Pathak

BigY3: IN86374
MDKA Birth: India > UK 1600

Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M130[C] > K29

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
IN86374
hg19:Y:3623746-A-G hg38:Y:3755705-A-G A+
hg19:Y:18379337-T-C hg38:Y:16267457-T-C P6_Prx A+
hg19:Y:18522287-G-C hg38:Y:16410407-G-C P6_Dst A+
hg19:Y:19594685-C-T hg38:Y:17482805-C-T P5_Prx YA+
hg19:Y:19659642-A-G hg38:Y:17547762-A-G P5_Prx A+
hg19:Y:19748445-T-C hg38:Y:17636565-T-C P5_Prx A+
hg19:Y:19864570-T-C hg38:Y:17752690-T-C P5_Prx A+
hg19:Y:19905258-A-G hg38:Y:17793378-A-G P5_Prx A+
hg19:Y:19942561-C-G hg38:Y:17830681-C-G P5_Prx A+
hg19:Y:20237216-G-C hg38:Y:18075330-G-C P5_Dst A+
hg19:Y:20274518-T-C hg38:Y:18112632-T-C P5_Dst A+
hg19:Y:20324999-T-C hg38:Y:18163113-T-C P5_Dst A+
hg19:Y:20409785-C-T hg38:Y:18247899-C-T P5_Dst A+
hg19:Y:20542727-G-A hg38:Y:18380841-G-A P5_Dst A+
hg19:Y:20767451-C-G hg38:Y:18605565-C-G P4_Prx A+
hg19:Y:20782306-C-T hg38:Y:18620420-C-T P4_Prx A+
hg19:Y:20876723-G-C hg38:Y:18714837-G-C P4_Dst A+
hg19:Y:22265549-G-T hg38:Y:20103663-G-T DYZ19 A+
hg19:Y:22313719-G-A hg38:Y:20151833-G-A DYZ19 A+
hg19:Y:23223809-C-G hg38:Y:21061923-C-G YA+
hg19:Y:24287032-A-G hg38:Y:22140885-A-G P3_t1 A+
hg19:Y:25605401-T-A hg38:Y:23459254-T-A P1_gr1 A+
hg19:Y:25929516-T-G hg38:Y:23783369-T-G P1_Y1 A+
hg19:Y:26259883-C-A hg38:Y:24113736-C-A P1_Y1 A+
hg19:Y:26349557-G-A hg38:Y:24203410-G-A P1_Y1 A+
hg19:Y:27567617-A-C hg38:Y:25421470-A-C P1_Y2 A+
hg19:Y:23889309-G-GGT hg38:Y:21727423-G-GGT 14×GTA*
hg19:Y:19996944-A-AT hg38:Y:17885064-A-AT P5_Prx 8×TA*
hg19:Y:24365189-T-A hg38:Y:22219042-T-A A*
hg19:Y:18284153-C-A hg38:Y:16172273-C-A P6_Prx A*
hg19:Y:58992585-G-T hg38:Y:56846438-G-T A*
hg19:Y:14418138-CTGTATATATATATGTATATATA-C hg38:Y:12297437-G-A YYA*
hg19:Y:24280692-G-T hg38:Y:22134545-G-T P3_t1 A*
hg19:Y:26170506-A-G hg38:Y:24024359-A-G P1_Y1 A*
hg19:Y:28817213-G-T hg38:Y:26671066-G-T A*
hg19:Y:28817796-A-G hg38:Y:26671649-A-G A*
hg38:Y:56838935-C-T A*
hg19:Y:28817176-G-A hg38:Y:26671029-G-A A*
hg19:Y:28816702-G-A hg38:Y:26670555-G-A A*
hg19:Y:25915594-G-A hg38:Y:23769447-G-A P1_Y1 A*
hg19:Y:19073865-T-C hg38:Y:16961985-T-C YYA*
hg19:Y:26365649-C-T hg38:Y:24219502-C-T P1_Y1 A*
hg19:Y:6145375-T-C hg38:Y:6277334-T-C IR3_Dst A*
hg19:Y:6145377-T-C hg38:Y:6277336-T-C IR3_Dst A*
