Tree Position

R-P312/S116 > Z40481 > ZZ11 > U152/S28 > L2/S139 > Z41150 > Z49 > Z142/S211 > Z150 > CTS9490 > S7404 > A8452 > BY42705

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-BY3
B336664
13458637-G-GTTCCA 11302961-G-GTTCCA 9×TTCCA+
5468173-C-CTT 5600132-C-CTT 26×T+
5962109-C-CATAT 6094068-C-CATAT 20×AT+
13531498-G-GA 11375822-G-GA 10×A+
10754948-A-G +
13857024-A-G 11736318-A-G FTB50971 DYZ17 +
5700516-G-T 5832475-G-T FTB50934 +
7717666-CTCTT-C 7849625-CTCTT-C 5×TCTT+
10647167-T-TCATTC +
6827027-T-C 6958986-T-C Y+
10969986-T-TTCACTCCACTCCAC +
26060168-C-CAAAAA 23914021-C-CAAAAA P1_Y1 39×A+
24422478-C-CAAAAA 22276331-C-CAAAAA 43×A+
56868570-G-A +
10908517-G-GTGACACATCTCTGAACTGATCAACCAATTGA +
10649041-TATTCC-T +
19844512-T-G 17732632-T-G P5_Prx +
6225989-C-CTTCTTTCTTTCT 6357948-C-CTTCTTTCTTTCT IR3_Dst 13×TTCT+
3110007-C-G 3241966-C-G +
3838675-G-GCGACCT 3970634-G-GCGACCT +
4450392-C-T 4582351-C-T +
4501977-A-G 4633936-A-G +
5680675-T-A 5812634-T-A +
6464892-A-G 6596851-A-G +
6827020-T-C 6958979-T-C Y+
6953093-G-T 7085052-G-T YY+
9914769-A-T 10077160-A-T Y+
15595434-C-T 13483554-C-T Y+
15865946-C-CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13754066-C-CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 37×T+
16034399-C-T 13922519-C-T Y+
16621031-C-G 14509151-C-G Y+
18383972-T-G 16272092-T-G P6_Gap +
21719381-A-G 19557495-A-G YY+
21831317-A-C 19669431-A-C Y+
21833027-G-T 19671141-G-T Y+
22802868-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20640982-A-ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32×T+
26100509-G-GTTTT 23954362-G-GTTTT P1_Y1 35×T+
26024548-CTTT-C 23878401-CTTT-C P1_Y1 17×T*
58979252-C-A 56833105-C-A *
27641766-C-CT 25495619-C-CT P1_Y2 14×T*
13463406-C-T 11307730-C-T *
58985853-C-A 56839706-C-A *
25511351-AT-A 23365204-AT-A P1_gr1 14×T*
2965271-A-G 3097230-A-G *
14031139-TGGA-T 11910433-TGGA-T 6×GGA*
5666004-T-C 5797963-T-C *
13471845-G-GT 11316169-G-GT *
3535987-C-CAT 3667946-C-CAT *
3547140-T-A 3679099-T-A 8×A*
3920475-T-C 4052434-T-C *
3924392-C-T 4056351-C-T *
3924394-C-A 4056353-C-A *
3989883-T-A 4121842-T-A *
4029778-T-G 4161737-T-G FGC82297 *
4030172-G-C 4162131-G-C *
4030299-G-A 4162258-G-A *
4035411-T-A 4167370-T-A *
4765721-AT-A 4897680-AT-A 10×T*
5554957-G-A 5686916-G-A *
5832455-T-TTATA 5964414-T-TTATA *
6445370-A-C 6577329-A-C *
13450798-CTTCA-C 11295122-CTTCA-C *
24413246-TTTG-T 22267099-TTTG-T 8×TTG*
3918060-G-T 4050019-G-T *
4024633-C-T 4156592-C-T *
4026239-AG-A 4158198-AG-A *
5502369-G-T 5634328-G-T *
8513634-TTG-T 8645593-TTG-T *
17632613-AGT-A 15520733-AGT-A *
4035854-G-GAT 4167813-G-GAT *
17459485-CAAAAA-C 15347605-CAAAAA-C 25×A*
