Carey
FTDNA: 80603, BigY2: 80603MDKA Birth:

Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | FTDNA 80603 | BigY2 80603 |
---|---|---|---|---|---|---|---|---|---|
19721696-C-T | 17609816-C-T | P5_Prx | *** | A* | |||||
6223157-A-C | 6355116-A-C | IR3_Dst | *** | A* | |||||
24274635-C-T | 22128488-C-T | P3_b1 | *** | A* | |||||
13687856-A-G | 11532180-A-G | A* | |||||||
26073030-T-G | 23926883-T-G | P1_Y1 | *** | A* | |||||
28817857-T-G | 26671710-T-G | A* | |||||||
2703831-G-C | 2835790-G-C | Y60152 | Y | Y | + | + | |||
16515679-C-G | 14403799-C-G | Y70054 | Y | Y | + | + | |||
21700267-G-A | 19538381-G-A | M5544 PF1821 | Y | Y | + | ** | |||
24422825-T-C | 22276678-T-C | Y80685 | Y | + | + | ||||
18076729-G-C | 15964849-G-C | Y72991 | Y | Y | + | + | |||
16762680-G-A | 14650800-G-A | Y70444 | Y | Y | + | + | |||
24071868-C-G | 21925721-C-G | P3_b1 | + | ||||||
9114574-G-A | 9276965-G-A | BY78220 | Y | + | + | ||||
8869346-C-T | 9001305-C-T | Y64645 | Y | + | + | ||||
8071468-C-T | 8203427-C-T | Y63063 | Y | Y | + | + | |||
7637160-T-C | 7769119-T-C | Y62284 | Y | Y | + | + | |||
16498159-G-A | 14386279-G-A | ** | |||||||
16522683-C-A | 14410803-C-A | ** | |||||||
16505079-C-A | 14393199-C-A | ** | |||||||
16828935-T-C | 14717055-T-C | ** | |||||||
16826631-T-C | 14714751-T-C | ** | |||||||
16480826-C-A | 14368946-C-A | ** | |||||||
16654398-C-A | 14542518-C-A | ** | |||||||
15232814-C-G | 13120900-C-G | CTS3864 | ** | ||||||
16828962-T-C | 14717082-T-C | ** | |||||||
16971458-G-A | 14859578-G-A | ** | |||||||
16981362-C-A | 14869482-C-A | ** | |||||||
17103745-A-T | 14991865-A-T | ** | |||||||
17125957-A-G | 15014077-A-G | ** | |||||||
16464579-C-A | 14352699-C-A | ** | |||||||
17175424-A-G | 15063544-A-G | ** | |||||||
17175433-T-C | 15063553-T-C | ** | |||||||
17175435-A-T | 15063555-A-T | ** | |||||||
17318345-C-A | 15206465-C-A | ** | |||||||
17318351-G-A | 15206471-G-A | ** | |||||||
17338561-G-GC | 15226681-G-GC | ** | |||||||
17374705-T-G | 15262825-T-G | ** | |||||||
16464833-C-A | 14352953-C-A | ** | |||||||
16180352-T-A | 14068472-T-A | ** | |||||||
16422041-C-T | 14310161-C-T | ** | |||||||
16022231-C-A | 13910351-C-A | ** | |||||||
15699871-T-C | 13587991-T-C | ** | |||||||
15700548-T-A | 13588668-T-A | ** | |||||||
15770217-A-G | 13658337-A-G | ** | |||||||
15777004-C-A | 13665124-C-A | ** | |||||||
15790444-A-C | 13678564-A-C | ** | |||||||
15834196-C-A | 13722316-C-A | ** | |||||||
15982090-G-A | 13870210-G-A | ** | |||||||
16003866-C-T | 13891986-C-T | ** | |||||||
16017549-C-A | 13905669-C-A | ** | |||||||
16029580-C-A | 13917700-C-A | ** | |||||||
16351798-C-T | 14239918-C-T | ** | |||||||
16035347-G-C | 13923467-G-C | ** | |||||||
16035349-C-A | 13923469-C-A | ** | |||||||
16035376-G-A | 13923496-G-A | ** | |||||||
16176603-C-A | 14064723-C-A | ** | |||||||
17455852-T-C | 15343972-T-C | ** | |||||||
16245483-C-A | 14133603-C-A | ** | |||||||
16271269-T-G | 14159389-T-G | ** | |||||||
16320372-G-T | 14208492-G-T | ** | |||||||
16342442-G-A | 14230562-G-A | ** | |||||||
17455839-C-A | 15343959-C-A | ** | |||||||
17968861-T-A | 15856981-T-A | ** | |||||||
17503359-A-G | 15391479-A-G | ** | |||||||
18792749-C-A | 16680869-C-A | ** | |||||||
18618016-T-C | 16506136-T-C | ** | |||||||
18618062-A-G | 16506182-A-G | ** | |||||||
18653311-A-G | 16541431-A-G | ** | |||||||
18653317-T-C | 16541437-T-C | ** | |||||||
18653318-G-T | 16541438-G-T | ** | |||||||
18653320-C-A | 16541440-C-A | ** | |||||||
18653330-C-T | 16541450-C-T | ** | |||||||
18758923-C-A | 16647043-C-A | ** | |||||||
18767693-A-G | 16655813-A-G | ** | |||||||
18850509-G-C | 16738629-G-C | ** | |||||||
18617996-G-A | 16506116-G-A | ** | |||||||
18933552-C-G | 16821672-C-G | ** | |||||||
18956182-T-A | 16844302-T-A | ** | |||||||
19012607-G-T | 16900727-G-T | ** | |||||||
19044373-C-G | 16932493-C-G | ** | |||||||
19044554-C-A | 16932674-C-A | ** | |||||||
19064170-C-CTCAT | 16952290-C-CTCAT | ** | |||||||
19064182-A-C | 16952302-A-C | ** | |||||||
19064198-T-G | 16952318-T-G | ** | |||||||
19064239-G-T | 16952359-G-T | ** | |||||||
18618013-T-G | 16506133-T-G | ** | |||||||
18617986-G-T | 16506106-G-T | ** | |||||||
17538029-G-C | 15426149-G-C | ** | |||||||
17968878-A-T | 15856998-A-T | ** | |||||||
17544884-C-A | 15433004-C-A | ** | |||||||
17601051-C-T | 15489171-C-T | ** | |||||||
17601053-G-A | 15489173-G-A | ** | |||||||
17624588-G-T | 15512708-G-T | ** | |||||||
