Broom
BigY3: 12311, FTDNA: 12311, BigY2: 12311MDKA Birth: United Kingdom
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | BigY3 12311 | FTDNA 12311 | BigY2 12311 |
---|---|---|---|---|---|---|---|---|---|---|
13449995-T-C | 11294319-T-C | A* | ||||||||
20050963-A-T | 17939083-A-T | P5_Prx | 16×T | A* | ||||||
2747802-T-C | 2879761-T-C | FT116395 | Y | Y | ** | + | ||||
3016070-C-T | 3148029-C-T | * | ||||||||
10004846-C-G | 10167237-C-G | ** | ||||||||
13142425-T-C | 10631911-T-C | ** | ||||||||
13610767-C-T | 11455091-C-T | PF3687 | ** | |||||||
14624294-C-A | 12512494-T-A | ** | ||||||||
14805998-G-A | 12694069-G-A | FTB81134 | ** | |||||||
16978114-G-A | 14866234-G-A | CTS6556 | ** | |||||||
16978189-G-A | 14866309-G-A | CTS6557 | ** | |||||||
22364242-A-C | 20202356-A-C | DYZ19 | ** | |||||||
27809465-T-C | 25663318-T-C | P1_Y2 | ** | |||||||
22962204-A-T | 20800318-A-T | ** | ||||||||
16738220-C-T | 14626340-C-T | Y2723 FGC5082 | ** | |||||||
16828700-C-T | 14716820-C-T | Y17436 | ** | |||||||
27127743-C-T | 24981596-C-T | P1_g3 | ** | |||||||
28755774-C-T | 26609627-C-T | CTS12939 | ** | |||||||
5387429-TC-T | 5519388-TC-T | ** | ||||||||
20404435-T-A | 18242549-T-A | P5_Dst | ** | |||||||
9371543-C-T | 9533934-C-T | ** | ||||||||
10999215-G-T | ** | |||||||||
22894151-GAAAA-G | 20732265-GAAAA-G | 28×A | ** | |||||||
10775874-C-G | FT64460 | ** | ||||||||
14432390-C-A | 12311663-C-A | ** | ||||||||
10836483-C-A | ** | |||||||||
15733761-T-A | 13621881-T-A | ** | ||||||||
14933911-C-A | 12821976-C-A | ** | ||||||||
16226377-C-A | 14114497-C-A | ** | ||||||||
10760445-A-G | ** | |||||||||
22267919-G-C | 20106033-G-C | DYZ19 | ** | |||||||
6126028-C-A | 6257987-C-A | ** | ||||||||
8674107-C-A | 8806066-C-A | ** | ||||||||
20888603-AG-C | 18726717-AG-C | P4_Dst | ** | |||||||
24910920-G-T | 22764773-G-T | g1 | ** | |||||||
7270311-T-G | 7402270-T-G | ** | ||||||||
25990685-A-G | 23844538-A-G | P1_Y1 | ** | |||||||
20387098-A-AG | 18225212-A-AG | P5_Dst | ** | |||||||
24290856-G-A | 22144709-G-A | P3_t1 | ** | |||||||
7029922-GGAGAGA-G | 7161881-GGAGAGA-G | 10×GA | ** | |||||||
12379391-C-A | ** | |||||||||
6809301-C-A | 6941260-C-A | ** | ||||||||
16897640-TC-T | 14785760-TC-T | ** | ||||||||
10883133-A-C | FT435413 | ** | ||||||||
16539767-G-T | 14427887-G-T | ** | ||||||||
56771114-G-T | ** | |||||||||
27719839-G-T | 25573692-G-T | P1_Y2 | ** | |||||||
14702488-C-A | 12590554-C-A | ** | ||||||||
8052616-C-A | 8184575-C-A | ** | ||||||||
10883065-A-T | ** | |||||||||
13460476-C-A | 11304800-C-A | ** | ||||||||
13705514-T-A | 11549838-T-A | DYZ17 | ** | |||||||
13880762-G-T | 11760056-G-T | ** | ||||||||
27616514-G-T | 25470367-G-T | P1_Y2 | ** | |||||||
18810962-C-A | 16699082-C-A | ** | ||||||||
27616488-G-T | 25470341-G-T | P1_Y2 | ** | |||||||
8314328-AT-A | 8446287-AT-A | ** | ||||||||
13922509-C-A | 11801803-C-A | ** | ||||||||
21515668-C-A | 19353782-C-A | ** | ||||||||
10956679-C-A | ** | |||||||||
19206731-T-G | 17094851-T-G | ** | ||||||||
56771132-T-C | ** | |||||||||
56771169-T-C | ** | |||||||||
3790878-G-GTATATATA | 3922837-G-GTATATATA | 21×TA | ** | |||||||
23455037-AATT-A | 21293151-AATT-A | 6×ATT | ** | |||||||
4996087-C-A | 5128046-C-A | ** | ||||||||
14531438-C-A | 12419639-C-A | A19204 | ** | |||||||