13535681-A-ATG 11380005-A-ATG 9×TG*
8751098-G-A 8883057-G-A YY*
21904710-C-CA 19742824-C-CA 11×A*
21718078-G-GA 19556192-G-GA 10×A*
59013608-GTATA-G 56867461-GTATA-G 15×TA*
14886399-CAAA-C 12774465-CAAA-C 21×A*
27971726-C-CAAAAA 25825579-C-CAAAAA P1_Y2 27×A*
13463414-C-T 11307738-C-T *
17274955-TAGATAGAC-T 15163075-TAGATAGAC-T *
10017070-TCACA-T 10179461-TCACA-T 16×CA*
3349229-C-CAA 3481188-C-CAA 22×A*
13354858-TAA-T 11199182-TAA-T 14×A*
21569958-T-A 19408072-T-A FTB44170 YY46×A*
23298777-C-CT 21136891-C-CT 10×T*
16340147-G-GA,GAA 14228267-G-GA,GAA 22×A*
56837419-G-T *
18382641-C-CA 16270761-C-CA P6_Gap 10×A*
16860749-CAA-C 14748869-CAA-C 24×A*
17209887-C-CT 15098007-C-CT 10×T*
17680077-CTTT-C 15568197-CTTT-C 17×T*
13545823-T-TA 11390147-T-TA 12×A*
6074774-TTA-T 6206733-TTA-T *
14025988-GAGAAAGAA-G,GAGAA 11905282-GAGAAAGAA-G,GAGAA 13×AGAA*
8650022-G-GAGAA,GAGAAAGAA 8781981-G-GAGAA,GAGAAAGAA 19×AGAA*
56830680-CATTCCACTCT-C *
10780974-C-T *
10780975-T-G *
10780985-T-C *
10780988-C-G *
15557124-AATATATAT-A,AAT 13445244-AATATATAT-A,AAT 19×AT*
19412618-AAAAT-A 17300738-AAAAT-A 8×AAAT*
14200742-TTAGATAGATAGA-T,TTAGA 12080036-TTAGATAGATAGA-T,TTAGA 15×TAGA*
23416511-CTT-C,CT 21254625-CTT-C,CT 16×T*
18965642-CTTTTT-C 16853762-CTTTTT-C 19×T*
6767774-CA-C 6899733-CA-C 8×A*
22128509-CTTA-C 19966623-CTTA-C 5×TTA*
10958553-CTCCAT-C *
27964790-A-AT 25818643-A-AT P1_Y2 10×T*
7886330-TG-T 8018289-TG-T *
10985483-T-C FT439248 *
17802166-TAAAAAA-T 15690286-TAAAAAA-T 30×A*
10985475-C-A *
14009385-C-G 11888679-C-G YY*
5923503-G-GT 6055462-G-GT 9×T*
5255069-ATT-A 5387028-ATT-A 15×T*
27937836-GAAA-G 25791689-GAAA-G P1_Y2 17×A*
9942043-ATTTTT-A 10104434-ATTTTT-A 28×T*
3917650-C-A 4049609-C-A *
3917689-A-G 4049648-A-G F8850 *
4026241-A-T 4158200-A-T *
6486831-T-C 6618790-T-C FGC69285 *
6213774-ATATTAT-A 6345733-ATATTAT-A IR3_Dst 9×TAT*
58980525-T-G 56834378-T-G *
11022414-TCTCCA-T *
7128621-CGTGT-C,CGT 7260580-CGTGT-C,CGT 23×GT*
13203566-C-CAAA 19×A*
10955066-C-A *
28644854-CA-C 26498707-CA-C 10×A*
8498109-TTGTG-T 8630068-TTGTG-T 12×TG*
10954322-A-T *
23505158-CA-C,CAA 21343272-CA-C,CAA 20×A*
9524289-C-CTA 9686680-C-CTA 8×TA*
19125433-C-T 17013553-C-T YY*
4035474-T-TACA 4167433-T-TACA *
21438785-T-TAA 19276899-T-TAA 31×A*
17274951-TAGATAGATAGAC-T 15163071-TAGATAGATAGAC-T *
22255821-G-A 20093935-G-A DYZ19 *
10955075-G-C *
13272139-T-A 11116463-T-A *
4545124-GACAC-G 4677083-GACAC-G 12×AC*
6020688-GTTT-G 6152647-GTTT-G 23×T*
13414797-ATTT-A 11259121-ATTT-A 20×T*
8751100-A-G 8883059-A-G YY*
21717473-TA-T 19555587-TA-T 10×A*
14495831-GGTGT-G,GGT 12384028-GGTGT-G,GGT 17×GT*
3922183-GAAA-G 4054142-GAAA-G 16×A*
8030066-T-A 8162025-T-A YY*