17668309-G-A | 15556429-G-A | ** | |||||||
17782661-C-A | 15670781-C-A | ** | |||||||
17968857-C-T | 15856977-C-T | ** | |||||||
15671361-A-T | 13559481-A-T | ** | |||||||
17968867-T-A | 15856987-T-A | ** | |||||||
17991855-A-G | 15879975-A-G | P7_Prx | ** | ||||||
18617949-A-G | 16506069-A-G | ** | |||||||
17991858-T-G | 15879978-T-G | P7_Prx | ** | ||||||
17991916-A-G | 15880036-A-G | P7_Prx | ** | ||||||
18143638-A-G | 16031758-A-G | ** | |||||||
18159145-C-A | 16047265-C-A | ** | |||||||
18185291-G-A | 16073411-G-A | ** | |||||||
18195989-A-T | 16084109-A-T | ** | |||||||
18297542-G-T | 16185662-G-T | P6_Prx | ** | ||||||
18344535-G-GC | 16232655-G-GC | P6_Prx | ** | ||||||
18344539-G-C | 16232659-G-C | P6_Prx | ** | ||||||
15698634-C-A | 13586754-C-A | ** | |||||||
15179060-C-A | 13067146-C-A | ** | |||||||
15468427-C-A | 13356547-C-A | ** | |||||||
13644622-C-G | 11488946-C-G | ** | |||||||
13526950-C-A | 11371274-C-A | ** | |||||||
13554758-C-A | 11399082-C-A | ** | |||||||
13555979-G-A | 11400303-G-A | ** | |||||||
13604776-T-C | 11449100-T-C | ** | |||||||
13605901-C-A | 11450225-C-A | ** | |||||||
13606640-C-A | 11450964-C-A | ** | |||||||
13626715-C-A | 11471039-C-A | ** | |||||||
13634041-T-G | 11478365-T-G | ** | |||||||
13644611-CGAT-C | 11488935-CGAT-C | ** | |||||||
13707393-C-T | 11551717-C-T | ** | |||||||
13421898-C-T | 11266222-C-T | ** | |||||||
13734352-G-T | 11578676-G-T | ** | |||||||
11652853-T-TGATAC | ** | ||||||||
11656717-TGAAA-T | ** | ||||||||
11656731-T-C | ** | ||||||||
11671421-G-A | ** | ||||||||
11674328-A-G | ** | ||||||||
11674330-T-A | ** | ||||||||
11674333-GGAGTA-G | ** | ||||||||
11674342-T-G | ** | ||||||||
13525671-C-A | 11369995-C-A | ** | |||||||
13402853-G-T | 11247177-G-T | ** | |||||||
13857069-A-G | 11736363-A-G | ** | |||||||
11015769-T-A | ** | ||||||||
10991160-CGTTCT-C | ** | ||||||||
10991181-ATTCCC-A | ** | ||||||||
10992281-C-G | ** | ||||||||
10992334-T-TCGTTC | ** | ||||||||
10992349-C-CTATCT | ** | ||||||||
11000024-C-G | ** | ||||||||
11004047-C-T | ** | ||||||||
11005799-G-T | ** | ||||||||
11008315-T-C | ** | ||||||||
11015782-C-G | ** | ||||||||
13315484-C-A | 11159808-C-A | ** | |||||||
11015803-C-G | ** | ||||||||
11015927-C-G | ** | ||||||||
11016053-G-T | ** | ||||||||
11021142-C-A | ** | ||||||||
11022405-A-ATCACC | ** | ||||||||
13196810-C-A | 11041134-C-A | ** | |||||||
13218922-G-A | 11063246-G-A | ** | |||||||
13250302-C-A | 11094626-C-A | ** | |||||||
13305030-T-C | 11149354-T-C | ** | |||||||
13809522-A-AGGAATGGAATGGAAT | 11688816-A-AGGAATGGAATGGAAT | 10×GGAAT | ** | ||||||
13900175-G-C | 11779469-G-C | ** | |||||||
15438964-C-A | 13327084-C-A | ** | |||||||
15012637-T-C | 12900725-T-C | ** | |||||||
14610567-TC-T | 12498769-TC-T | ** | |||||||
14626154-T-C | 12514222-T-C | ** | |||||||
14649427-C-A | 12537492-C-A | ** | |||||||
14677076-G-T | 12565142-G-T | ** | |||||||
14700887-G-T | 12588953-G-T | ** | |||||||
14768427-T-G | 12656496-T-G | ** | |||||||
14787984-T-C | 12676055-T-C | ** | |||||||
14909322-C-G | 12797389-C-G | ** | |||||||
14911835-C-A | 12799902-C-A | ** | |||||||
15098258-A-G | 12986346-A-G | ** | |||||||
14609795-G-T | 12497997-G-T | ** | |||||||
15115608-CT-C | 13003695-CT-C | 8×T | ** | ||||||
19187485-C-T | 17075605-C-T | ** | |||||||
15218869-C-A | 13106955-C-A | ** | |||||||
15308308-A-G | 13196410-A-G | ** | |||||||
15369078-T-C | 13257198-T-C | ** | |||||||
15379789-A-C | 13267909-A-C | ** | |||||||
15379793-T-C | 13267913-T-C | ** | |||||||
15379799-T-G | 13267919-T-G | ** | |||||||
15401245-C-A | 13289365-C-A | ** | |||||||
14610556-CT-C | 12498758-CT-C | ** | |||||||
14571114-G-T | 12459314-G-T | ** | |||||||
13934237-C-A | 11813531-C-A | ** | |||||||
14239399-C-A | 12118693-C-A | ** | |||||||
13938219-C-A | 11817513-C-A | ** | |||||||
13945444-T-C | 11824738-T-C | ** | |||||||
13997771-C-CTT | 11877065-C-CTT | 17×T | ** | ||||||
14027459-T-A | 11906753-T-A | ** | |||||||
14027470-T-C | 11906764-T-C | ** | |||||||
14047966-T-C | 11927260-T-C | Y65838 | ** | ||||||
14059097-A-G | 11938391-A-G | ** | |||||||
14176318-C-A | 12055612-C-A | ** | |||||||
14204959-A-G | 12084253-A-G | ** | |||||||
14300133-C-A | 12179427-C-A | ** | |||||||
14568960-G-A | 12457160-G-A | ** | |||||||
14352579-CTT-C | 12231874-CTT-C | 14×T | ** | ||||||
14367824-T-C | 12247120-T-C | ** | |||||||
14390699-T-C | 12269995-T-C | ** | |||||||
14485825-C-A | 12365094-C-A | ** | |||||||