15397229-C-A | 13285349-C-A | ** | ||||||||
20761015-A-AG | 18599129-A-AG | P4_Prx | ** | |||||||
20404432-C-A | 18242546-C-A | P5_Dst | ** | |||||||
10962922-C-G | ** | |||||||||
17634637-C-A | 15522757-C-A | ** | ||||||||
20404431-G-A | 18242545-G-A | P5_Dst | ** | |||||||
21839981-A-AT | 19678095-A-AT | ** | ||||||||
23723531-G-A | 21561645-G-A | ** | ||||||||
17448655-C-A | 15336775-C-A | ** | ||||||||
22103586-C-A | 19941700-C-A | ** | ||||||||
17722697-C-A | 15610817-C-A | ** | ||||||||
5412448-C-A | 5544407-C-A | ** | ||||||||
21325850-C-A | 19163964-C-A | ** | ||||||||
14492697-G-T | 12380894-G-T | ** | ||||||||
9502549-A-C | 9664940-A-C | ** | ||||||||
8713764-C-A | 8845723-C-A | ** | ||||||||
18278086-G-T | 16166206-G-T | P6_Prx | ** | |||||||
18196518-C-T | 16084638-C-T | ** | ||||||||
10999178-G-A | FT439821 | ** | ||||||||
19128605-C-A | 17016725-C-A | ** | ||||||||
6305899-G-A | 6437858-G-A | IR3_Dst | ** | |||||||
14624327-T-A | 12512527-T-A | ** | ||||||||
17803249-C-A | 15691369-C-A | ** | ||||||||
14553251-C-A | 12441452-C-A | FT111313 | ** | |||||||
6580523-C-A | 6712482-C-A | ** | ||||||||
24875590-C-A | 22729443-C-A | g1 | ** | |||||||
10921170-C-A | ** | |||||||||
9773418-C-A | 9935809-C-A | ** | ||||||||
18184920-C-A | 16073040-C-A | ** | ||||||||
23188659-C-A | 21026773-C-A | ** | ||||||||
16226369-C-A | 14114489-C-A | ** | ||||||||
21534736-C-A | 19372850-C-A | ** | ||||||||
3817966-C-A | 3949925-C-A | ** | ||||||||
3500642-C-A | 3632601-C-A | ** | ||||||||
8314329-T-A | 8446288-T-A | ** | ||||||||
25395691-G-T | 23249544-G-T | P2_r2 | ** | |||||||
10829108-C-A | ** | |||||||||
16410241-C-A | 14298361-C-A | ** | ||||||||
23807569-A-G | 21645683-A-G | ** | ||||||||
17940092-T-C | 15828212-T-C | ** | ||||||||
56844078-G-T | ** | |||||||||
19536857-C-A | 17424977-C-A | ** | ||||||||
13257521-C-A | 11101845-C-A | ** | ||||||||
6642986-C-A | 6774945-C-A | ** | ||||||||
9030102-G-T | 9192493-G-T | ** | ||||||||
5059651-C-A | 5191610-C-A | ** | ||||||||
14871078-C-A | 12759148-C-A | ** | ||||||||
17502902-G-T | 15391022-G-T | ** | ||||||||
10800595-C-T | ** | |||||||||
10051340-C-A | 10213731-C-A | ** | ||||||||
19268268-C-A | 17156388-C-A | ** | ||||||||
15197510-C-A | 13085596-C-A | ** | ||||||||
6305885-A-C | 6437844-A-C | IR3_Dst | ** | |||||||
6305892-T-C | 6437851-T-C | IR3_Dst | ** | |||||||
22060490-C-A | 19898604-C-A | ** | ||||||||
16423565-C-A | 14311685-C-A | ** | ||||||||
10870578-G-T | ** | |||||||||
10999169-C-T | ** | |||||||||
5926938-G-T | 6058897-G-T | ** | ||||||||
22810705-C-A | 20648819-C-A | ** | ||||||||
6177605-C-A | 6309564-C-A | IR3_Dst | ** | |||||||
16889884-C-A | 14778004-C-A | ** | ||||||||
10931486-G-T | ** | |||||||||
10775772-T-G | ** | |||||||||
10883080-C-T | FT97421 | ** | ||||||||
10883142-C-A | ** | |||||||||
10883152-C-T | ** | |||||||||
6862019-C-A | 6993978-C-A | ** | ||||||||
18733482-C-A | 16621602-C-A | ** | ||||||||
10871001-C-A | ** | |||||||||
18138205-C-A | 16026325-C-A | ** | ||||||||
9446280-G-T | 9608671-G-T | ** | ||||||||
16921383-C-A | 14809503-C-A | ** | ||||||||
14032477-C-A | 11911771-C-A | ** | ||||||||
10991699-C-A | FT219931 | ** | ||||||||
7238885-C-A | 7370844-C-A | ** | ||||||||
10783994-C-A | ** | |||||||||
21164718-C-A | 19002832-C-A | ** | ||||||||
