Martinez

BigY3: B928349
MDKA Birth: Mexico

Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > K > M526[K2] > P295[P] > M242[Q] > L472 > L56 > L53 > L54 > Z780

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B928349
3127885-C-T A+
6296766-G-A 6428725-G-A IR3_Dst A*
19578983-G-C 17467103-G-C BZ2165 P5_Prx YA*
19786985-C-G 17675105-C-G P5_Prx A*
24352776-G-A 22206629-G-A BZ4301 P3_t1 A*
6109949-A-T 6241908-A-T BY41593 A*
6279260-C-T 6411219-C-T IR3_Dst A*
20021496-T-TTATA 17909616-T-TTATA P5_Prx 15×TAA*
22314035-C-A 20152149-C-A DYZ19 A*
4746512-C-A 4878471-C-A A*
18276357-G-A 16164477-G-A P6_Prx A*
28817231-G-T 26671084-G-T A*
26328393-T-C 24182246-T-C P1_Y1 A*
6373222-C-T IR3_Dst A*
6424274-T-C IR3_Dst A*
6511397-C-G A*
11531370-T-G A*
17526538-C-T P5_Prx A*
17569642-A-C P5_Prx A*
17767651-C-T P5_Prx A*
17775973-C-T P5_Prx A*
17892593-C-A P5_Prx A*
17901259-T-A P5_Prx A*
18563529-C-G P4_Prx A*
18609478-A-G P4_Prx A*
18623623-T-C P4_Prx A*
20128875-T-A DYZ19 A*
20129110-C-T DYZ19 A*
20129181-C-G DYZ19 A*
22101006-C-T P3_b1 A*
23378764-T-C P1_gr1 A*
23430014-G-T P1_gr1 A*
23439429-C-T P1_gr1 A*
23883830-T-C P1_Y1 A*
23930419-G-A P1_Y1 A*
26400705-A-AT 24254558-A-AT P1_Y1 15×TA*
24259988-G-A P1_Y1 A*
26670448-A-T A*
26670923-T-A A*
26671302-G-A A*
26671424-C-G A*
8622146-T-A 8754105-T-A M974 YY+
9385266-C-G 9547657-C-G FGC12195 Y2805 Y+
9895989-TACA-T 10058380-TACA-T +
22977542-ACAT-A 20815656-ACAT-A +
10802255-A-C +
16070618-G-A 13958738-G-A FT329857 Y+
23786473-G-T 21624587-G-T FT332548 +
7391481-T-C 7523440-T-C FGC12205 YP920 YY+
18053454-C-T 15941574-C-T FT181315 YY+
19307124-C-A 17195244-C-A BZ1758 YY+
7783401-C-T 7915360-C-T FT96158 YY+
18856889-G-A 16745009-G-A YY+
23498649-T-C 21336763-T-C FGC12277 YY+
13231623-G-A 11075947-G-A +
21225015-C-T 19063129-C-T FT357868 YY+
17950816-A-G 15838936-A-G YY+
7805128-G-A 7937087-G-A YY+
2880489-CAAAT-C +
2950806-T-C +
3034267-G-C +
3051499-C-T +
3157511-C-G +
3162553-T-C +
3329545-A-C +
3409625-G-A +
3443019-C-T +
3670555-G-A +
3753928-G-T +
3771237-C-T +
3978445-G-C +
4056490-C-T +
4253162-CAAT-C +
4262920-A-G +
4529853-C-T +
4991180-T-C +
5014915-T-C +
5119548-G-T +
5196469-T-C +
5304696-T-C +
5505998-C-T +
5543441-G-A +
5730988-A-G +
5810570-G-A +
5898451-C-T +
6116025-C-T +
6138802-A-G +
6510519-A-G +
6516087-G-A +
6736588-A-G +
6986637-GGCCGCCA-G +
6998264-A-G +
7294122-A-G +
7321107-C-T +
7339435-G-T +
7693033-A-G +
7799348-T-C +
7868855-A-G +
7914727-C-T +
8015880-C-T +
8026201-C-A +
7982083-T-TA 8114042-T-TA +
8126916-T-C +
8133971-G-T +
8155891-A-C +
8276968-G-A +
8317455-C-G +
8377693-T-G +
8553922-G-A +
8690806-G-C +
8772428-G-A +
8973362-A-G +
9125533-G-C +
9137913-C-T +
9320540-CA-C +
9537602-C-A +
9934803-T-C +
9951409-A-C +
9794298-T-TG 9956689-T-TG +
10226736-C-G +
10658691-C-G +
10758518-C-T +
10812626-G-A +
10878904-C-G +
10900247-C-T +
11006365-A-G +
11038656-C-A +
11042766-C-A +
11074535-C-G +
11493663-G-A +
11533777-G-A +
11550782-G-C +
11650996-T-A +
11888987-A-T +
11953062-C-A +
11962737-C-T +
12249882-T-G +
12306617-G-T +
12732557-T-C +
12872676-T-A +
12874805-C-T +
13060461-G-A +
13065706-T-C +
13175203-T-C +
13374466-T-C +
13584767-G-A +
13611882-C-T +
13753526-C-T +
13860401-T-C +
14198236-A-G +
14234419-G-A +