hg19:Y:6145399-T-G hg38:Y:6277358-T-G IR3_Dst A*
hg19:Y:6176540-A-G hg38:Y:6308499-A-G IR3_Dst A*
hg19:Y:6321567-G-T hg38:Y:6453526-G-T IR3_Dst A*
hg19:Y:9478188-A-G hg38:Y:9640579-A-G A*
hg19:Y:16102573-G-A hg38:Y:13990693-G-A P8_Prx A*
hg19:Y:16344504-C-T hg38:Y:14232624-C-T YYA*
hg19:Y:17990000-T-C hg38:Y:15878120-T-C P7_Prx YA*
hg19:Y:18286821-C-G hg38:Y:16174941-C-G P6_Prx A*
hg19:Y:18314249-G-C hg38:Y:16202369-G-C P6_Prx A*
hg19:Y:18357116-G-T hg38:Y:16245236-G-T P6_Prx A*
hg19:Y:18373600-C-A hg38:Y:16261720-C-A P6_Prx A*
hg19:Y:18376572-T-C hg38:Y:16264692-T-C P6_Prx A*
hg19:Y:18377213-G-T hg38:Y:16265333-G-T P6_Prx A*
hg19:Y:18524955-G-T hg38:Y:16413075-G-T P6_Dst A*
hg19:Y:19573703-A-G hg38:Y:17461823-A-G P5_Prx YA*
hg19:Y:19617739-T-C hg38:Y:17505859-T-C P5_Prx YA*
hg19:Y:19693674-T-TTTA hg38:Y:17581794-T-TTTA P5_Prx A*
hg19:Y:19704241-G-C hg38:Y:17592361-G-C P5_Prx A*
hg19:Y:19711861-T-C hg38:Y:17599981-T-C P5_Prx A*
hg19:Y:19713399-C-T hg38:Y:17601519-C-T P5_Prx A*
hg19:Y:19748804-G-GC hg38:Y:17636924-G-GC P5_Prx A*
hg19:Y:19769464-A-AT hg38:Y:17657584-A-AT P5_Prx A*
hg19:Y:19769992-G-A hg38:Y:17658112-G-A P5_Prx A*
hg19:Y:19776308-A-G hg38:Y:17664428-A-G P5_Prx A*
hg19:Y:19827178-G-A hg38:Y:17715298-G-A P5_Prx A*
hg19:Y:19832203-C-T hg38:Y:17720323-C-T P5_Prx A*
hg19:Y:19847146-C-A hg38:Y:17735266-C-A P5_Prx A*
hg19:Y:19882134-C-T hg38:Y:17770254-C-T P5_Prx A*
hg19:Y:19916399-T-C hg38:Y:17804519-T-C P5_Prx A*
hg19:Y:19947830-G-A hg38:Y:17835950-G-A P5_Prx A*
hg19:Y:19951715-T-C hg38:Y:17839835-T-C P5_Prx A*
hg19:Y:19997969-A-G hg38:Y:17886089-A-G P5_Prx A*
hg19:Y:20022110-C-T hg38:Y:17910230-C-T P5_Prx A*
hg19:Y:20031997-T-C hg38:Y:17920117-T-C P5_Prx A*
hg19:Y:20131794-T-C hg38:Y:18019914-T-C P5_Dst A*
hg19:Y:20410305-G-GA hg38:Y:18248419-G-GA P5_Dst A*
hg19:Y:20486093-A-AAAT hg38:Y:18324207-A-AAAT P5_Dst A*
hg19:Y:20633775-C-T hg38:Y:18471889-C-T P4_Prx A*
hg19:Y:20649333-C-G hg38:Y:18487447-C-G P4_Prx A*
hg19:Y:20702767-C-T hg38:Y:18540881-C-T P4_Prx A*
hg19:Y:20724829-T-C hg38:Y:18562943-T-C P4_Prx A*
hg19:Y:20727826-T-C hg38:Y:18565940-T-C P4_Prx A*
hg19:Y:20729444-T-C hg38:Y:18567558-T-C P4_Prx A*
hg19:Y:20731501-A-C hg38:Y:18569615-A-C P4_Prx A*
hg19:Y:21006600-A-C hg38:Y:18844714-A-C P4_Dst YA*
hg19:Y:22290915-G-C hg38:Y:20129029-G-C DYZ19 A*