10984956-T-C | FT73118 | ** | ||||||||
19044247-C-A | 16932367-C-A | ** | ||||||||
9025486-C-A | 9187877-C-A | ** | ||||||||
14992411-G-A | 12880496-G-A | ** | ||||||||
27736673-A-AT | 25590526-A-AT | P1_Y2 | ** | |||||||
14529040-C-A | 12417241-C-A | ** | ||||||||
17503802-G-T | 15391922-G-T | ** | ||||||||
21477027-C-A | 19315141-C-A | ** | ||||||||
21048265-C-A | 18886379-C-A | ** | ||||||||
17355499-C-A | 15243619-C-A | ** | ||||||||
14431110-C-A | 12310383-C-A | ** | ||||||||
10962913-C-A | ** | |||||||||
22124021-G-C | 19962135-G-C | ** | ||||||||
4929373-C-A | 5061332-C-A | ** | ||||||||
10673515-T-C | ** | |||||||||
11651440-C-A | DYZ17 | ** | ||||||||
24389983-C-A | 22243836-C-A | ** | ||||||||
3012544-G-T | 3144503-G-T | ** | ||||||||
4271953-C-A | 4403912-C-A | ** | ||||||||
9865233-C-A | 10027624-C-A | ** | ||||||||
9461859-G-A | 9624250-G-A | ** | ||||||||
4902965-G-T | 5034924-G-T | ** | ||||||||
10800515-C-A | ** | |||||||||
25647102-C-A | 23500955-C-A | P1_b3 | ** | |||||||
10850397-G-T | ** | |||||||||
13996434-C-A | 11875728-C-A | ** | ||||||||
10999209-A-C | ** | |||||||||
23625626-C-A | 21463740-C-A | ** | ||||||||
9461799-C-A | 9624190-C-A | ** | ||||||||
26025623-T-TG | 23879476-T-TG | P1_Y1 | ** | |||||||
6957686-C-A | 7089645-C-A | ** | ||||||||
11666074-G-A | DYZ17 | ** | ||||||||
2746749-C-A | 2878708-C-A | ** | ||||||||
2767929-C-T | 2899888-C-T | ** | ||||||||
2817039-G-T | 2948998-G-T | ** | ||||||||
2854875-C-T | 2986834-C-T | ** | ||||||||
3101233-T-G | 3233192-T-G | ** | ||||||||
3101286-T-A | 3233245-T-A | ** | ||||||||
3303379-GTCTA-G | 3435338-GTCTA-G | 4×TCTA | ** | |||||||
3330898-T-C | 3462857-T-C | ** | ||||||||
3625258-C-T | 3757217-C-T | ** | ||||||||
3663062-T-A | 3795021-T-A | ** | ||||||||
3706629-A-T | 3838588-A-T | ** | ||||||||
3706636-T-C | 3838595-T-C | ** | ||||||||
3732203-T-C | 3864162-T-C | ** | ||||||||
3965343-C-G | 4097302-C-G | ** | ||||||||
4437917-C-A | 4569876-C-A | ** | ||||||||
4444452-C-T | 4576411-C-T | ** | ||||||||
4540290-C-T | 4672249-C-T | ** | ||||||||
4568332-A-G | 4700291-A-G | ** | ||||||||
4672359-C-T | 4804318-C-T | ** | ||||||||
4740962-T-A | 4872921-T-A | ** | ||||||||
4779677-C-A | 4911636-C-A | ** | ||||||||
4779703-C-A | 4911662-C-A | ** | ||||||||
4937022-C-A | 5068981-C-A | ** | ||||||||
5061315-G-T | 5193274-G-T | ** | ||||||||
5216288-T-A | 5348247-T-A | ** | ||||||||
5310209-T-C | 5442168-T-C | ** | ||||||||
5387426-G-T | 5519385-G-T | ** | ||||||||
5461816-T-TG | 5593775-T-TG | ** | ||||||||
5586597-C-A | 5718556-C-A | ** | ||||||||
5844953-A-G | 5976912-A-G | ** | ||||||||
5882941-C-A | 6014900-C-A | ** | ||||||||
5966015-A-G | 6097974-A-G | ** | ||||||||
6096867-T-C | 6228826-T-C | ** | ||||||||
6305886-C-A | 6437845-C-A | IR3_Dst | ** | |||||||
6305907-T-G | 6437866-T-G | IR3_Dst | ** | |||||||
6356284-C-G | 6488243-C-G | ** | ||||||||
6362056-C-A | 6494015-C-A | ** | ||||||||
6537331-C-A | 6669290-C-A | ** | ||||||||
6577146-T-G | 6709105-T-G | ** | ||||||||
6604325-C-A | 6736284-C-A | ** | ||||||||
6682651-C-A | 6814610-C-A | ** | ||||||||
6730544-G-C | 6862503-G-C | ** | ||||||||
6730552-G-T | 6862511-G-T | ** | ||||||||
6767915-A-G | 6899874-A-G | ** | ||||||||
6825449-T-G | 6957408-T-G | ** | ||||||||