14313064-G-A +
14385464-T-C +
14531354-T-A +
14543472-A-G +
14705338-A-G +
14741090-T-A +
14869576-A-G +
14872514-G-C +
15091264-G-T +
15278726-T-G +
15333033-A-T +
15381838-A-G +
15384205-T-C +
15465723-G-A +
15479270-C-G +
15508723-G-A +
15514155-A-G +
15685515-G-A +
15697786-C-T +
15892839-G-A P7_Gap +
15894051-G-A P7_Gap +
16037362-G-T +
16039141-T-C +
16532311-G-A +
16592839-A-G +
16822356-C-T +
16832826-G-C +
16834063-T-A +
16869154-G-A +
16880437-G-A +
16949888-A-T +
16964824-A-T +
17038147-G-A +
17046940-G-A +
17115348-C-T +
17337907-T-C +
19017349-A-G +
19020089-G-C +
19099784-G-A +
19147336-C-A +
19149796-C-G +
19333416-A-G +
19345108-C-T +
19370673-C-T +
19503928-C-A +
19730365-T-G +
19841787-C-T +
19878833-A-G +
20066692-C-A DYZ19 +
20303531-G-A DYZ19 +
20632340-G-T +
20936754-C-G +
20957167-T-C +
21212868-C-A +
21377305-A-G +
21393811-A-G +
21708323-G-A +
21710000-T-C +
22210163-A-G +
26489780-A-G +
26667383-G-A +
19411921-A-AGAAG 17300041-A-AGAAG *
6605511-T-TTA 6737470-T-TTA 14×TA*
22633871-A-AAATAATAAT 20471985-A-AAATAATAAT 13×AAT*
16774225-T-TTATC 14662345-T-TTATC 5×TATC*
18149590-GATACATAC-G 16037710-GATACATAC-G 10×ATAC*
3543955-TTGTGTGTGTG-T 23×TG*
3842029-C-T *
7554786-A-AAC 7686745-A-AAC 22×AC*
10893911-C-T *
13859362-TT-C,TC *
20178440-G-C DYZ19 *
25862090-GAGAAAGAAAGAAAGAAAGAAAGAA-G P1_Y2 14×AGAA*
8619001-AACAC-A 8750960-AACAC-A br1 14×AC**
58974900-C-A 56828753-C-A **
10921251-TATTCC-T **
7717648-T-C 7849607-T-C **
22256559-T-A 20094673-T-A BY164473 DYZ19 **
56828728-C-T **
13455989-C-T 11300313-C-T BY85452 **
56828759-C-T **
56828716-T-C **
56828719-G-C **
56828722-T-G **
56828740-A-G **
4062522-GTATATATATATATATATATATATA-G 21×TA**
5053563-G-A **
6141586-C-T **
10176395-T-G **
10898233-C-T **
10942616-C-T **
11162911-G-A **
11171668-T-G **
11477957-G-T **
11865126-A-C **
12326046-C-T **
12627872-GTTT-G 13×T**
14611555-GTTTATTTA-G 9×TTTA**
15532164-T-C **
16969603-G-A **
17217828-C-G **
19286903-CT-C **
20094685-C-A DYZ19 **
20295640-A-G DYZ19 **
20305549-C-T DYZ19 **
20309805-C-A DYZ19 **
20318173-C-A DYZ19 **
21393801-C-A **
21393803-T-C **
22242221-A-G **
23807967-T-C P1_Y1 **
26454568-AATG-A **
17192868-G-GT 15080988-G-GT ***
8883602-A-AAC 9015561-A-AAC 8×AC***
23756356-C-CTG 21594470-C-CTG 11×TG***
22253657-T-A 20091771-T-A DYZ19 ***
22253661-G-T 20091775-G-T DYZ19 ***
7164467-CAAAA-C 7296426-CAAAA-C 24×A***
13453885-T-G 11298209-T-G ***
16990245-AAAG-A 14878365-AAAG-A ***
17996127-TACACAC-T 15884247-TACACAC-T P7_Gap 20×AC***
7282159-CTTTT-C 7414118-CTTTT-C 22×T***
19510264-C-CT 17398384-C-CT 27×T***
9852973-GGAAGGAAG-G,GGAAGGAAA 10015364-GGAAGGAAG-G,GGAAGGAAA ***
13459273-T-A 11303597-T-A ***
4401366-A-G 4533325-A-G ***
14062010-CAAAAAAAAAAAAA-C 11941304-CAAAAAAAAAAAAA-C 34×A***
5308777-ACT-A 5440736-ACT-A ***
13566948-C-A 11411272-C-A 12×AT***
19073867-TATAC-T,TATAT 16961987-TATAC-T,TATAT ***
2820575-ATATATATTTTTT-A,ATTT ***
7238970-CTATATATATATATA-C,CTA 20×TA***
8598194-AAAT-A ***
8598201-A-T ***
12631243-A-G ***
13868855-A-G ***
15923785-CTTTTTTT-C,CTTTTTT 30×T***
19166919-CAAAAAAAAA-C,CA 30×A***
20068329-C-T DYZ19 ***
20137933-C-T DYZ19 ***
20157364-G-T DYZ19 ***
20260372-C-T DYZ19 ***
24354302-AAAACACAC-A P1_Y1 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.