13204261-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT 11048585-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT *
13449945-C-CA 11294269-C-CA *
56825934-T-TAATTCCATTCGATTGCATTCCATTCGATTGCATTCCATTCGATTGCATTCCATTCGATTG *
56825856-A-T *
56871627-A-AT *
13463404-A-T 11307728-A-T *
13463419-G-C 11307743-G-C *
13463424-C-T 11307748-C-T *
13463425-T-G 11307749-T-G *
10985421-TTCCACTCCACTCAAA-T *
10985444-CA-C *
10985446-CTCCCCTCAACTCCA-C *
10985466-C-A *
13449946-C-CTCCA 11294270-C-CTCCA *
13448018-C-CTCCACTCCATTCCAATACATTCGATTCCATTCCACTCCATTCCACTCCTATTCACTCTACTGCGT 11292342-C-CTCCACTCCATTCCAATACATTCGATTCCATTCCACTCCATTCCACTCCTATTCACTCTACTGCGT *
10632736-TCATTCCATCCATATCATTCCATTCCCCTCAACTG-T *
56832357-C-CCACTCCTTTCCACTCCACTTCCCTCCAA *
28529232-CAAAAA-C,CAAAA 26383085-CAAAAA-C,CAAAA 23×A*
23832826-T-TCCCCC 21670940-T-TCCCCC *
2827953-G-C 2959912-G-C YY*
15752638-C-CCTT,CCTTCTT 13640758-C-CCTT,CCTTCTT 25×CTT*
26024566-C-A 23878419-C-A P1_Y1 *
8634381-T-TAC,TACAC 8766340-T-TAC,TACAC 22×AC*
23763999-CT-C 21602113-CT-C 9×T*
15779536-AT-A 13667656-AT-A 9×T*
4270959-AAGATAGAT-A,AAGAT 4402918-AAGATAGAT-A,AAGAT 15×AGAT*
13478389-C-T 11322713-C-T *
10632778-CTCCTGTCCTCTTCTCTCCACTCCATTCCATTCCACTCCATATCCATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCCATTTTATTCCAT-C *
9921964-A-T 10084355-A-T Y*
9921969-G-C 10084360-G-C Y*
8666723-GT-G,GTT 8798682-GT-G,GTT 25×T*
16074766-C-CTTTTT 13962886-C-CTTTTT 39×T*
3550598-A-AAAAAAC 3682557-A-AAAAAAC *
5770338-CTTT-C,CTTTTTTT 5902297-CTTT-C,CTTTTTTT 25×T*
5815594-C-CAAA 5947553-C-CAAA 22×A*
5858471-G-A 5990430-G-A *
6001028-C-A 6132987-C-A *
8030059-ACTAC-A 8162018-ACTAC-A *
9534027-C-A 9696418-C-A IR3_Prx *
9839568-A-AACCC 10001959-A-AACCC *
10658466-T-A *
10689039-A-ACTCAC *
10689056-T-A *
10780991-T-A *
10820812-T-G *
10955060-C-A *
10955068-T-C *
13451693-C-CCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCTCTTTATTCCATTCTATTCCTTTTTTT 11296017-C-CCCTTCCATTCCATTCCATTCCCTTCCATTCCATTCCTCTTTATTCCATTCTATTCCTTTTTTT *
15163300-A-ATTT 13051386-A-ATTT 15×T*
15468678-CAAA-C,CAAAA 13356798-CAAA-C,CAAAA 23×A*
15810962-G-GGT,GGTGT 13699082-G-GGT,GGTGT 19×GT*
16809086-CAGATAGAT-C,CAGAT 14697206-CAGATAGAT-C,CAGAT 11×AGAT*
17048866-A-T 14936986-A-T YY*
17798286-A-AATTGAAAAAAAAAAAAACCCC 15686406-A-AATTGAAAAAAAAAAAAACCCC *
19125421-C-T 17013541-C-T YY*
19125424-G-T 17013544-G-T YY*
19129068-TTC-T 17017188-TTC-T *
19130738-C-CTTTTTT 17018858-C-CTTTTTT 33×T*
19382327-CTATTAT-C,CTAT 17270447-CTATTAT-C,CTAT 11×TAT*
20501040-C-G 18339154-C-G P5_Dst *
22936009-C-A 20774123-C-A YY*
23041198-G-GAAAAAA 20879312-G-GAAAAAA 34×A*
56842783-C-T *
56847837-C-T *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.