14490710-G-A | 12369979-G-A | ** | |||||||
14510105-C-A | 12398310-C-A | ** | |||||||
14511864-T-C | 12400069-T-C | ** | |||||||
14513237-G-T | 12401442-G-T | ** | |||||||
14568939-C-A | 12457139-C-A | ** | |||||||
19129421-C-A | 17017541-C-A | ** | |||||||
19254335-C-A | 17142455-C-A | ** | |||||||
19187508-G-A | 17075628-G-A | ** | |||||||
24278462-A-ACACTC | 22132315-A-ACACTC | P3_b1 | ** | ||||||
23425385-A-C | 21263499-A-C | ** | |||||||
23439012-CG-C | 21277126-CG-C | ** | |||||||
23778083-T-A | 21616197-T-A | ** | |||||||
23790185-C-A | 21628299-C-A | ** | |||||||
23801710-G-T | 21639824-G-T | ** | |||||||
23802179-G-C | 21640293-G-C | ** | |||||||
23825123-G-A | 21663237-G-A | ** | |||||||
23825129-G-T | 21663243-G-T | ** | |||||||
24206005-C-A | 22059858-C-A | P3_b1 | ** | ||||||
24283455-C-A | 22137308-C-A | P3_t1 | ** | ||||||
23387473-C-A | 21225587-C-A | ** | |||||||
24402072-A-C | 22255925-A-C | ** | |||||||
24406568-C-A | 22260421-C-A | ** | |||||||
24408438-T-G | 22262291-T-G | ** | |||||||
24408466-G-C | 22262319-G-C | ** | |||||||
24408492-C-A | 22262345-C-A | ** | |||||||
24408548-T-G | 22262401-T-G | ** | |||||||
24415728-A-G | 22269581-A-G | ** | |||||||
24435506-C-A | 22289359-C-A | ** | |||||||
24509391-C-A | 22363244-C-A | ** | |||||||
23425381-A-C | 21263495-A-C | ** | |||||||
23372957-C-A | 21211071-C-A | ** | |||||||
24607231-T-TGCA | 22461084-T-TGCA | P3_t2 | ** | ||||||
23100214-G-T | 20938328-G-T | ** | |||||||
23048237-C-T | 20886351-C-T | FT51523 | ** | ||||||
23091672-T-C | 20929786-T-C | ** | |||||||
23100136-T-C | 20938250-T-C | ** | |||||||
23100137-G-A | 20938251-G-A | ** | |||||||
23100145-T-C | 20938259-T-C | ** | |||||||
23100148-A-G | 20938262-A-G | ** | |||||||
23100150-G-A | 20938264-G-A | ** | |||||||
23100158-G-A | 20938272-G-A | ** | |||||||
23100201-T-C | 20938315-T-C | ** | |||||||
23100219-A-G | 20938333-A-G | ** | |||||||
23225489-T-C | 21063603-T-C | ** | |||||||
23100228-G-A | 20938342-G-A | ** | |||||||
23100243-G-C | 20938357-G-C | ** | |||||||
23100248-C-T | 20938362-C-T | ** | |||||||
23100258-A-G | 20938372-A-G | ** | |||||||
23102896-G-T | 20941010-G-T | ** | |||||||
23142264-C-A | 20980378-C-A | ** | |||||||
23144174-T-A | 20982288-T-A | FGC66176 | ** | ||||||
23200361-G-T | 21038475-G-T | ** | |||||||
23206075-G-T | 21044189-G-T | ** | |||||||
24575566-G-T | 22429419-G-T | P3_t2 | ** | ||||||
24637444-C-T | 22491297-C-T | P3_t2 | ** | ||||||
22884992-G-A | 20723106-G-A | ** | |||||||
56841174-C-A | ** | ||||||||
28798448-A-G | 26652301-A-G | ** | |||||||
28798449-T-G | 26652302-T-G | ** | |||||||
28814989-G-T | 26668842-G-T | ** | |||||||
56684003-G-A | ** | ||||||||
56684007-A-G | ** | ||||||||
56684009-T-A | ** | ||||||||
56763524-T-C | ** | ||||||||
56822950-G-T | ** | ||||||||
56838218-G-A | ** | ||||||||
56842141-G-T | ** | ||||||||
28798429-A-T | 26652282-A-T | ** | |||||||
56846128-C-G | ** | ||||||||
56846846-G-T | ** | ||||||||
56847300-C-A | ** | ||||||||
56848627-A-G | ** | ||||||||
56848628-G-A | ** | ||||||||
56848633-C-A | ** | ||||||||
56848641-A-T | ** | ||||||||
56860479-C-A | ** | ||||||||
36634-A-T | ** | ||||||||
28798436-T-G | 26652289-T-G | ** | |||||||
28798426-T-G | 26652279-T-G | ** | |||||||
24637480-G-GC | 22491333-G-GC | P3_t2 | ** | ||||||
28533700-G-GTTT | 26387553-G-GTTT | 15×T | ** | ||||||
25982580-A-AG | 23836433-A-AG | P1_Y1 | ** | ||||||
26478148-GA-G | 24332001-GA-G | P1_Y1 | ** | ||||||
27584483-G-T | 25438336-G-T | P1_Y2 | ** | ||||||
27791901-T-C | 25645754-T-C | P1_Y2 | ** | ||||||
27791916-T-A | 25645769-T-A | P1_Y2 | ** | ||||||
27864331-T-G | 25718184-T-G | P1_Y2 | ** | ||||||
28461549-C-A | 26315402-C-A | ** | |||||||
28465149-A-G | 26319002-A-G | ** | |||||||
28529741-G-T | 26383594-G-T | ** | |||||||
28575307-C-A | 26429160-C-A | ** | |||||||
28798408-A-G | 26652261-A-G | ** | |||||||
28611637-A-G | 26465490-A-G | ** | |||||||
28614109-C-A | 26467962-C-A | ** | |||||||
28641141-C-A | 26494994-C-A | ** | |||||||
28642806-A-G | 26496659-A-G | ** | |||||||
28642809-G-T | 26496662-G-T | 22×AC | ** | ||||||
28653951-T-C | 26507804-T-C | ** | |||||||
28742590-C-A | 26596443-C-A | ** | |||||||
28798401-G-C | 26652254-G-C | ** | |||||||
28798406-G-A | 26652259-G-A | ** | |||||||
22994681-A-T | 20832795-A-T | ** | |||||||
22797728-T-C | 20635842-T-C | ** | |||||||
19187515-T-C | 17075635-T-C | ** | |||||||
21141285-C-A | 18979399-C-A | ** | |||||||