hg19:Y:23178343-G-A hg38:Y:21016457-G-A YA*
hg19:Y:24248994-A-G hg38:Y:22102847-A-G P3_b1 A*
hg19:Y:24270698-C-T hg38:Y:22124551-C-T P3_b1 A*
hg19:Y:24273492-T-A hg38:Y:22127345-T-A P3_b1 A*
hg19:Y:24285388-C-T hg38:Y:22139241-C-T P3_t1 A*
hg19:Y:24290574-C-G hg38:Y:22144427-C-G P3_t1 A*
hg19:Y:24588142-G-C hg38:Y:22441995-G-C P3_t2 A*
hg19:Y:25506938-A-G hg38:Y:23360791-A-G P1_gr1 A*
hg19:Y:25540309-A-G hg38:Y:23394162-A-G P1_gr1 A*
hg19:Y:25866866-A-T hg38:Y:23720719-A-T P1_Y1 A*
hg19:Y:25869519-C-T hg38:Y:23723372-C-T P1_Y1 A*
hg19:Y:25916048-G-T hg38:Y:23769901-G-T P1_Y1 A*
hg19:Y:25978724-A-G hg38:Y:23832577-A-G P1_Y1 A*
hg19:Y:25987605-G-A hg38:Y:23841458-G-A P1_Y1 A*
hg19:Y:26001740-A-G hg38:Y:23855593-A-G P1_Y1 A*
hg19:Y:26017210-C-T hg38:Y:23871063-C-T P1_Y1 A*
hg19:Y:26022625-C-A hg38:Y:23876478-C-A P1_Y1 A*
hg19:Y:26030774-C-T hg38:Y:23884627-C-T P1_Y1 A*
hg19:Y:26033636-T-G hg38:Y:23887489-T-G P1_Y1 A*
hg19:Y:26071702-A-G hg38:Y:23925555-A-G P1_Y1 A*
hg19:Y:26095810-C-T hg38:Y:23949663-C-T P1_Y1 A*
hg19:Y:26135025-A-T hg38:Y:23988878-A-T P1_Y1 A*
hg19:Y:26147850-T-G hg38:Y:24001703-T-G P1_Y1 A*
hg19:Y:26250790-G-A hg38:Y:24104643-G-A P1_Y1 A*
hg19:Y:26258421-C-A hg38:Y:24112274-C-A P1_Y1 A*
hg19:Y:26271056-A-G hg38:Y:24124909-A-G P1_Y1 A*
hg19:Y:26287546-G-A hg38:Y:24141399-G-A P1_Y1 A*
hg19:Y:26296201-T-A hg38:Y:24150054-T-A P1_Y1 A*
hg19:Y:26296202-A-T hg38:Y:24150055-A-T P1_Y1 A*
hg19:Y:26317432-G-T hg38:Y:24171285-G-T P1_Y1 A*
hg19:Y:26331401-C-T hg38:Y:24185254-C-T P1_Y1 A*
hg19:Y:26339234-C-T hg38:Y:24193087-C-T P1_Y1 A*
hg19:Y:26341852-C-A hg38:Y:24195705-C-A P1_Y1 A*
hg19:Y:26361970-T-C hg38:Y:24215823-T-C P1_Y1 A*
hg19:Y:26391169-C-T hg38:Y:24245022-C-T P1_Y1 A*
hg19:Y:26394820-T-G hg38:Y:24248673-T-G P1_Y1 A*
hg19:Y:26418759-G-A hg38:Y:24272612-G-A P1_Y1 A*
hg19:Y:26423797-C-A hg38:Y:24277650-C-A P1_Y1 A*
hg19:Y:26481748-G-A hg38:Y:24335601-G-A P1_Y1 A*
hg19:Y:26516707-A-G hg38:Y:24370560-A-G P1_Y1 A*
hg19:Y:26520526-A-C hg38:Y:24374379-A-C P1_Y1 A*
hg19:Y:26525202-C-T hg38:Y:24379055-C-T P1_Y1 A*
hg19:Y:27543682-C-T hg38:Y:25397535-C-T P1_Y2 A*
hg19:Y:27827410-T-A hg38:Y:25681263-T-A P1_Y2 A*
hg19:Y:28095504-T-A hg38:Y:25949357-T-A P1_Y2 A*
hg19:Y:28817087-A-T hg38:Y:26670940-A-T A*
hg19:Y:28817232-A-T hg38:Y:26671085-A-T A*
hg19:Y:28817562-T-G hg38:Y:26671415-T-G A*
