-A **
22703593-C-T 20541707-C-T **
22756720-A-C 20594834-A-C **
22800749-C-A 20638863-C-A **
22808934-T-C 20647048-T-C FT81017 **
22810559-A-G 20648673-A-G **
22811731-A-G 20649845-A-G **
22855048-T-G 20693162-T-G **
22855052-A-G 20693166-A-G **
22855365-G-T 20693479-G-T **
22868674-C-A 20706788-C-A **
22950021-T-C 20788135-T-C **
22956049-G-A 20794163-G-A **
22956064-T-A 20794178-T-A **
23036755-C-A 20874869-C-A **
23038132-G-A 20876246-G-A **
23198255-T-A 21036369-T-A **
23316033-T-TTTAA 21154147-T-TTTAA **
23358723-C-A 21196837-C-A **
23358797-C-A 21196911-C-A **
23364264-C-A 21202378-C-A **
23386569-T-C 21224683-T-C **
23395779-G-C 21233893-G-C **
23421043-ATTTTTTT-A 21259157-ATTTTTTT-A 22×T**
23875513-C-A 21713627-C-A **
23954055-C-A 21807908-C-A **
23954127-G-A 21807980-G-A **
23997505-G-C 21851358-G-C **
24205378-T-G 22059231-T-G P3_b1 **
24288076-T-TC 22141929-T-TC P3_t1 **
24512417-G-T 22366270-G-T **
24512654-G-A 22366507-G-A **
24553609-G-T 22407462-G-T P3_t2 **
25333762-A-G 23187615-A-G P2_r1 **
25970719-T-A 23824572-T-A P1_Y1 **
26146916-C-A 24000769-C-A P1_Y1 **
26161211-T-G 24015064-T-G P1_Y1 **
26216078-G-C 24069931-G-C P1_Y1 **
26231028-G-GTGTGCGTATC 24084881-G-GTGTGCGTATC P1_Y1 **
26314688-C-A 24168541-C-A P1_Y1 **
26391653-C-A 24245506-C-A P1_Y1 **
26478037-A-G 24331890-A-G P1_Y1 **
27484258-A-ATCTCTCTT 25338111-A-ATCTCTCTT P1_Y2 19×TCTT**
27521858-TATA-T 25375711-TATA-T P1_Y2 **
27593158-AT-A 25447011-AT-A P1_Y2 8×T**
27714388-A-C 25568241-A-C P1_Y2 **
27714389-G-A 25568242-G-A P1_Y2 **
27714407-G-C 25568260-G-C P1_Y2 **
27714411-C-T 25568264-C-T P1_Y2 **
27733737-A-G 25587590-A-G P1_Y2 **
27864365-C-CTT 25718218-C-CTT P1_Y2 **
27982170-AT-A 25836023-AT-A P1_Y2 **
28006430-A-G 25860283-A-G P1_Y2 **
28114327-G-T 25968180-G-T P1_b4 **
28168111-G-T 26021964-G-T P1_b4 **
28429411-A-G 26283264-A-G P1_gr2 **
28429450-G-T 26283303-G-T P1_gr2 **
28454638-G-T 26308491-G-T P1_gr2 **
28469450-C-T 26323303-C-T **
28481106-C-CCAG 26334959-C-CCAG **
28499387-C-A 26353240-C-A **
28533797-A-G 26387650-A-G **
28555478-A-C 26409331-A-C **
28603647-A-G 26457500-A-G **
28605144-C-G 26458997-C-G **
28622035-G-T 26475888-G-T **
28650781-C-A 26504634-C-A **
28650835-T-A 26504688-T-A **
28700465-A-G 26554318-A-G **
28708995-A-C 26562848-A-C **
28710673-T-A 26564526-T-A **
28729967-C-A 26583820-C-A **
28732929-G-A 26586782-G-A **
28755935-C-A 26609788-C-A **
28763257-C-A 26617110-C-A **
28773956-C-A 26627809-C-A **
56823295-T-TAC 13×AC**
56834953-T-G **
56834976-C-CAGTT **
56839712-A-C **
56849745-G-T **
56851439-A-C **
56851466-A-AC **
56851468-GCA-G **
56858100-G-T **
56882919-G-T **
16062-T-G **
9977933-G-C 10140324-G-C ***
13106254-G-T 10595740-G-T ***
15534035-C-A 13422155-C-A Y50799 ***
13324316-T-C 11168640-T-C BY85191 ***
13705525-C-G 11549849-C-G DYZ17 ***
13313165-C-A 11157489-C-A ***
13402613-C-G 11246937-C-G ***
13864512-AATGGACT-A 11743806-AATGGACT-A DYZ17 ***
13324322-C-A 11168646-C-A ***
13324571-T-C 11168895-T-C ***
13324578-A-G 11168902-A-G ***
14004508-GCA-G 11883802-GCA-G 9×CA***
15146478-G-A 13034565-G-A ***
13314186-G-A 11158510-G-A ***
13314200-A-C 11158524-A-C ***
13496647-G-A 11340971-G-A ***
13317731-G-GA 11162055-G-GA ***
2909276-C-T 3041235-C-T ***
3640452-C-T 3772411-C-T ***
3836767-C-A 3968726-C-A ***
4504932-C-A 4636891-C-A ***
4862476-C-A 4994435-C-A ***
5000008-C-A 5131967-C-A ***
5720872-AT-A 5852831-AT-A ***
7237263-GAAA-G 7369222-GAAA-G 11×A***
7922465-G-T 8054424-G-T ***
8822512-AC-A 8954471-AC-A ***
9952349-C-A 10114740-C-A ***
9952376-C-A 10114767-C-A ***
10652134-C-A ***
10831465-C-A ***
10831542-A-G FT433178 ***
10866334-C-A ***
10894874-C-A ***
10968485-T-C ***
11020650-C-A ***
13194008-C-A 11038332-C-A ***
14216285-T-C 12095579-T-C ***
14468822-GAA-G,GA 12348091-GAA-G,GA 14×A***
14776923-CAA-C,CA 12664992-CAA-C,CA 15×A***
15250858-TAAA-T 13138944-TAAA-T 15×A***
15385773-T-TTTA 13273893-T-TTTA ***
15770693-A-G 13658813-A-G ***
15982168-GA-G,GAAA 13870288-GA-G,GAAA 15×A***
16342323-G-T 14230443-G-T Y96026 ***
16623627-G-T 14511747-G-T ***
17385590-CAA-C,CA 15273710-CAA-C,CA 12×A***
17908042-C-A 15796162-C-A ***
18094316-G-T 15982436-G-T ***
18106353-GT-G,GTT 15994473-GT-G,GTT 15×T***
18615932-CTTT-C,CTT 16504052-CTTT-C,CTT 27×T***
21554883-C-A 19392997-C-A ***
22801913-C-A 20640027-C-A ***
56826295-G-T ***
23002386-C-A 20840500-C-A ***
56826297-A-C ***
56826301-T-G ***
58972965-T-G 56826818-T-G ***
56829892-C-A ***
56833085-C-A ***
56836646-C-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Mutation Notes:

Kit POSITION-REF-ALT (hg19) POSITION-REF-ALT (hg38) Note
Manual14242365-CATATG-C12121659-CATATG-CAbout 35 positive reads.