6833285-A-T | 6965244-A-T | ** | ||||||||
6867622-C-A | 6999581-C-A | ** | ||||||||
7033400-C-A | 7165359-C-A | ** | ||||||||
7111970-C-T | 7243929-C-T | ** | ||||||||
7131226-T-C | 7263185-T-C | ** | ||||||||
7131390-C-CT | 7263349-C-CT | ** | ||||||||
7242431-C-A | 7374390-C-A | ** | ||||||||
7299228-A-T | 7431187-A-T | ** | ||||||||
7329315-C-A | 7461274-C-A | ** | ||||||||
7363213-T-C | 7495172-T-C | ** | ||||||||
7454453-T-C | 7586412-T-C | IR1_L | ** | |||||||
7463956-G-A | 7595915-G-A | IR1_L | ** | |||||||
7470585-A-T | 7602544-A-T | IR1_L | ** | |||||||
7524721-T-A | 7656680-T-A | ** | ||||||||
7613943-C-T | 7745902-C-T | ** | ||||||||
7754781-T-C | 7886740-T-C | ** | ||||||||
7824749-T-C | 7956708-T-C | FT65006 | ** | |||||||
7886539-C-A | 8018498-C-A | ** | ||||||||
7896681-G-A | 8028640-G-A | ** | ||||||||
7933647-G-A | 8065606-G-A | ** | ||||||||
7966666-T-G | 8098625-T-G | ** | ||||||||
7970907-G-T | 8102866-G-T | ** | ||||||||
7994163-T-G | 8126122-T-G | ** | ||||||||
8072300-A-G | 8204259-A-G | ** | ||||||||
8481992-T-A | 8613951-T-A | ** | ||||||||
8853455-G-C | 8985414-G-C | ** | ||||||||
8907843-T-A | 9039802-T-A | ** | ||||||||
9108488-G-A | ** | |||||||||
9215034-CA-C | 9377425-CA-C | ** | ||||||||
9340252-C-A | 9502643-C-A | ** | ||||||||
9453924-C-A | 9616315-C-A | ** | ||||||||
9605424-T-G | 9767815-T-G | IR3_Prx | ** | |||||||
9761095-T-C | 9923486-T-C | ** | ||||||||
9936573-A-T | 10098964-A-T | ** | ||||||||
9956375-AAAAAAG-A | 10118766-AAAAAAG-A | ** | ||||||||
9964468-G-T | 10126859-G-T | ** | ||||||||
10011106-T-A | 10173497-T-A | ** | ||||||||
10654855-C-A | ** | |||||||||
10655050-A-C | ** | |||||||||
10656384-A-G | ** | |||||||||
10672440-A-G | ** | |||||||||
10679671-C-A | ** | |||||||||
10688632-C-A | ** | |||||||||
10752599-C-A | ** | |||||||||
10753773-A-T | ** | |||||||||
10764017-C-A | ** | |||||||||
10764899-C-A | ** | |||||||||
10772694-T-C | ** | |||||||||
10774117-G-T | ** | |||||||||
10777331-T-C | ** | |||||||||
10794307-T-A | ** | |||||||||
10794816-C-A | ** | |||||||||
10802456-C-T | ** | |||||||||
10839884-TTCCATTCCAC-T | ** | |||||||||
10883076-T-C | ** | |||||||||
10883094-TCTCCA-C | ** | |||||||||
10883130-T-G | ** | |||||||||
10883135-T-G | ** | |||||||||
10911384-A-T | ** | |||||||||
10931999-C-A | ** | |||||||||
10936164-T-C | ** | |||||||||
10954353-T-G | ** | |||||||||
10956516-A-G | ** | |||||||||
10983110-C-T | ** | |||||||||
10983217-A-C | ** | |||||||||
10985010-A-G | ** | |||||||||
10986859-C-A | ** | |||||||||
10999205-T-C | ** | |||||||||
11007468-C-A | ** | |||||||||
11008990-A-T | ** | |||||||||
11017674-A-C | ** | |||||||||
11017697-C-A | ** | |||||||||
13290975-A-G | 11135299-A-G | FT442391 | ** | |||||||
13309822-A-T | 11154146-A-T | ** | ||||||||
13324870-T-C | 11169194-T-C | ** | ||||||||
13324902-A-C | 11169226-A-C | ** | ||||||||
13543332-C-A | 11387656-C-A | ** | ||||||||
13587821-T-C | 11432145-T-C | ** | ||||||||
13633056-A-G | 11477380-A-G | ** | ||||||||
13644802-A-G | 11489126-A-G | ** | ||||||||
13705500-G-GGTCTC | 11549824-G-GGTCTC | DYZ17 | ** | |||||||
13721307-G-A | 11565631-G-A | DYZ17 | ** | |||||||
11650575-T-C | DYZ17 | ** | ||||||||
11651930-G-T | DYZ17 | ** | ||||||||
13798678-G-T | 11677972-G-T | DYZ17 | ** | |||||||