20757395-A-T | 18595509-A-T | P4_Prx | ** | ||||||
20757396-C-CT | 18595510-C-CT | P4_Prx | ** | ||||||
20802733-C-A | 18640847-C-A | P4_Gap | ** | ||||||
20824982-C-A | 18663096-C-A | P4_Gap | ** | ||||||
21009204-T-TCA | 18847318-T-TCA | P4_Dst | ** | ||||||
21030989-GTTGT-G | 18869103-GTTGT-G | P4_Dst | ** | ||||||
21073302-C-A | 18911416-C-A | ** | |||||||
21078160-G-T | 18916274-G-T | ** | |||||||
21078958-C-A | 18917072-C-A | ** | |||||||
21201830-T-A | 19039944-T-A | ** | |||||||
20574782-T-C | 18412896-T-C | P5_Dst | ** | ||||||
21207535-G-T | 19045649-G-T | ** | |||||||
21268695-C-A | 19106809-C-A | ** | |||||||
21270900-G-A | 19109014-G-A | ** | |||||||
21323311-T-C | 19161425-T-C | ** | |||||||
21387154-C-A | 19225268-C-A | ** | |||||||
21387157-A-G | 19225271-A-G | ** | |||||||
21387158-A-T | 19225272-A-T | ** | |||||||
21387164-T-C | 19225278-T-C | ** | |||||||
21387179-A-G | 19225293-A-G | ** | |||||||
20574895-T-C | 18413009-T-C | P5_Dst | ** | ||||||
20560042-T-TGC | 18398156-T-TGC | P5_Dst | ** | ||||||
21459516-T-C | 19297630-T-C | ** | |||||||
19558849-C-A | 17446969-C-A | ** | |||||||
19187521-G-A | 17075641-G-A | ** | |||||||
19187523-C-T | 17075643-C-T | ** | |||||||
19187547-C-G | 17075667-C-G | ** | |||||||
19189572-C-T | 17077692-C-T | ** | |||||||
19189578-G-A | 17077698-G-A | ** | |||||||
19189613-A-C | 17077733-A-C | ** | |||||||
19235632-C-A | 17123752-C-A | ** | |||||||
10985732-TGCAAC-T | ** | ||||||||
19379419-T-C | 17267539-T-C | ** | |||||||
19561433-G-T | 17449553-G-T | ** | |||||||
20560038-C-T | 18398152-C-T | P5_Dst | ** | ||||||
19706674-A-G | 17594794-A-G | P5_Prx | ** | ||||||
19770273-A-T | 17658393-A-T | P5_Prx | ** | ||||||
19910630-A-AGACAG | 17798750-A-AGACAG | P5_Prx | ** | ||||||
20025442-T-TC | 17913562-T-TC | P5_Prx | ** | ||||||
20221490-A-G | 18059604-A-G | P5_Dst | ** | ||||||
20255096-A-AT | 18093210-A-AT | P5_Dst | ** | ||||||
20442947-T-TGTGTGA | 18281061-T-TGTGTGA | P5_Dst | ** | ||||||
20442974-G-T | 18281088-G-T | P5_Dst | ** | ||||||
20534983-A-G | 18373097-A-G | P5_Dst | ** | ||||||
21427356-C-A | 19265470-C-A | ** | |||||||
21488703-T-A | 19326817-T-A | ** | |||||||
22668631-A-TG | 20506745-A-TG | ** | |||||||
22619441-G-C | 20457555-G-C | ** | |||||||
22203643-C-A | 20041757-C-A | ** | |||||||
22215109-C-A | 20053223-C-A | ** | |||||||
22240076-A-C | 20078190-A-C | DYZ19 | ** | ||||||
22244016-A-G | 20082130-A-G | DYZ19 | ** | ||||||
22345737-C-T | 20183851-C-T | DYZ19 | ** | ||||||
22521207-C-A | 20359321-C-A | ** | |||||||
22602086-A-G | 20440200-A-G | ** | |||||||
22613964-T-C | 20452078-T-C | ** | |||||||
22614867-A-G | 20452981-A-G | ** | |||||||
22668512-A-G | 20506626-A-G | ** | |||||||
22084850-C-A | 19922964-C-A | ** | |||||||
22668523-A-C | 20506637-A-C | ** | |||||||
22668528-G-A | 20506642-G-A | ** | |||||||
22668549-A-G | 20506663-A-G | ** | |||||||
22668561-T-C | 20506675-T-C | ** | |||||||
22668572-T-C | 20506686-T-C | ** | |||||||
22668587-T-C | 20506701-T-C | ** | |||||||
22668593-A-C | 20506707-A-C | ** | |||||||
22668599-C-G | 20506713-C-G | ** | |||||||
22668605-T-C | 20506719-T-C | ** | |||||||
22097170-C-A | 19935284-C-A | ** | |||||||
22047825-A-G | 19885939-A-G | ** | |||||||
21498955-T-C | 19337069-T-C | ** | |||||||
21524330-A-C | 19362444-A-C | ** | |||||||
21498958-CTT-C | 19337072-CTT-C | ** | |||||||
21498962-A-AC | 19337076-A-AC | ** | |||||||
21498978-C-T | 19337092-C-T | ** | |||||||
21500585-G-T | 19338699-G-T | ** | |||||||
21524279-T-C | 19362393-T-C | ** | |||||||
21524282-A-T | 19362396-A-T | ** | |||||||
21524293-A-G | 19362407-A-G | FT205492 | ** | ||||||
21524317-G-T | 19362431-G-T | ** | |||||||
21524326-A-G | 19362440-A-G | ** | |||||||
21578631-C-T | 19416745-C-T | ** | |||||||
21954592-T-C | 19792706-T-C | ** | |||||||
21584022-T-A | 19422136-T-A | ** | |||||||
21602660-A-G | 19440774-A-G | ** | |||||||
21677118-C-A | 19515232-C-A | ** | |||||||
21700587-C-A | 19538701-C-A | ** | |||||||
21805786-C-A | 19643900-C-A | ** | |||||||
21805913-C-A | 19644027-C-A | ** | |||||||
21863369-T-C | 19701483-T-C | ** | |||||||
21886043-C-A | 19724157-C-A | ** | |||||||
21954587-A-C | 19792701-A-C | ** | |||||||
10987059-C-T | ** | ||||||||
11004059-G-A | ** | ||||||||
10981604-C-G | ** | ||||||||
3052236-C-A | 3184195-C-A | ** | |||||||
18618022-G-T | 16506142-G-T | ** | |||||||
18618037-T-A | 16506157-T-A | ** | |||||||
2845221-C-A | 2977180-C-A | 38×A | ** | ||||||
