Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Names	Region	McDonald BED	combBED	STR	Kane-BY3 B336664
13458637-G-GTTCCA	11302961-G-GTTCCA					9×TTCCA	+
5468173-C-CTT	5600132-C-CTT					26×T	+
5962109-C-CATAT	6094068-C-CATAT					20×AT	+
13531498-G-GA	11375822-G-GA					10×A	+
	10754948-A-G						+
13857024-A-G	11736318-A-G	FTB50971					+
5700516-G-T	5832475-G-T	FTB50934					+
7717666-CTCTT-C	7849625-CTCTT-C					5×TCTT	+
	10647167-T-TCATTC						+
6827027-T-C	6958986-T-C			Y			+
	10969986-T-TTCACTCCACTCCAC						+
26060168-C-CAAAAA	23914021-C-CAAAAA		P1_Y1			39×A	+
24422478-C-CAAAAA	22276331-C-CAAAAA					43×A	+
	56868570-G-A						+
	10908517-G-GTGACACATCTCTGAACTGATCAACCAATTGA						+
	10649041-TATTCC-T						+
19844512-T-G	17732632-T-G		P5_Prx				+
6225989-C-CTTCTTTCTTTCT	6357948-C-CTTCTTTCTTTCT		IR3_Dst			13×TTCT	+
3110007-C-G	3241966-C-G						+
3838675-G-GCGACCT	3970634-G-GCGACCT						+
4450392-C-T	4582351-C-T						+
4501977-A-G	4633936-A-G						+
5680675-T-A	5812634-T-A						+
6464892-A-G	6596851-A-G						+
6827020-T-C	6958979-T-C			Y			+
6953093-G-T	7085052-G-T			Y	Y		+
9914769-A-T	10077160-A-T			Y			+
15595434-C-T	13483554-C-T			Y			+
15865946-C-CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13754066-C-CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT					37×T	+
16034399-C-T	13922519-C-T			Y			+
16621031-C-G	14509151-C-G			Y			+
18383972-T-G	16272092-T-G		P6_Gap				+
21719381-A-G	19557495-A-G			Y	Y		+
21831317-A-C	19669431-A-C			Y			+
21833027-G-T	19671141-G-T			Y			+
22802868-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	20640982-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT					32×T	+
26100509-G-GTTTT	23954362-G-GTTTT		P1_Y1			35×T	+
26024548-CTTT-C	23878401-CTTT-C		P1_Y1			17×T	*
58979252-C-A	56833105-C-A						*
27641766-C-CT	25495619-C-CT		P1_Y2			14×T	*
13463406-C-T	11307730-C-T						*
58985853-C-A	56839706-C-A						*
25511351-AT-A	23365204-AT-A		P1_gr1			14×T	*
2965271-A-G	3097230-A-G						*
14031139-TGGA-T	11910433-TGGA-T					6×GGA	*
5666004-T-C	5797963-T-C						*
13471845-G-GT	11316169-G-GT						*
3535987-C-CAT	3667946-C-CAT						*
3547140-T-A	3679099-T-A					8×A	*
3920475-T-C	4052434-T-C						*
3924392-C-T	4056351-C-T						*
3924394-C-A	4056353-C-A						*
3989883-T-A	4121842-T-A						*
4029778-T-G	4161737-T-G	FGC82297					*
4030172-G-C	4162131-G-C						*
4030299-G-A	4162258-G-A						*
4035411-T-A	4167370-T-A						*
4765721-AT-A	4897680-AT-A					10×T	*
5554957-G-A	5686916-G-A						*
5832455-T-TTATA	5964414-T-TTATA						*
6445370-A-C	6577329-A-C						*
13450798-CTTCA-C	11295122-CTTCA-C						*
24413246-TTTG-T	22267099-TTTG-T					8×TTG	*
3918060-G-T	4050019-G-T						*
4024633-C-T	4156592-C-T						*
4026239-AG-A	4158198-AG-A						*
5502369-G-T	5634328-G-T						*
8513634-TTG-T	8645593-TTG-T						*
17632613-AGT-A	15520733-AGT-A						*
4035854-G-GAT	4167813-G-GAT						*
17459485-CAAAAA-C	15347605-CAAAAA-C					25×A	*
13535681-A-ATG	11380005-A-ATG					9×TG	*
8751098-G-A	8883057-G-A			Y	Y		*
21904710-C-CA	19742824-C-CA					11×A	*