13860731-A-G | 11740025-A-G | DYZ17 | ** | |||||||
13865720-A-T | 11745014-A-T | DYZ17 | ** | |||||||
13973167-C-A | 11852461-C-A | ** | ||||||||
13989104-TA-T | 11868398-TA-T | ** | ||||||||
13996545-C-A | 11875839-C-A | ** | ||||||||
14000340-G-A | 11879634-G-A | FT143704 | ** | |||||||
14099741-A-G | 11979035-A-G | ** | ||||||||
14184595-G-A | 12063889-G-A | ** | ||||||||
14261725-A-T | 12141019-A-T | ** | ||||||||
14345092-G-T | 12224387-G-T | ** | ||||||||
14354409-T-G | 12233704-T-G | ** | ||||||||
14367696-C-T | 12246992-C-T | ** | ||||||||
14413215-A-AG | 12292512-A-AG | ** | ||||||||
14458007-C-A | 12337280-C-A | ** | ||||||||
14464526-C-A | 12343799-C-A | ** | ||||||||
14473722-T-G | 12352991-T-G | ** | ||||||||
14555015-G-C | 12443216-G-C | ** | ||||||||
14597928-TA-T | 12486128-TA-T | ** | ||||||||
14676548-C-A | 12564614-C-A | ** | ||||||||
14685271-C-A | 12573337-C-A | ** | ||||||||
14695605-G-T | 12583671-G-T | ** | ||||||||
14724468-T-C | 12612536-T-C | ** | ||||||||
14784765-G-A | 12672835-G-A | ** | ||||||||
14815874-C-A | 12703945-C-A | ** | ||||||||
14825828-T-C | 12713895-T-C | ** | ||||||||
14844538-A-G | 12732604-A-G | ** | ||||||||
14931939-C-A | 12820004-C-A | ** | ||||||||
14933917-C-A | 12821982-C-A | ** | ||||||||
14967268-C-A | 12855343-C-A | ** | ||||||||
14981786-A-C | 12869862-A-C | ** | ||||||||
14982012-T-G | 12870080-T-G | ** | ||||||||
15093651-C-A | 12981739-C-A | ** | ||||||||
15171281-T-G | 13059367-T-G | ** | ||||||||
15185233-C-G | 13073319-C-G | ** | ||||||||
15391358-G-A | 13279478-G-A | ** | ||||||||
15394431-C-T | 13282551-C-T | ** | ||||||||
15397169-C-G | 13285289-C-G | ** | ||||||||
15397214-A-G | 13285334-A-G | ** | ||||||||
15397253-A-C | 13285373-A-C | ** | ||||||||
15397286-A-G | 13285406-A-G | ** | ||||||||
15397307-T-G | 13285427-T-G | ** | ||||||||
15556868-T-A | 13444988-T-A | ** | ||||||||
15556870-T-A | 13444990-T-A | ** | ||||||||
15623402-C-A | 13511522-C-A | ** | ||||||||
15688977-G-A | 13577097-G-A | FGC73957 | ** | |||||||
15787968-T-C | 13676088-T-C | ** | ||||||||
15798276-C-T | 13686396-C-T | ** | ||||||||
15870532-C-A | 13758652-C-A | ** | ||||||||
15894635-T-C | 13782755-T-C | ** | ||||||||
15901458-A-T | 13789578-A-T | ** | ||||||||
15940231-C-T | 13828351-C-T | ** | ||||||||
16006837-G-T | 13894957-G-T | ** | ||||||||
16015711-A-G | 13903831-A-G | ** | ||||||||
16052753-T-C | 13940873-T-C | ** | ||||||||
16053503-T-C | 13941623-T-C | ** | ||||||||
16067182-A-T | 13955302-A-T | ** | ||||||||
16131383-T-C | 14019503-T-C | P8_Prx | ** | |||||||
16213646-CA-C | 14101766-CA-C | ** | ||||||||
16226367-T-A | 14114487-T-A | ** | ||||||||
16276163-C-A | 14164283-C-A | ** | ||||||||
16278553-G-A | 14166673-G-A | FT5515 | ** | |||||||
16284123-C-G | 14172243-C-G | ** | ||||||||
16536027-C-A | 14424147-C-A | ** | ||||||||
16549599-A-T | 14437719-A-T | ** | ||||||||
16549603-G-A | 14437723-G-A | ** | ||||||||
16619981-G-T | 14508101-G-T | ** | ||||||||
16648240-C-T | 14536360-C-T | ** | ||||||||
16721368-G-T | 14609488-G-T | ** | ||||||||
16790915-C-A | 14679035-C-A | ** | ||||||||
16897644-A-C | 14785764-A-C | ** | ||||||||
17152662-A-G | 15040782-A-G | ** | ||||||||
17167822-C-A | 15055942-C-A | ** | ||||||||
17222291-C-A | 15110411-C-A | ** | ||||||||
17315137-A-G | 15203257-A-G | ** | ||||||||