2885588-G-T | 3017547-G-T | ** | |||||||
2947624-C-A | 3079583-C-A | ** | |||||||
2980149-C-A | 3112108-C-A | ** | |||||||
3052017-A-G | 3183976-A-G | ** | |||||||
3052171-C-A | 3184130-C-A | ** | |||||||
3093670-A-G | 3225629-A-G | ** | |||||||
18617935-A-G | 16506055-A-G | ** | |||||||
3107135-C-A | 3239094-C-A | ** | |||||||
3112315-G-A | 3244274-G-A | FT409496 | ** | ||||||
3175045-A-G | 3307004-A-G | FT183358 | ** | ||||||
3175184-A-G | 3307143-A-G | ** | |||||||
3284116-T-C | 3416075-T-C | ** | |||||||
3286576-C-A | 3418535-C-A | ** | |||||||
3489481-C-A | 3621440-C-A | ** | |||||||
3507142-G-T | 3639101-G-T | ** | |||||||
18617994-A-G | 16506114-A-G | ** | |||||||
8482017-C-A | 8613976-C-A | ** | |||||||
3602763-C-A | 3734722-C-A | ** | |||||||
14184500-C-A | 12063794-C-A | FTB80824 | ** | ||||||
9811052-A-T | 9973443-A-T | ** | |||||||
10926341-C-T | ** | ||||||||
3343266-C-A | 3475225-C-A | ** | |||||||
3960899-C-A | 4092858-C-A | ** | |||||||
19059744-ATTCT-A | 16947864-ATTCT-A | ** | |||||||
28724216-G-C | 26578069-G-C | ** | |||||||
28793784-G-C | 26647637-G-C | ** | |||||||
6756907-T-C | 6888866-T-C | ** | |||||||
28776318-C-A | 26630171-C-A | ** | |||||||
10800485-T-C | ** | ||||||||
28798768-C-A | 26652621-C-A | ** | |||||||
56834927-C-A | ** | ||||||||
4509314-C-A | 4641273-C-A | ** | |||||||
19476651-C-A | 17364771-C-A | ** | |||||||
19187502-G-C | 17075622-G-C | ** | |||||||
6029106-C-A | 6161065-C-A | ** | |||||||
13939921-C-A | 11819215-C-A | ** | |||||||
14768412-A-G | 12656481-A-G | ** | |||||||
14768417-T-C | 12656486-T-C | ** | |||||||
3544447-T-A | 3676406-T-A | ** | |||||||
3609523-C-A | 3741482-C-A | ** | |||||||
10864388-G-T | ** | ||||||||
4777915-C-T | 4909874-C-T | ** | |||||||
4557331-A-G | 4689290-A-G | ** | |||||||
4566956-T-A | 4698915-T-A | ** | |||||||
4616720-C-A | 4748679-C-A | ** | |||||||
4728080-C-T | 4860039-C-T | BY49886 | FT7587 | ** | |||||
4728132-G-A | 4860091-G-A | ** | |||||||
4777886-T-C | 4909845-T-C | ** | |||||||
4777887-G-A | 4909846-G-A | ** | |||||||
4777908-G-C | 4909867-G-C | ** | |||||||
4777917-C-T | 4909876-C-T | ** | |||||||
4439764-G-T | 4571723-G-T | FT379801 | ** | ||||||
4873843-C-A | 5005802-C-A | ** | |||||||
4874178-C-A | 5006137-C-A | ** | |||||||
4900774-G-C | 5032733-G-C | ** | |||||||
4957778-C-A | 5089737-C-A | ** | |||||||
4964562-T-C | 5096521-T-C | ** | |||||||
4976787-C-CAAA | 5108746-C-CAAA | 21×A | ** | ||||||
5022667-G-T | 5154626-G-T | FT373010 | 12×GT | ** | |||||
5087348-C-A | 5219307-C-A | ** | |||||||
5221136-C-A | 5353095-C-A | ** | |||||||
4471031-TTG-T | 4602990-TTG-T | ** | |||||||
4387687-G-T | 4519646-G-T | ** | |||||||
3611968-T-A | 3743927-T-A | ** | |||||||
4069312-C-A | 4201271-C-A | ** | |||||||
3612073-G-T | 3744032-G-T | ** | |||||||
3640578-T-C | 3772537-T-C | ** | |||||||
3689301-C-A | 3821260-C-A | ** | |||||||
3804264-A-G | 3936223-A-G | ** | |||||||
3816365-G-A | 3948324-G-A | ** | |||||||
3816533-G-C | 3948492-G-C | ** | |||||||
3866970-G-T | 3998929-G-T | ** | |||||||
4017190-C-A | 4149149-C-A | ** | |||||||
4077595-C-T | 4209554-C-T | ** | |||||||
10980559-C-A | ** | ||||||||
4100461-C-A | 4232420-C-A | ** | |||||||
4114813-C-G | 4246772-C-G | ** | |||||||
4134024-C-A | 4265983-C-A | ** | |||||||
4177956-A-T | 4309915-A-T | ** | |||||||
4191594-G-T | 4323553-G-T | ** | |||||||
4229259-C-A | 4361218-C-A | ** | |||||||
4240904-G-C | 4372863-G-C | ** | |||||||
4293650-T-C | 4425609-T-C | ** | |||||||
4293653-C-T | 4425612-C-T | ** | |||||||
21323302-A-C | 19161416-A-C | ** | |||||||
10894066-C-A | ** | ||||||||
5412426-ATTTATGAAAT-A | 5544385-ATTTATGAAAT-A | ** | |||||||
25333889-AC-A | 23187742-AC-A | P2_r1 | ** | ||||||
10974302-C-A | ** | ||||||||
25333912-A-T | 23187765-A-T | P2_r1 | ** | ||||||
5443289-C-A | 5575248-C-A | ** | |||||||
27808453-CTTT-C | 25662306-CTTT-C | P1_Y2 | 15×T | ** | |||||
10805359-T-C | ** | ||||||||
5215748-C-A | 5347707-C-A | ** | |||||||
10973592-C-T | ** | ||||||||
10973633-G-A | ** | ||||||||
10884156-G-T | ** | ||||||||
13962069-TTG-T | 11841363-TTG-T | ** | |||||||
15700410-A-C | 13588530-A-C | ** | |||||||
10755388-ACTCATCTCTGTTTCATTCCG-A | ** | ||||||||
14451260-C-T | 12330533-C-T | ** | |||||||
10685842-C-A | ** | ||||||||
10885196-C-G | ** | ||||||||
10926297-A-G | ** | ||||||||
10758298-C-A | ** | ||||||||
15392238-C-A | 13280358-C-A | ** | |||||||
5585991-C-A | 5717950-C-A | ** | |||||||