hg19:Y:15226335-C-T hg38:Y:13114421-C-T S4629 Y+
hg19:Y:21842389-G-A hg38:Y:19680503-G-A FT292109 Y+
hg19:Y:21152670-T-C hg38:Y:18990784-T-C BY130723 Y+
hg19:Y:14767023-T-C hg38:Y:12655092-T-C Y15356 Z34226 YY+
hg19:Y:16045135-TTCTC-T hg38:Y:13933255-TTCTC-T 9×TC+
hg19:Y:16696833-TA-T hg38:Y:14584953-TA-T 9×A+
hg19:Y:20817776-G-A hg38:Y:18655890-G-A Y81615 BY56887Y105199 P4_Gap +
hg19:Y:18928828-C-T hg38:Y:16816948-C-T FTB33950 YY+
hg19:Y:3184141-G-A hg38:Y:3316100-G-A FTB42722 +
hg38:Y:10876221-C-A FT275588 +
hg38:Y:11663152-C-A FT275591 DYZ17 +
hg19:Y:14422754-G-T hg38:Y:12302029-G-T FTB33147 YY+
hg38:Y:11643558-C-T DYZ17 +
hg19:Y:4121590-G-T hg38:Y:4253549-G-T FTB42815 +
hg19:Y:15403437-G-A hg38:Y:13291557-G-A FGC28778 YY+
hg38:Y:10929363-G-T FT275590 +
hg38:Y:10761505-CTCCAT-C +
hg38:Y:11655091-C-T FT294499 DYZ17 +
hg19:Y:22961248-A-AT hg38:Y:20799362-A-AT 8×T+
hg19:Y:21902237-G-A hg38:Y:19740351-G-A FT182276 YY+
hg19:Y:4730771-T-C hg38:Y:4862730-T-C FT16800FT16800 +
hg19:Y:22281138-T-G hg38:Y:20119252-T-G DYZ19 +
hg19:Y:19765989-T-A hg38:Y:17654109-T-A P5_Prx +
hg38:Y:10976708-TTCCAC-T +
hg19:Y:2726680-A-G hg38:Y:2858639-A-G YY+
hg19:Y:2950508-T-C hg38:Y:3082467-T-C +
hg19:Y:3040567-T-C hg38:Y:3172526-T-C +
hg19:Y:3297957-A-C hg38:Y:3429916-A-C +
hg19:Y:4680856-T-C hg38:Y:4812815-T-C +
hg19:Y:4722967-G-C hg38:Y:4854926-G-C +
hg19:Y:4919455-T-C hg38:Y:5051414-T-C +
hg19:Y:4997133-A-G hg38:Y:5129092-A-G +
hg19:Y:5293892-A-G hg38:Y:5425851-A-G +
hg19:Y:5559804-T-G hg38:Y:5691763-T-G +
hg19:Y:5777812-G-A hg38:Y:5909771-G-A +
hg19:Y:5932871-T-C hg38:Y:6064830-T-C +
hg19:Y:5989893-G-A hg38:Y:6121852-G-A +
hg19:Y:5998938-A-G hg38:Y:6130897-A-G +
hg19:Y:6145408-A-C hg38:Y:6277367-A-C IR3_Dst +
hg19:Y:6145425-T-C hg38:Y:6277384-T-C IR3_Dst +
hg19:Y:6460411-G-A hg38:Y:6592370-G-A +
hg19:Y:6600722-T-A hg38:Y:6732681-T-A +
hg19:Y:6602304-T-G hg38:Y:6734263-T-G +
hg19:Y:6863686-G-C hg38:Y:6995645-G-C YY+
hg19:Y:7317465-T-G hg38:Y:7449424-T-G YY+
hg19:Y:7317980-G-C hg38:Y:7449939-G-C YY+
hg19:Y:7557674-G-A hg38:Y:7689633-G-A YY+
hg19:Y:7612790-T-C hg38:Y:7744749-T-C YY+
hg19:Y:7745443-G-T hg38:Y:7877402-G-T YY+
hg19:Y:7791767-T-C hg38:Y:7923726-T-C YY+
hg19:Y:7853537-A-T hg38:Y:7985496-A-T YY+
hg19:Y:8143809-A-G hg38:Y:8275768-A-G YY+
hg19:Y:8443193-A-C hg38:Y:8575152-A-C YY+