17332578-T-C | 15220698-T-C | ** | ||||||||
17367514-G-A | 15255634-G-A | ** | ||||||||
17425002-G-C | 15313122-G-C | ** | ||||||||
17502861-A-T | 15390981-A-T | ** | ||||||||
17504584-C-A | 15392704-C-A | ** | ||||||||
17504610-C-A | 15392730-C-A | ** | ||||||||
17524115-C-A | 15412235-C-A | ** | ||||||||
17575128-C-A | 15463248-C-A | ** | ||||||||
17596413-T-A | 15484533-T-A | ** | ||||||||
17616839-A-C | 15504959-A-C | ** | ||||||||
17616849-A-T | 15504969-A-T | ** | ||||||||
17714696-C-A | 15602816-C-A | ** | ||||||||
17753820-G-T | 15641940-G-T | ** | ||||||||
17944937-T-A | 15833057-T-A | ** | ||||||||
18080559-G-T | 15968679-G-T | ** | ||||||||
18093921-A-C | 15982041-A-C | ** | ||||||||
18172893-A-G | 16061013-A-G | ** | ||||||||
18191364-A-G | 16079484-A-G | ** | ||||||||
18263666-A-T | 16151786-A-T | ** | ||||||||
18425322-A-T | 16313442-A-T | P6_Gap | ** | |||||||
18454685-C-A | 16342805-C-A | P6_Dst | ** | |||||||
18589821-C-A | 16477941-C-A | ** | ||||||||
18628061-A-C | 16516181-A-C | ** | ||||||||
18728939-CAAAT-C | 16617059-CAAAT-C | ** | ||||||||
18892516-T-A | 16780636-T-A | ** | ||||||||
18925339-A-G | 16813459-A-G | ** | ||||||||
19155660-G-T | 17043780-G-T | ** | ||||||||
19187408-TTTTTTG-T | 17075528-TTTTTTG-T | ** | ||||||||
19248334-T-C | 17136454-T-C | ** | ||||||||
19365373-C-A | 17253493-C-A | ** | ||||||||
19393331-T-A | 17281451-T-A | ** | ||||||||
19398113-G-C | 17286233-G-C | ** | ||||||||
19925910-TC-T | 17814030-TC-T | P5_Prx | ** | |||||||
19925918-C-CT | 17814038-C-CT | P5_Prx | ** | |||||||
19925926-T-A | 17814046-T-A | P5_Prx | ** | |||||||
20074020-G-GTC | 17962140-G-GTC | P5_Dst | ** | |||||||
20404417-G-T | 18242531-G-T | P5_Dst | ** | |||||||
20473385-T-G | 18311499-T-G | P5_Dst | ** | |||||||
20548372-A-G | 18386486-A-G | P5_Dst | ** | |||||||
21012331-C-T | 18850445-C-T | P4_Dst | ** | |||||||
21069995-A-G | 18908109-A-G | ** | ||||||||
21087078-C-A | 18925192-C-A | ** | ||||||||
21095775-C-A | 18933889-C-A | ** | ||||||||
21108456-C-T | 18946570-C-T | ** | ||||||||
21127358-C-A | 18965472-C-A | ** | ||||||||
21132724-C-T | 18970838-C-T | ** | ||||||||
21136783-C-A | 18974897-C-A | ** | ||||||||
21212363-C-T | 19050477-C-T | ** | ||||||||
21225126-G-A | 19063240-G-A | ** | ||||||||
21346278-A-G | 19184392-A-G | ** | ||||||||
21368833-C-A | 19206947-C-A | ** | ||||||||
21503279-T-C | 19341393-T-C | ** | ||||||||
21614729-T-C | 19452843-T-C | 11×A | ** | |||||||
21658508-C-A | 19496622-C-A | ** | ||||||||
21665582-T-C | 19503696-T-C | ** | ||||||||
21850596-G-T | 19688710-G-T | ** | ||||||||
21996370-T-A | 19834484-T-A | ** | ||||||||
22077359-A-G | 19915473-A-G | ** | ||||||||
22093097-C-A | 19931211-C-A | ** | ||||||||
22205635-A-C | 20043749-A-C | ** | ||||||||
22262619-C-T | 20100733-C-T | DYZ19 | ** | |||||||
22489659-T-A | 20327773-T-A | DYZ19 | ** | |||||||
22586986-T-C | 20425100-T-C | ** | ||||||||
22592442-C-T | 20430556-C-T | ** | ||||||||
22611975-C-A | 20450089-C-A | ** | ||||||||
22653312-A-T | 20491426-A-T | ** | ||||||||
22864353-T-G | 20702467-T-G | ** | ||||||||
22876516-A-T | 20714630-A-T | ** | ||||||||
23046119-C-T | 20884233-C-T | ** | ||||||||
23052566-G-A | 20890680-G-A | ** | ||||||||
23202856-C-A | 21040970-C-A | ** | ||||||||