14561495-C-A | 12449696-C-A | ** | |||||||
19130770-TTG-T | 17018890-TTG-T | ** | |||||||
21163024-C-A | 19001138-C-A | ** | |||||||
28545696-CAAAAAAAA-C | 26399549-CAAAAAAAA-C | 26×A | ** | ||||||
24404239-T-G | 22258092-T-G | A7894 | ** | ||||||
14300108-C-A | 12179402-C-A | ** | |||||||
15126283-C-A | 13014370-C-A | ** | |||||||
15995283-G-T | 13883403-G-T | Y637 | ** | ** | |||||
22542768-A-G | 20380882-A-G | Y652 | ** | ||||||
22668577-G-C | 20506691-G-C | ** | |||||||
19189551-C-A | 17077671-C-A | ** | |||||||
21371518-A-G | 19209632-A-G | ** | |||||||
17991892-C-G | 15880012-C-G | BY17434 | P7_Prx | ** | |||||
8668381-TA-T | 8800340-TA-T | 8×A | ** | ||||||
22268506-A-C | 20106620-A-C | DYZ19 | ** | ||||||
28492708-G-A | 26346561-G-A | ** | |||||||
15832239-G-T | 13720359-G-T | ** | |||||||
10935588-A-G | ** | ||||||||
14168159-C-A | 12047453-C-A | ** | |||||||
15113564-C-A | 13001651-C-A | ** | |||||||
10885113-A-G | ** | ||||||||
13237723-C-A | 11082047-C-A | ** | |||||||
24884516-A-G | 22738369-A-G | F13895 | g1 | ** | |||||
14596183-C-A | 12484383-C-A | ** | |||||||
4256914-C-A | 4388873-C-A | ** | |||||||
10992310-C-T | ** | ||||||||
10763187-C-A | ** | ||||||||
13222160-A-G | 11066484-A-G | ** | |||||||
19272169-G-T | 17160289-G-T | ** | |||||||
13938729-C-T | 11818023-C-T | ** | |||||||
10858464-A-T | ** | ||||||||
7650323-C-A | 7782282-C-A | ** | |||||||
13890913-C-A | 11770207-C-A | ** | |||||||
18174848-C-A | 16062968-C-A | ** | |||||||
21238258-C-A | 19076372-C-A | ** | |||||||
6465537-CTT-C | 6597496-CTT-C | 11×T | ** | ||||||
10888682-T-C | ** | ||||||||
10885134-T-G | ** | ||||||||
10885138-A-T | ** | ||||||||
10885144-C-T | ** | ||||||||
10885151-C-A | ** | ||||||||
13196073-C-A | 11040397-C-A | ** | |||||||
18253275-C-A | 16141395-C-A | ** | |||||||
17455803-C-A | 15343923-C-A | ** | |||||||
15776049-C-A | 13664169-C-A | ** | |||||||
10987060-A-G | ** | ||||||||
10888700-T-C | ** | ||||||||
9724830-A-AG | 9887221-A-AG | IR3_Prx | ** | ||||||
9577176-C-A | 9739567-C-A | IR3_Prx | ** | ||||||
14510027-C-A | 12398232-C-A | ** | |||||||
10885169-T-A | ** | ||||||||
9482469-C-A | 9644860-C-A | ** | |||||||
16032212-C-A | 13920332-C-A | ** | |||||||
11015796-CT-C | ** | ||||||||
56826035-GAGTTC-G | ** | ||||||||
7423823-C-A | 7555782-C-A | ** | |||||||
10992297-C-G | ** | ||||||||
8697674-C-A | 8829633-C-A | ** | |||||||
4453946-C-A | 4585905-C-A | ** | |||||||
9623314-GA-G | 9785705-GA-G | IR3_Prx | 9×A | ** | |||||
22268537-T-A | 20106651-T-A | DYZ19 | ** | ||||||
10926305-T-G | ** | ||||||||
10926325-C-T | ** | ||||||||
9968328-C-A | 10130719-C-A | ** | |||||||
19202925-TCTC-T | 17091045-TCTC-T | ** | |||||||
13474547-GC-G | 11318871-GC-G | ** | |||||||
10807800-C-A | ** | ||||||||
11012279-C-A | FT393645 | ** | |||||||
14470479-C-A | 12349748-C-A | ** | |||||||
5331687-A-T | 5463646-A-T | ** | |||||||
4357635-A-G | 4489594-A-G | ** | |||||||
5420740-AC-A | 5552699-AC-A | ** | |||||||
10781976-C-A | ** | ||||||||
10764254-T-A | ** | ||||||||
10764256-C-A | ** | ||||||||
10764305-T-A | ** | ||||||||
10764690-G-T | ** | ||||||||
10769410-C-CTGGTGG | ** | ||||||||
10780371-TC-T | ** | ||||||||
10780374-A-AGTTTTT | ** | ||||||||
10780385-C-T | ** | ||||||||
10782150-G-T | ** | ||||||||
10758518-C-A | ** | ||||||||
10782286-T-C | ** | ||||||||
10788000-T-A | ** | ||||||||
10788006-C-A | ** | ||||||||
10800531-A-G | ** | ||||||||
10801392-C-A | ** | ||||||||
10805337-C-T | ** | ||||||||
10805351-T-A | ** | ||||||||
10805352-C-T | ** | ||||||||
10759666-TCA-T | ** | ||||||||
10757956-A-ACTCAT | ** | ||||||||
10816359-C-T | ** | ||||||||
10693934-A-G | ** | ||||||||
10004838-T-TGACAG | 10167229-T-TGACAG | ** | |||||||
10652323-C-T | ** | ||||||||
10652331-C-T | ** | ||||||||
10653551-G-T | ** | ||||||||
10667143-C-A | ** | ||||||||
10669328-C-A | ** | ||||||||
10672859-T-C | ** | ||||||||
10693246-T-C | ** | ||||||||
10693936-T-A | ** | ||||||||
10757501-A-G | ** | ||||||||
10693946-C-T | ** | ||||||||
10748091-C-T | FT429468 | ** | |||||||
10752690-A-T | ** | ||||||||
10752699-T-C | ** | ||||||||
5426310-C-G | 5558269-C-G | ** | |||||||
10752742-C-T | ** | ||||||||
10752756-C-A | ** | ||||||||
10753122-C-A | ** | ||||||||
10757491-A-G | ** | ||||||||
10811564-C-A | ** | ||||||||
10816363-C-A | ** | ||||||||
9977050-T-C | 10139441-T-C | ** | |||||||
10942187-G-T | ** | ||||||||
10921494-AC-A | ** | ||||||||
10924407-C-A | ** | ||||||||
10930571-C-G | ** | ||||||||