21718078-G-GA	19556192-G-GA					10×A	*
59013608-GTATA-G	56867461-GTATA-G					15×TA	*
14886399-CAAA-C	12774465-CAAA-C					21×A	*
27971726-C-CAAAAA	25825579-C-CAAAAA		P1_Y2			27×A	*
13463414-C-T	11307738-C-T						*
17274955-TAGATAGAC-T	15163075-TAGATAGAC-T						*
10017070-TCACA-T	10179461-TCACA-T					16×CA	*
3349229-C-CAA	3481188-C-CAA					22×A	*
13354858-TAA-T	11199182-TAA-T					14×A	*
21569958-T-A	19408072-T-A	FTB44170		Y	Y	46×A	*
23298777-C-CT	21136891-C-CT					10×T	*
16340147-G-GA,GAA	14228267-G-GA,GAA					22×A	*
	56837419-G-T						*
18382641-C-CA	16270761-C-CA		P6_Gap			10×A	*
16860749-CAA-C	14748869-CAA-C					24×A	*
17209887-C-CT	15098007-C-CT					10×T	*
17680077-CTTT-C	15568197-CTTT-C					17×T	*
13545823-T-TA	11390147-T-TA					12×A	*
6074774-TTA-T	6206733-TTA-T						*
14025988-GAGAAAGAA-G,GAGAA	11905282-GAGAAAGAA-G,GAGAA					13×AGAA	*
8650022-G-GAGAA,GAGAAAGAA	8781981-G-GAGAA,GAGAAAGAA					19×AGAA	*
	56830680-CATTCCACTCT-C						*
	10780974-C-T						*
	10780975-T-G						*
	10780985-T-C						*
	10780988-C-G						*
15557124-AATATATAT-A,AAT	13445244-AATATATAT-A,AAT					19×AT	*
19412618-AAAAT-A	17300738-AAAAT-A					8×AAAT	*
14200742-TTAGATAGATAGA-T,TTAGA	12080036-TTAGATAGATAGA-T,TTAGA					15×TAGA	*
23416511-CTT-C,CT	21254625-CTT-C,CT					16×T	*
18965642-CTTTTT-C	16853762-CTTTTT-C					19×T	*
6767774-CA-C	6899733-CA-C					8×A	*
22128509-CTTA-C	19966623-CTTA-C					5×TTA	*
	10958553-CTCCAT-C						*
27964790-A-AT	25818643-A-AT		P1_Y2			10×T	*
7886330-TG-T	8018289-TG-T						*
	10985483-T-C	FT439248					*
17802166-TAAAAAA-T	15690286-TAAAAAA-T					30×A	*
	10985475-C-A						*
14009385-C-G	11888679-C-G			Y	Y		*
5923503-G-GT	6055462-G-GT					9×T	*
5255069-ATT-A	5387028-ATT-A					15×T	*
27937836-GAAA-G	25791689-GAAA-G		P1_Y2			17×A	*
9942043-ATTTTT-A	10104434-ATTTTT-A					28×T	*
3917650-C-A	4049609-C-A						*
3917689-A-G	4049648-A-G	F8850					*
4026241-A-T	4158200-A-T						*
6486831-T-C	6618790-T-C	FGC69285					*
6213774-ATATTAT-A	6345733-ATATTAT-A		IR3_Dst			9×TAT	*
58980525-T-G	56834378-T-G						*
	11022414-TCTCCA-T						*
7128621-CGTGT-C,CGT	7260580-CGTGT-C,CGT					23×GT	*
	13203566-C-CAAA					19×A	*
	10955066-C-A						*
28644854-CA-C	26498707-CA-C					10×A	*
8498109-TTGTG-T	8630068-TTGTG-T					12×TG	*
	10954322-A-T						*
23505158-CA-C,CAA	21343272-CA-C,CAA					20×A	*
9524289-C-CTA	9686680-C-CTA					8×TA	*
19125433-C-T	17013553-C-T			Y	Y		*
4035474-T-TACA	4167433-T-TACA						*
21438785-T-TAA	19276899-T-TAA					31×A	*
17274951-TAGATAGATAGAC-T	15163071-TAGATAGATAGAC-T						*
22255821-G-A	20093935-G-A		DYZ19				*
	10955075-G-C						*
13272139-T-A	11116463-T-A						*
4545124-GACAC-G	4677083-GACAC-G					12×AC	*
6020688-GTTT-G	6152647-GTTT-G					23×T	*
13414797-ATTT-A	11259121-ATTT-A					20×T	*
8751100-A-G	8883059-A-G			Y	Y		*
21717473-TA-T	19555587-TA-T					10×A	*
14495831-GGTGT-G,GGT	12384028-GGTGT-G,GGT					17×GT	*
3922183-GAAA-G	4054142-GAAA-G					16×A	*
8030066-T-A	8162025-T-A			Y	Y		*
13204261-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT	11048585-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT						*