hg38:Y:9125469-C-T +
hg19:Y:8967528-G-T hg38:Y:9129919-G-T +
hg19:Y:9009148-G-C hg38:Y:9171539-G-C Y+
hg19:Y:9384979-C-G hg38:Y:9547370-C-G Y+
hg19:Y:9839122-A-G hg38:Y:10001513-A-G YY+
hg19:Y:10016728-C-T hg38:Y:10179119-C-T Y+
hg38:Y:10655762-C-T +
hg38:Y:10668195-C-T +
hg38:Y:10685301-G-A +
hg38:Y:10772279-T-G +
hg38:Y:10779595-A-G +
hg38:Y:10805381-A-G +
hg38:Y:10822305-C-T +
hg38:Y:10828512-T-C +
hg38:Y:10873413-C-T +
hg38:Y:10921766-A-G +
hg38:Y:10922024-A-G +
hg38:Y:10974206-TCCATTCCATTCCATC-T +
hg38:Y:10993634-A-G +
hg38:Y:10999092-C-T +
hg38:Y:11001039-A-G +
hg38:Y:11016237-C-T +
hg38:Y:11029796-T-G +
hg38:Y:11033961-C-T +
hg19:Y:13358265-C-A hg38:Y:11202589-C-A +
hg19:Y:13416481-G-T hg38:Y:11260805-G-T +
hg19:Y:13591995-G-A hg38:Y:11436319-G-A +
hg19:Y:13667041-C-T hg38:Y:11511365-C-T DYZ17 +
hg19:Y:13667177-G-A hg38:Y:11511501-G-A DYZ17 +
hg38:Y:11663064-A-G DYZ17 +
hg38:Y:11668842-T-C DYZ17 +
hg38:Y:11671568-C-G DYZ17 +
hg19:Y:13996237-C-T hg38:Y:11875531-C-T Y+
hg19:Y:14241829-G-A hg38:Y:12121123-G-A Y+
hg19:Y:14481770-A-T hg38:Y:12361039-A-T YY+
hg19:Y:14817138-T-G hg38:Y:12705209-T-G YY+
hg19:Y:14866273-C-T hg38:Y:12754343-C-T YY+
hg19:Y:15044435-A-C hg38:Y:12932525-A-C Y+
hg19:Y:15280491-G-A hg38:Y:13168590-G-A YY+
hg19:Y:15488973-G-A hg38:Y:13377093-G-A YY+
hg19:Y:15610543-G-T hg38:Y:13498663-G-T YY+
hg19:Y:15989055-G-A hg38:Y:13877175-G-A YY+
hg19:Y:16002514-G-A hg38:Y:13890634-G-A Y+
hg19:Y:16176314-A-G hg38:Y:14064434-A-G Y+
hg19:Y:16601842-A-C hg38:Y:14489962-A-C YY+
hg19:Y:17277590-G-C hg38:Y:15165710-G-C YY+
hg19:Y:17511853-T-G hg38:Y:15399973-T-G YY+
hg19:Y:17757778-C-G hg38:Y:15645898-C-G YY+
hg19:Y:17847190-T-G hg38:Y:15735310-T-G YY+
hg19:Y:18029743-G-A hg38:Y:15917863-G-A Y+
hg19:Y:18076760-C-A hg38:Y:15964880-C-A YY+
hg19:Y:18669504-A-T hg38:Y:16557624-A-T YY+
hg19:Y:18902964-G-T hg38:Y:16791084-G-T YY+
hg19:Y:19300662-G-A hg38:Y:17188782-G-A Y+
hg19:Y:19403302-G-A hg38:Y:17291422-G-A YY+
hg19:Y:19457389-C-T hg38:Y:17345509-C-T YY+
hg19:Y:19563072-G-T hg38:Y:17451192-G-T Y+
hg19:Y:19609394-C-T hg38:Y:17497514-C-T P5_Prx Y+
hg19:Y:19611156-C-T hg38:Y:17499276-C-T P5_Prx Y+
hg19:Y:20804674-T-A hg38:Y:18642788-T-A P4_Gap +
hg19:Y:21244513-T-C hg38:Y:19082627-T-C YY+
hg19:Y:21391125-G-C hg38:Y:19229239-G-C YY+
hg19:Y:21487658-ATGTCTTAGTTAATTTGC-A hg38:Y:19325772-ATGTCTTAGTTAATTTGC-A +