10935613-A-T | ** | ||||||||
10936346-C-A | ** | ||||||||
10938012-CTCCATTCCATTCCATTTCAT-C | ** | ||||||||
10938451-C-A | ** | ||||||||
10940554-T-TC | ** | ||||||||
10950229-C-A | ** | ||||||||
10921491-C-GGTTTGA | ** | ||||||||
10954688-C-A | ** | ||||||||
10956252-T-C | ** | ||||||||
10956254-G-C | ** | ||||||||
10956270-A-G | ** | ||||||||
10969442-C-T | ** | ||||||||
10969884-C-A | ** | ||||||||
10973464-G-T | ** | ||||||||
10980100-C-A | ** | ||||||||
10921493-C-G | ** | ||||||||
10912973-A-T | ** | ||||||||
10816364-A-C | ** | ||||||||
10856934-C-A | ** | ||||||||
10817301-C-A | ** | ||||||||
10818851-C-T | ** | ||||||||
10818866-C-T | ** | ||||||||
10820208-T-A | ** | ||||||||
10829659-C-G | ** | ||||||||
10836989-A-G | ** | ||||||||
10851820-T-C | ** | ||||||||
10851831-T-G | ** | ||||||||
10856937-T-C | ** | ||||||||
10901601-C-A | FT219918 | ** | |||||||
10863209-T-C | ** | ||||||||
10880386-CCCCTCCATTG-C | ** | ||||||||
10880600-C-A | ** | ||||||||
10883328-G-T | ** | ||||||||
10887277-T-C | ** | ||||||||
10887325-C-A | ** | ||||||||
10888703-C-T | ** | ||||||||
10888714-A-T | ** | ||||||||
10889116-C-T | ** | ||||||||
9998113-G-C | 10160504-G-C | ** | |||||||
10752701-A-C | ** | ||||||||
36638-A-G | ** | ||||||||
6029103-A-G | 6161062-A-G | ** | |||||||
7348556-G-C | 7480515-G-C | ** | |||||||
7348566-T-C | 7480525-T-C | ** | |||||||
7450383-C-A | 7582342-C-A | IR1_L | ** | ||||||
7469347-C-A | 7601306-C-A | IR1_L | ** | ||||||
6085361-T-A | 6217320-T-A | ** | |||||||
7541259-C-A | 7673218-C-A | ** | |||||||
7578873-C-A | 7710832-C-A | ** | |||||||
5967215-C-A | 6099174-C-A | ** | |||||||
7341168-T-C | 7473127-T-C | ** | |||||||
5874408-C-A | 6006367-C-A | ** | |||||||
5831248-G-T | 5963207-G-T | ** | |||||||
7774216-C-A | 7906175-C-A | ** | |||||||
8051861-C-A | 8183820-C-A | ** | |||||||
8076055-A-G | 8208014-A-G | ** | |||||||
6665657-C-G | 6797616-C-G | ** | |||||||
5775051-C-T | 5907010-C-T | ** | |||||||
6085428-T-G | 6217387-T-G | ** | |||||||
7255918-T-C | 7387877-T-C | ** | |||||||
8153973-A-G | 8285932-A-G | ** | |||||||
6429709-A-G | 6561668-A-G | ** | |||||||
6593367-C-G | 6725326-C-G | ** | |||||||
6955096-T-C | 7087055-T-C | ** | |||||||
6983909-C-A | 7115868-C-A | ** | |||||||
7054098-C-A | 7186057-C-A | ** | |||||||
6519545-T-A | 6651504-T-A | ** | |||||||
7076323-C-A | 7208282-C-A | ** | |||||||
6516280-A-G | 6648239-A-G | ** | |||||||
7082900-C-A | 7214859-C-A | ** | |||||||
7241854-G-T | 7373813-G-T | ** | |||||||
7110969-C-A | 7242928-C-A | ** | |||||||
7160603-G-A | 7292562-G-A | ** | |||||||
6424722-C-A | 6556681-C-A | ** | |||||||
7160607-C-A | 7292566-C-A | ** | |||||||
7160613-C-A | 7292572-C-A | ** | |||||||
6367710-G-T | 6499669-G-T | ** | |||||||
7238086-C-A | 7370045-C-A | ** | |||||||
6265035-CACACA-C | 6396994-CACACA-C | IR3_Dst | ** | ||||||
5754951-T-G | 5886910-T-G | ** | |||||||
5831227-G-T | 5963186-G-T | ** | |||||||
8159392-CT-C | 8291351-CT-C | ** | |||||||
5608179-A-ATT | 5740138-A-ATT | ** | |||||||
5645281-A-G | 5777240-A-G | ** | |||||||
9402568-T-C | 9564959-T-C | ** | |||||||
9414223-T-C | 9576614-T-C | ** | |||||||
9500213-T-C | 9662604-T-C | ** | |||||||
9513240-C-A | 9675631-C-A | ** | |||||||
9513244-T-C | 9675635-T-C | ** | |||||||
9514975-C-A | 9677366-C-A | ** | |||||||
9330768-C-A | 9493159-C-A | ** | |||||||
9528275-A-T | 9690666-A-T | ** | |||||||
9623646-A-AT | 9786037-A-AT | IR3_Prx | ** | ||||||
9811035-T-C | 9973426-T-C | ** | |||||||
9942174-T-A | 10104565-T-A | ** | |||||||
5587145-A-T | 5719104-A-T | ** | |||||||
9945576-A-C | 10107967-A-C | ** | |||||||
9381917-C-A | 9544308-C-A | ** | |||||||
6690321-C-A | 6822280-C-A | ** | |||||||
9198137-C-T | 9360528-C-T | ** | |||||||
8216447-C-A | 8348406-C-A | ** | |||||||
5669265-C-A | 5801224-C-A | ** | |||||||
8673938-C-A | 8805897-C-A | ** | |||||||
8661218-C-A | 8793177-C-A | ** | |||||||
8913441-C-A | 9045400-C-A | ** | |||||||
9025299-C-A | 9187690-C-A | ** | |||||||
56835889-C-A,T | *** | ||||||||
4469925-G-T | 4601884-G-T | *** | |||||||
30170-T-A | *** | ||||||||
25737032-T-C | 23590885-T-C | P1_b3 | *** | ||||||
13131607-G-T | 10621093-G-T | *** | |||||||
58820600-G-C | 56770271-C-G | *** | |||||||
5603592-C-A | 5735551-C-A | *** | |||||||
25047658-C-A | 22901511-C-A | g1 | *** | ||||||
23532817-A-ATG | 21370931-A-ATG | 10×TG | *** | ||||||
25016887-C-T | 22870740-C-T | g1 | *** | ||||||
56742744-T-C | *** | ||||||||