13449945-C-CA	11294269-C-CA						*
	56825934-T-TAATTCCATTCGATTGCATTCCATTCGATTGCATTCCATTCGATTGCATTCCATTCGATTG						*
	56825856-A-T						*
	56871627-A-AT						*
13463404-A-T	11307728-A-T						*
13463419-G-C	11307743-G-C						*
13463424-C-T	11307748-C-T						*
13463425-T-G	11307749-T-G						*
	10985421-TTCCACTCCACTCAAA-T						*
	10985444-CA-C						*
	10985446-CTCCCCTCAACTCCA-C						*
	10985466-C-A						*
13449946-C-CTCCA	11294270-C-CTCCA						*
13448018-C-CTCCACTCCATTCCAATACATTCGATTCCATTCCACTCCATTCCACTCCTATTCACTCTACTGCGT	11292342-C-CTCCACTCCATTCCAATACATTCGATTCCATTCCACTCCATTCCACTCCTATTCACTCTACTGCGT						*
	10632736-TCATTCCATCCATATCATTCCATTCCCCTCAACTG-T						*
	56832357-C-CCACTCCTTTCCACTCCACTTCCCTCCAA						*
28529232-CAAAAA-C,CAAAA	26383085-CAAAAA-C,CAAAA					23×A	*
23832826-T-TCCCCC	21670940-T-TCCCCC						*
2827953-G-C	2959912-G-C			Y	Y		*
15752638-C-CCTT,CCTTCTT	13640758-C-CCTT,CCTTCTT					25×CTT	*
26024566-C-A	23878419-C-A		P1_Y1				*
8634381-T-TAC,TACAC	8766340-T-TAC,TACAC					22×AC	*
23763999-CT-C	21602113-CT-C					9×T	*
15779536-AT-A	13667656-AT-A					9×T	*
4270959-AAGATAGAT-A,AAGAT	4402918-AAGATAGAT-A,AAGAT					15×AGAT	*
13478389-C-T	11322713-C-T						*
	10632778-CTCCTGTCCTCTTCTCTCCACTCCATTCCATTCCACTCCATATCCATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCCATTTTATTCCAT-C						*
9921964-A-T	10084355-A-T			Y			*
9921969-G-C	10084360-G-C			Y			*
8666723-GT-G,GTT	8798682-GT-G,GTT					25×T	*
16074766-C-CTTTTT	13962886-C-CTTTTT					39×T	*
3550598-A-AAAAAAC	3682557-A-AAAAAAC						*
5770338-CTTT-C,CTTTTTTT	5902297-CTTT-C,CTTTTTTT					25×T	*
5815594-C-CAAA	5947553-C-CAAA					22×A	*
5858471-G-A	5990430-G-A						*
6001028-C-A	6132987-C-A						*
8030059-ACTAC-A	8162018-ACTAC-A						*
9534027-C-A	9696418-C-A		IR3_Prx				*
9839568-A-AACCC	10001959-A-AACCC						*
	10658466-T-A						*
	10689039-A-ACTCAC						*
	10689056-T-A						*
	10780991-T-A						*
	10820812-T-G						*
	10955060-C-A						*
	10955068-T-C						*
13451693-C-CCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCTCTTTATTCCATTCTATTCCTTTTTTT	11296017-C-CCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCTCTTTATTCCATTCTATTCCTTTTTTT						*
15163300-A-ATTT	13051386-A-ATTT					15×T	*
15468678-CAAA-C,CAAAA	13356798-CAAA-C,CAAAA					23×A	*
15810962-G-GGT,GGTGT	13699082-G-GGT,GGTGT					19×GT	*
16809086-CAGATAGAT-C,CAGAT	14697206-CAGATAGAT-C,CAGAT					11×AGAT	*
17048866-A-T	14936986-A-T			Y	Y		*
17798286-A-AATTGAAAAAAAAAAAAACCCC	15686406-A-AATTGAAAAAAAAAAAAACCCC						*
19125421-C-T	17013541-C-T			Y	Y		*
19125424-G-T	17013544-G-T			Y	Y		*
19129068-TTC-T	17017188-TTC-T						*
19130738-C-CTTTTTT	17018858-C-CTTTTTT					33×T	*
19382327-CTATTAT-C,CTAT	17270447-CTATTAT-C,CTAT					11×TAT	*
20501040-C-G	18339154-C-G		P5_Dst				*
22936009-C-A	20774123-C-A			Y	Y		*
23041198-G-GAAAAAA	20879312-G-GAAAAAA					34×A	*
	56842783-C-T						*
	56847837-C-T						*

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Henderson

Tree Position

Unique Mutations