23255305-T-TC | 21093419-T-TC | ** | ||||||||
23397251-C-A | 21235365-C-A | ** | ||||||||
23475562-C-T | 21313676-C-T | ** | ||||||||
23475588-G-T | 21313702-G-T | ** | ||||||||
23522614-C-G | 21360728-C-G | ** | ||||||||
23529068-G-T | 21367182-G-T | FT240778 | ** | |||||||
23569302-C-A | 21407416-C-A | ** | ||||||||
23569566-C-T | 21407680-C-T | ** | ||||||||
21754253-A-T | ** | |||||||||
23952622-C-A | 21806475-C-A | ** | ||||||||
23997658-C-A | 21851511-C-A | ** | ||||||||
24280809-C-T | 22134662-C-T | P3_t1 | ** | |||||||
24406276-G-T | 22260129-G-T | ** | ||||||||
24408986-A-C | 22262839-A-C | ** | ||||||||
24858108-A-C | 22711961-A-C | IR1_R | ** | |||||||
26029773-T-G | 23883626-T-G | P1_Y1 | ** | |||||||
26242332-A-G | 24096185-A-G | P1_Y1 | ** | |||||||
26440660-A-T | 24294513-A-T | P1_Y1 | ** | |||||||
26563902-C-T | 24417755-C-T | P1_g2 | ** | |||||||
27127723-C-T | 24981576-C-T | P1_g3 | ** | |||||||
27540966-AGCCAAC-A | 25394819-AGCCAAC-A | P1_Y2 | ** | |||||||
27856451-T-A | 25710304-T-A | P1_Y2 | ** | |||||||
27872563-T-G | 25726416-T-G | P1_Y2 | ** | |||||||
27872564-TGA-T | 25726417-TGA-T | P1_Y2 | ** | |||||||
28429398-CT-C | 26283251-CT-C | P1_gr2 | ** | |||||||
28458453-G-T | 26312306-G-T | ** | ||||||||
28458589-G-T | 26312442-G-T | ** | ||||||||
28462378-A-T | 26316231-A-T | ** | ||||||||
28483666-A-G | 26337519-A-G | ** | ||||||||
28551080-G-T | 26404933-G-T | ** | ||||||||
28633702-G-T | 26487555-G-T | ** | ||||||||
28673603-T-C | 26527456-T-C | ** | ||||||||
28689097-T-C | 26542950-T-C | ** | ||||||||
28700679-T-C | 26554532-T-C | ** | ||||||||
28720230-C-T | 26574083-C-T | ** | ||||||||
28732040-T-C | 26585893-T-C | ** | ||||||||
28762684-C-A | 26616537-C-A | ** | ||||||||
28798963-T-A | 26652816-T-A | ** | ||||||||
56848401-A-G | ** | |||||||||
56848414-A-G | ** | |||||||||
56848435-G-A | ** | |||||||||
56848441-T-C | ** | |||||||||
56862548-C-A | ** | |||||||||
56869844-T-A | ** | |||||||||
4989199-C-T | 5121158-C-T | ** | ||||||||
8901176-A-G | 9033135-A-G | ** | ||||||||
14304655-T-C | 12183949-T-C | ** | ||||||||
20339835-A-AG | 18177949-A-AG | P5_Dst | ** | |||||||
20459147-A-G | 18297261-A-G | P5_Dst | ** | |||||||
13664783-T-A | 11509107-T-A | DYZ17 | *** | |||||||
13843488-C-T | 11722782-C-T | BY47123 | DYZ17 | *** | ||||||
28787595-G-A | 26641448-G-A | BY227258 | *** | |||||||
13446527-C-CTCCAT,T | 11290851-C-CTCCAT,T | 16×TCCAT | *** | |||||||
13869792-A-G | 11749086-A-G | DYZ17 | *** | |||||||
13692467-A-C | 11536791-A-C | BY88723 | DYZ17 | *** | ||||||
13143859-C-G | 10633345-C-G | *** | ||||||||
13143880-C-A | 10633366-C-A | *** | ||||||||
13287651-G-C | 11131975-G-C | *** | ||||||||
13447573-G-GCATTC | 11291897-G-GCATTC | *** | ||||||||
13452608-C-CTCCAT | 11296932-C-CTCCAT | *** | ||||||||
13452853-T-C,TGATTCCATTC | 11297177-T-C,TGATTCCATTC | *** | ||||||||
13454293-A-T | 11298617-A-T | *** | ||||||||
13455781-TTCAAG-T | 11300105-TTCAAG-T | *** | ||||||||
13694460-TGGAAA-T | 11538784-TGGAAA-T | DYZ17 | *** | |||||||
13703618-T-A | 11547942-T-A | DYZ17 | *** | |||||||
13716254-A-T | 11560578-A-T | DYZ17 | *** | |||||||
13716690-AGGAATGGAATGGAATGGAAT-A | 11561014-AGGAATGGAATGGAATGGAAT-A | DYZ17 | 8×GGAAT | *** | ||||||
15815336-C-CA | 13703456-C-CA | 57×A | *** | |||||||
15866311-AG-A | 13754431-AG-A | *** | ||||||||