hg19:Y:21549496-C-T hg38:Y:19387610-C-T YY+
hg19:Y:21557249-C-A hg38:Y:19395363-C-A YY+
hg19:Y:21834743-A-G hg38:Y:19672857-A-G Y+
hg19:Y:21925571-C-T hg38:Y:19763685-C-T YY+
hg19:Y:22187069-G-T hg38:Y:20025183-G-T YY+
hg19:Y:22340551-G-C hg38:Y:20178665-G-C DYZ19 +
hg19:Y:22517499-G-T hg38:Y:20355613-G-T Y+
hg19:Y:22611331-G-T hg38:Y:20449445-G-T YY+
hg19:Y:22935961-A-G hg38:Y:20774075-A-G YY+
hg19:Y:23041199-A-G hg38:Y:20879313-A-G YY+
hg19:Y:23066525-C-G hg38:Y:20904639-C-G Y+
hg19:Y:23130272-G-A hg38:Y:20968386-G-A YY+
hg19:Y:23419024-A-G hg38:Y:21257138-A-G YY+
hg19:Y:23430694-A-T hg38:Y:21268808-A-T YY+
hg19:Y:23456534-A-C hg38:Y:21294648-A-C YY+
hg19:Y:23539081-C-T hg38:Y:21377195-C-T YY+
hg19:Y:23731652-C-A hg38:Y:21569766-C-A +
hg38:Y:21755706-A-G +
hg19:Y:24473504-T-C hg38:Y:22327357-T-C Y+
hg19:Y:28705583-G-A hg38:Y:26559436-G-A +
hg19:Y:28790141-T-C hg38:Y:26643994-T-C +
hg19:Y:28076522-CCTTTCTTTCTTT-C hg38:Y:25930375-CCTTTCTTTCTTT-C P1_Y2 13×CTTT*
hg19:Y:24365177-AAGAGATAGAGAT-A hg38:Y:22219030-AAGAGATAGAGAT-A Y4354 8×AGAGAT*
hg19:Y:7840755-C-CA hg38:Y:7972714-C-CA 9×A*
hg19:Y:13262911-C-A hg38:Y:11107235-C-A *
hg19:Y:13694901-G-T hg38:Y:11539225-G-T DYZ17 *
hg19:Y:7730430-TGATAGATA-T hg38:Y:7862389-TGATAGATA-T 11×GATA*
hg19:Y:17737881-C-CA hg38:Y:15626001-C-CA 9×A*
hg19:Y:19127627-C-CAAA hg38:Y:17015747-C-CAAA 17×A*
hg38:Y:10839553-TTTCCA-T *
hg19:Y:18361444-GA-G hg38:Y:16249564-GA-G P6_Prx 17×A*
hg19:Y:5753522-C-CT hg38:Y:5885481-C-CT 10×T*
hg19:Y:17781493-AT-A hg38:Y:15669613-AT-A *
hg19:Y:27461936-T-G hg38:Y:25315789-T-G P1_Y2 27×TG*
hg19:Y:8555979-T-TTTTTGTTTTG hg38:Y:8687938-T-TTTTTGTTTTG 8×TTTTG*
hg19:Y:8725857-T-TAC hg38:Y:8857816-T-TAC 9×AC*
hg19:Y:21175799-T-TA hg38:Y:19013913-T-TA 8×A*
hg19:Y:2685639-CTTTTC-C,CTTTTT hg38:Y:2817598-CTTTTC-C,CTTTTT *
hg19:Y:6388640-T-C hg38:Y:6520599-T-C *
hg19:Y:6858592-CTTTTTTTTT-C,CT hg38:Y:6990551-CTTTTTTTTT-C,CT 25×T*
hg38:Y:10876372-C-CTTCCATTCCA *
hg19:Y:15278801-A-T hg38:Y:13166895-A-T YY*
hg19:Y:16441973-A-ATC hg38:Y:14330093-A-ATC *
hg19:Y:16692130-A-ACC hg38:Y:14580250-A-ACC *
hg19:Y:17819937-A-ATGTG hg38:Y:15708057-A-ATGTG 9×TG*
hg19:Y:19261317-A-AGTGT hg38:Y:17149437-A-AGTGT 9×GT*
hg19:Y:22658399-A-AT hg38:Y:20496513-A-AT 8×T*
hg19:Y:26044004-A-G hg38:Y:23897857-A-G P1_Y1 *