10020621-C-T | 10183012-C-T | *** | |||||||
14373466-A-C | 12252762-A-C | *** | |||||||
23728354-A-G | 21566468-A-G | *** | |||||||
13728980-A-G | 11573304-A-G | *** | |||||||
11030187-C-G | *** | ||||||||
56826449-A-T | *** | ||||||||
6120278-C-A | 6252237-C-A | *** | |||||||
11017783-C-A | *** | ||||||||
18965971-T-C | 16854091-T-C | *** | |||||||
22426423-T-C | 20264537-T-C | DYZ19 | *** | ||||||
58820591-T-A | 56770280-A-T | *** | |||||||
22241504-A-C | 20079618-A-C | DYZ19 | *** | ||||||
22276813-G-A | 20114927-G-A | DYZ19 | *** | ||||||
22359155-G-A | 20197269-G-A | DYZ19 | *** | ||||||
11015891-T-C | *** | ||||||||
11015886-T-C | *** | ||||||||
28645671-T-C | 26499524-T-C | *** | |||||||
22230754-A-C | 20068868-A-C | DYZ19 | *** | *** | |||||
21566487-T-C | 19404601-T-C | *** | |||||||
13488923-G-A | 11333247-G-A | *** | |||||||
22542680-G-A | 20380794-G-A | *** | |||||||
23048221-A-C | 20886335-A-C | *** | |||||||
21163123-C-A | 19001237-C-A | *** | |||||||
8556375-G-C | 8688334-G-C | *** | |||||||
2971127-CATACTATTTTTTTAAAAATAG-C | 3103086-CATACTATTTTTTTAAAAATAG-C | *** | |||||||
21323312-C-T | 19161426-C-T | *** | |||||||
11657150-C-A | *** | ||||||||
3817816-C-A | 3949775-C-A | *** | |||||||
10785242-C-G | *** | ||||||||
10755381-C-A,G | *** | ||||||||
21323317-A-G | 19161431-A-G | FGC8813 | *** | ||||||
15895207-A-G | 13783327-A-G | *** | |||||||
21140025-C-A | 18978139-C-A | *** | |||||||
22429640-A-G | 20267754-A-G | DYZ19 | *** | ||||||
23048219-C-A | 20886333-C-A | *** | |||||||
22296121-C-A | 20134235-C-A | DYZ19 | *** | ||||||
5587048-G-T | 5719007-G-T | *** | |||||||
10659254-C-A | *** | ||||||||
15168689-A-G | 13056775-A-G | *** | |||||||
10659177-C-T | *** | ||||||||
15132065-A-ATT | 13020152-A-ATT | 14×T | *** | ||||||
21668735-T-A | 19506849-T-A | *** | |||||||
21387207-G-T | 19225321-G-T | *** | |||||||
22542662-C-G | 20380776-C-G | *** | |||||||
8110488-A-G | 8242447-A-G | *** | |||||||
10924324-T-C | *** | ||||||||
23512404-A-G | 21350518-A-G | *** | |||||||
4352014-T-A | 4483973-T-A | *** | |||||||
10924321-C-T | *** | ||||||||
13642965-C-T | 11487289-C-T | *** | |||||||
17238545-C-A | 15126665-C-A | *** | |||||||
17211076-C-A | 15099196-C-A | *** | |||||||
24047447-G-A | 21901300-G-A | *** | |||||||
24221449-G-A | 22075302-G-A | P3_b1 | *** | ||||||
24221453-A-C | 22075306-A-C | P3_b1 | *** | ||||||
3961361-C-T | 4093320-C-T | *** | |||||||
7301756-A-G | 7433715-A-G | *** | |||||||
23512403-C-T | 21350517-C-T | *** | |||||||
16320155-A-G | 14208275-A-G | *** | |||||||
23419665-G-A | 21257779-G-A | *** | |||||||
16645989-G-C | 14534109-G-C | *** | |||||||
16645979-A-G | 14534099-A-G | *** | |||||||
7360798-C-A | 7492757-C-A | *** | |||||||
10796681-C-CCGCT | *** | ||||||||
7630104-G-T | 7762063-G-T | *** | |||||||
14027480-T-C | 11906774-T-C | *** | |||||||
14027481-G-A | 11906775-G-A | *** | |||||||
14027498-T-TCTCTTCAG | 11906792-T-TCTCTTCAG | *** | |||||||
7721524-GC-G | 7853483-GC-G | *** | |||||||
23512407-T-C | 21350521-T-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.
Uncertain Mutations
NGS tests don't always cover all of the Y chromosome and, even when they do, the results can be inconclusive. The following mutations don't have clear results and have been assumed to be positive or negative. For those mutations that are assumed to be positive, the assumed SNP/INDEL will likely be found on the tree in some upstream block. It is unclear if it should be placed upstream of your results or parallel to them. The situation is reversed for mutations assumed negative. Those SNPs/INDELs will likely be found on a parallel branch on the tree, and it is unclear if they should be positioned upstream. As more results come in, the ambiguity may resolve itself, or it may be necessary to consult the BAM file for your test (available from FamilyTreeDNA or FullGenomes Corp) or by direct SNP testing (Sanger Sequencing - YSEQ or FamilyTreeDNA).
SNPs/INDELs:
Block | Region | POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Names | Notes |
---|---|---|---|---|---|
5203 | 22600271-T-C | 20438385-T-C | FGC12948 | Uncertain, but assumed positive. |
Age Analysis Information (work in progress)
All | McDonald | YFull | |
Kit: 80603 | 10962089 | 7994697 | 8083017 |
Kit: 80603 | 10047233 | 8189755 | 8042677 |
Used in age calculations | 10962089 | 8189755 | 8083017 |
Counts of SNPs | 7 | 10 |
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