16904664-C-CAAAA | 14792784-C-CAAAA | 40×A | *** | |||||||
20645840-TTTC-T | 18483954-TTTC-T | P4_Prx | *** | |||||||
22348389-TC-T | 20186503-TC-T | DYZ19 | *** | |||||||
22490612-A-T | 20328726-A-T | DYZ19 | *** | |||||||
24305272-CAA-C | 22159125-CAA-C | P3_t1 | 21×A | *** | ||||||
26902332-C-A | 24756185-C-A | P1_r3 | *** | |||||||
28784730-A-C | 26638583-A-C | *** | ||||||||
28800091-GGAATT-G | 26653944-GGAATT-G | *** | ||||||||
10024548-G-GTC | 10186939-G-GTC | *** | ||||||||
13699019-AT-A | 11543343-AT-A | DYZ17 | *** | |||||||
8468065-CAAAAAAAA-C | 8600024-CAAAAAAAA-C | 24×A | *** | |||||||
13804419-G-A | 11683713-G-A | FT451743 | DYZ17 | *** | ||||||
13867985-CTAATG-C,CGAATG | 11747279-CTAATG-C,CGAATG | DYZ17 | *** | |||||||
4223236-C-A | 4355195-C-A | *** | ||||||||
19111460-C-A | 16999580-C-A | *** | ||||||||
10800550-T-C | *** | |||||||||
19318178-CTTTT-C | 17206298-CTTTT-C | 28×T | *** | |||||||
10793229-C-A | *** | |||||||||
15477287-G-T | 13365407-G-T | *** | ||||||||
10807265-T-A,G | *** | |||||||||
18981140-C-A | 16869260-C-A | *** | ||||||||
10800541-T-A | *** | |||||||||
10993039-CA-C | *** | |||||||||
18635331-C-T | 16523451-C-T | *** | ||||||||
5242386-C-A | 5374345-C-A | *** | ||||||||
14747945-A-T | 12636014-A-T | *** | ||||||||
6663251-C-A | 6795210-C-A | *** | ||||||||
16730025-T-C | 14618145-T-C | *** | ||||||||
8431223-A-G | 8563182-A-G | *** | ||||||||
5214151-C-A | 5346110-C-A | *** | ||||||||
10800547-T-C | *** | |||||||||
10800554-C-T | *** | |||||||||
21912045-C-A | 19750159-C-A | *** | ||||||||
15690096-C-A | 13578216-C-A | *** | ||||||||
14627361-C-A | 12515429-C-A | FT29840 | *** | |||||||
27216649-C-T | 25070502-C-T | P1_g3 | *** | |||||||
18635328-A-G | 16523448-A-G | *** | ||||||||
7379610-CTT-C | 7511569-CTT-C | 11×T | *** | |||||||
2728183-A-G | 2860142-A-G | *** | ||||||||
3736607-A-G | 3868566-A-G | *** | ||||||||
4470170-C-A | 4602129-C-A | *** | ||||||||
5644715-T-A | 5776674-T-A | *** | ||||||||
6694056-C-T | 6826015-C-T | *** | ||||||||
6698832-GTTT-G | 6830791-GTTT-G | 12×T | *** | |||||||
7705674-G-T | 7837633-G-T | *** | ||||||||
8255803-C-A | 8387762-C-A | *** | ||||||||
8710164-C-A | 8842123-C-A | *** | ||||||||
10941732-C-A | *** | |||||||||
10971854-C-A | FT92141 | *** | ||||||||
14222675-C-A | 12101969-C-A | *** | ||||||||
15862547-G-T | 13750667-G-T | *** | ||||||||
15974595-A-G | 13862715-A-G | *** | ||||||||
16427533-A-T | 14315653-A-T | *** | ||||||||
17022038-C-A | 14910158-C-A | *** | ||||||||
17141688-T-G | 15029808-T-G | *** | ||||||||
17923186-A-G | 15811306-A-G | *** | ||||||||
18853944-G-T | 16742064-G-T | *** | ||||||||
19060850-T-A | 16948970-T-A | *** | ||||||||
21139925-C-A | 18978039-C-A | *** | ||||||||
21639070-G-T | 19477184-G-T | *** | ||||||||
21934687-A-G | 19772801-A-G | *** | ||||||||
22675628-T-C | 20513742-T-C | *** | ||||||||
23395626-T-C | 21233740-T-C | *** | ||||||||
18635340-A-T | 16523460-A-T | *** | ||||||||
6586786-CTTTTT-C | 6718745-CTTTTT-C | 22×T | *** | |||||||
4524333-A-C | 4656292-A-C | *** | ||||||||
7630241-A-T | 7762200-A-T | *** | ||||||||
13466645-G-T | 11310969-G-T | *** | ||||||||
15297128-G-A | 13185227-G-A | *** | ||||||||
16709254-T-C | 14597374-T-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.