hg19:Y:27827555-C-T hg38:Y:25681408-C-T P1_Y2 *
hg38:Y:56871630-AA-A,AAT *
hg19:Y:18395723-T-A hg38:Y:16283843-T-A BY31276 P6_Gap 27×TA**
hg19:Y:13718270-C-T hg38:Y:11562594-C-T L1428 DYZ17 **
hg19:Y:25995563-C-A hg38:Y:23849416-C-A P1_Y1 **
hg38:Y:11007669-A-T FT294498 **
hg19:Y:20579119-CAT-C hg38:Y:18417233-CAT-C P5_Dst **
hg19:Y:26463097-CT-C hg38:Y:24316950-CT-C P1_Y1 36×T**
hg38:Y:10954280-GCATTCCATTC-G **
hg19:Y:13699008-C-A hg38:Y:11543332-C-A DYZ17 **
hg38:Y:10790223-C-T **
hg38:Y:11014679-CCTCCA-C **
hg38:Y:12675896-ATATTT-A **
hg19:Y:19753404-T-C hg38:Y:17641524-T-C P5_Prx **
hg19:Y:16116326-C-A hg38:Y:14004446-C-A P8_Prx **
hg38:Y:10810567-GTTCCA-G **
hg19:Y:13459145-C-A hg38:Y:11303469-C-A **
hg38:Y:56752224-T-TTCGAATGGAATGCAA **
hg19:Y:13459320-G-A hg38:Y:11303644-G-A 5×CATTC**
hg19:Y:6523295-AAT-A hg38:Y:6655254-AAT-A **
hg19:Y:13278845-C-T hg38:Y:11123169-C-T **
hg19:Y:13460511-A-T hg38:Y:11304835-A-T **
hg19:Y:13460511-AG-A hg38:Y:11304835-AG-A **
hg19:Y:14686067-T-C hg38:Y:12574133-T-C **
hg19:Y:16601628-AAAATATAT-A hg38:Y:14489748-AAAATATAT-A **
hg19:Y:18454889-CTT-C hg38:Y:16343009-CTT-C P6_Dst **
hg19:Y:19745477-T-TC hg38:Y:17633597-T-TC P5_Prx **
hg19:Y:19915432-A-C hg38:Y:17803552-A-C P5_Prx **
hg19:Y:20509421-C-G hg38:Y:18347535-C-G P5_Dst **
hg19:Y:22442251-T-C hg38:Y:20280365-T-C DYZ19 **
hg19:Y:22459986-T-C hg38:Y:20298100-T-C DYZ19 **
hg19:Y:22471050-C-T hg38:Y:20309164-C-T DYZ19 **
hg19:Y:22487348-C-A hg38:Y:20325462-C-A DYZ19 **
hg19:Y:24612840-A-ATTTTTTTTTT hg38:Y:22466693-A-ATTTTTTTTTT P3_t2 16×T**
hg19:Y:28795886-T-C hg38:Y:26649739-T-C **
hg38:Y2:11707-G-T **
hg19:Y:18892206-TTTTTATTTTATTTTA-T hg38:Y:16780326-TTTTTATTTTATTTTA-T 14×TTTTA***
hg19:Y:2749355-G-GT hg38:Y:2881314-G-GT BY3501 BY18924 9×T***
hg19:Y:28813026-G-A hg38:Y:26666879-G-A ***
hg19:Y:23825753-CA-C hg38:Y:21663867-CA-C 21×A***
hg19:Y:17919692-A-AG hg38:Y:15807812-A-AG FGC22503 8×G***
hg19:Y:13447107-TATTCCATTCC-T hg38:Y:11291431-TATTCCATTCC-T 9×ATTCC***
hg38:Y:10801704-T-C ***
hg19:Y:6767604-TAA-T hg38:Y:6899563-TAA-T 13×A***
hg19:Y:23415342-ATTTTTT-A hg38:Y:21253456-ATTTTTT-A 21×T***
hg38:Y:10982191-CTCCATTCCAT-C ***
hg19:Y:13963824-ATTTTTTTTTTTTTTTTTTTTT-A hg38:Y:11843118-ATTTTTTTTTTTTTTTTTTTTT-A 49×T***
hg19:Y:6944943-CAAAAAAA-C hg38:Y:7076902-CAAAAAAA-C 28×A***
hg19:Y:8533407-CTT-C,CT hg38:Y:8665366-CTT-C,CT 14×T***
hg19:Y:17313243-TTGTAC-T hg38:Y:15201363-TTGTAC-T 6×TGTAC***
hg19:Y:23415346-T-A hg38:Y:21253460-T-A ***
hg19:Y:4976115-AC-A,AA hg38:Y:5108074-AC-A,AA ***
hg19:Y:10014059-A-C hg38:Y:10176450-A-C ***
hg38:Y:56828428-C-G ***
hg19:Y:13535681-AT-A hg38:Y:11380005-AT-A 9×TG***
hg19:Y:4120195-AACACACAC-A hg38:Y:4252154-AACACACAC-A 21×AC***
hg19:Y:2772512-CAAAAA-C,CAAA hg38:Y:2904471-CAAAAA-C,CAAA 25×A***
hg19:Y:4471003-CTTT-C,CT hg38:Y:4602962-CTTT-C,CT 29×T***
hg19:Y:5937236-CTCTCTCTATATA-C,CTATATA hg38:Y:6069195-CTCTCTCTATATA-C,CTATATA ***
hg19:Y:6918564-AAAG-A,AA hg38:Y:7050523-AAAG-A,AA ***
hg19:Y:8184609-A-ATATAC hg38:Y:8316568-A-ATATAC ***
hg19:Y:8379144-C-CTTCTTTCTTTCT hg38:Y:8511103-C-CTTCTTTCTTTCT 15×TTCT***
hg38:Y:10746994-ATTCCG-A,ATTCCA ***
hg38:Y:10925486-T-TTCCAC ***
hg19:Y:13820775-T-TATGGAATGGAATGGA hg38:Y:11700069-T-TATGGAATGGAATGGA DYZ17 11×ATGGA***
hg19:Y:13932163-ATATAAT-A,AAT hg38:Y:11811457-ATATAAT-A,AAT ***
hg38:Y:12297437-G-GTATATATATATGTATATATATATATA ***
hg19:Y:14510449-GAAAAAAAA-G hg38:Y:12398654-GAAAAAAAA-G 21×A***
hg19:Y:16364099-TATATATATATATAC-T,TAT hg38:Y:14252219-TATATATATATATAC-T,TAT ***
hg19:Y:17030757-ATTTT-A,ATT hg38:Y:14918877-ATTTT-A,ATT 24×T***
hg19:Y:17081284-TAT-T,TAA hg38:Y:14969404-TAT-T,TAA ***
hg19:Y:17950825-AATATATATATATATATATATATATATAT-A,AATAT hg38:Y:15838945-AATATATATATATATATATATATATATAT-A,AATAT 27×AT***
hg19:Y:18872070-CCTTCCTTCCTTT-C,CCTTCCTTCCTTC hg38:Y:16760190-CCTTCCTTCCTTT-C,CCTTCCTTCCTTC ***
hg19:Y:19073865-TATAT-T,TAC hg38:Y:16961985-TATAT-T,TAC ***
hg19:Y:19187385-ATTTTTTT-A,AT hg38:Y:17075505-ATTTTTTT-A,AT 28×T***
hg19:Y:19187446-CTTTTT-C,CT hg38:Y:17075566-CTTTTT-C,CT 34×T***
hg19:Y:20025478-TCTCT-T,TC hg38:Y:17913598-TCTCT-T,TC P5_Prx ***
hg19:Y:20045279-AAAG-A,AAAAG hg38:Y:17933399-AAAG-A,AAAAG P5_Prx ***
hg19:Y:21138770-A-G,GG hg38:Y:18976884-A-G,GG ***
hg19:Y:24278262-GAAAGAAAGAGAA-G,GAAAG hg38:Y:22132115-GAAAGAAAGAGAA-G,GAAAG P3_b1 ***
hg19:Y:24415755-TA-T hg38:Y:22269608-TA-T ***
hg19:Y:27616431-A-G hg38:Y:25470284-A-G P1_Y2 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN863741513094995453038412627
Used in age calculations1513094995453038412627
Counts of SNPs7653
Variant counts last updated 2025-11-30 02:51:39.


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