Tree Position

R-M269 > L23 > L51 > P310 > L151 > S1194 > S1200 > S14328 > 13184964-C-G

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
20757314-G-T 18595428-G-T P4_Prx A*
25587242-C-CT 23441095-C-CT P1_gr1 14×TA*
21756115-G-A A*
21756109-T-C A*
25599447-G-GA 23453300-G-GA P1_gr1 19×AA*
21755998-G-A FTB16910 A*
13842815-A-G 11722109-A-G A*
25945002-G-GT 23798855-G-GT P1_Y1 16×TA*
21756067-A-T FTB16911 A*
21756061-G-A A*
20720848-G-GA 18558962-G-GA P4_Prx 11×AA*
13693214-A-C 11537538-A-C A*
21756117-C-A A*
28008036-C-CA 25861889-C-CA P1_Y2 17×AA*
19588714-A-G 17476834-A-G P5_Prx YA*
21756100-T-C FT332655 A*
20661415-A-G 18499529-A-G P4_Prx A*
7646928-A-AAT 7778887-A-AAT 11×ATA*
7310271-C-CT 7442230-C-CT 13×TA*
26227741-G-A 24081594-G-A P1_Y1 A*
26112386-A-G 23966239-A-G P1_Y1 A*
26000576-T-C 23854429-T-C P1_Y1 A*
19745560-G-GA 17633680-G-GA P5_Prx 11×AA*
6402306-A-T 6534265-A-T A*
56829319-G-A A*
14424209-A-T 12303484-A-T YY+
3954902-G-A 4086861-G-A +
3966620-G-C 4098579-G-C +
7962413-GCTAA-G 8094372-GCTAA-G +
9389213-G-GTT 9551604-G-GTT +
19058899-A-T 16947019-A-T A9870 YY+
18829335-C-CAT 16717455-C-CAT +
14002603-G-A 11881897-G-A YY+
14244469-CT-C 12123763-CT-C +
22093209-T-C 19931323-T-C YY+
14378159-A-C 12257455-A-C YY+
14424208-G-T 12303483-G-T YY+
17271688-G-T 15159808-G-T YY+
17531140-C-T 15419260-C-T YY+
17842104-A-G 15730224-A-G YY+
19212474-G-GT 17100594-G-GT +
24485641-G-A 22339494-G-A +
13954065-T-A 11833359-T-A FTB33011 Y*
5936147-G-T 6068106-G-T FTB20177 *
56867474-T-TAA *
2708411-C-CGAGA 2840370-C-CGAGA 23×GA*
13449752-T-G 11294076-T-G *
20757331-A-T 18595445-A-T P4_Prx **
26089061-CAAAA-C 23942914-CAAAA-C P1_Y1 20×A**
7360581-C-A 7492540-C-A FT259684 **
20757355-G-T 18595469-G-T P4_Prx **
19753304-TA-T 17641424-TA-T P5_Prx 9×A**
5474213-A-AT 5606172-A-AT 9×T**
19878162-A-G 17766282-A-G P5_Prx **
19183839-T-G 17071959-T-G **
13454852-CAT-AGG 11299176-CAT-AGG **
6250283-C-A 6382242-C-A IR3_Dst **
25967698-T-A 23821551-T-A BY180974 P1_Y1 **
14246986-G-T 12126280-G-T **
14256601-A-G 12135895-A-G **
15098032-G-T 12986120-G-T **
20318892-T-TA 18157006-T-TA P5_Dst 27×A**
22233191-A-T 20071305-A-T DYZ19 **
22271245-T-G 20109359-T-G DYZ19 **
24096059-G-A 21949912-G-A P3_b1 **
10002379-A-G 10164770-A-G **
28803196-G-T 26657049-G-T **
14425195-CAA-C 12304470-CAA-C 15×A**
28791066-TG-T 26644919-TG-T **
22478884-G-C 20316998-G-C FT460176 DYZ19 **
28791062-C-CG 26644915-C-CG **
28070146-TAC-T 25923999-TAC-T P1_Y2 11×AC**
28803222-T-C 26657075-T-C **
20700700-C-G 18538814-C-G P4_Prx **
16227897-AGAAG-A 14116017-AGAAG-A 8×GAAG**
7573145-CA-C 7705104-CA-C 22×A**
13453435-G-A 11297759-G-A ***
13454870-T-A 11299194-T-A ***
13606877-CAAAAAA-C,CA 11451201-CAAAAAA-C,CA 25×A***
13803025-A-C 11682319-A-C ***
5797434-G-GATAT 5929393-G-GATAT 21×AT***
59008768-C-CT 56862621-C-CT 14×T***
3746224-C-CA 3878183-C-CA 13×A***
15012462-AT-A 12900550-AT-A 14×T***
13933716-C-CA 11813010-C-CA 17×A***
14938630-G-GA 12826705-G-GAA 19×A***
14609825-T-A 12498027-T-A BY96788 ***
3588094-GTATA-G 3720053-GTATA-G 24×TA***
59006817-G-GA 56860670-G-GA 9×A***
2739932-G-GT 2871891-G-GT 10×T***
19505547-AAT-A 17393667-AAT-A 8×AT***
17196672-GAAGA-G 15084792-GAAGA-G 18×AAGA***
17239290-T-TTATA 15127410-T-TTATA 17×TA***
9700317-GAAC-G 9862708-GAAC-G IR3_Prx 7×AAC***
7021709-CT-C 7153668-CT-C 17×T***
15658102-GTA-G 13546222-GTA-G ***
3079561-TAA-T 3211520-TAA-T 18×A***
8901076-CAT-C 9033035-CAT-C 15×AT***
27810259-A-G 25664112-A-G P1_Y2 ***
28477992-CA-C 26331845-CA-C 17×A***
19138110-C-CTA 17026230-C-CTA 9×TA***
4026316-G-A 4158275-G-A ***
18395723-TTATATA-T 16283843-TTATATA-T P6_Gap 27×TA***
4471003-CTTTTT-C,CTTT 4602962-CTTTTT-C,CTTT 29×T***
13456547-T-C 11300871-T-C ***
2775124-AT-A 2907083-AT-A 14×T***
5937240-CTC-C,CTA 6069199-CTC-C,CTA ***
2729648-CT-C 2861607-CT-C 25×T***
10969340-A-C ***
13205596-AT-A,AA 11049920-AT-A,AA ***
4511188-AAG-A 4643147-AAG-A ***
9057551-AT-A ***
10969346-T-G ***
3270924-A-AT 3402883-A-AT 25×T***
4156847-A-G 4288806-A-G ***
20989104-TACACACACAC-T 18827218-TACACACACAC-T P4_Dst 25×AC***
15832216-CTTT-C 13720336-CTTT-C 22×T***
19436730-AAGAAAGAA-A,AAG 17324850-AAGAAAGAA-A,AAG ***
18928570-CAAAAAA-C 16816690-CAAAAAA-C 28×A***
17319880-G-GAAGAAAGA 15208000-G-GAAGAAAGA 16×AAGA***
8690208-ATTTT-A 8822167-ATTTT-A 29×T***
16590873-CAA-C 14478993-CAA-C 17×A***
3978697-C-T 4110656-C-T ***
13454883-A-G 11299207-A-G ***
10678573-C-A ***
18518312-G-T 16406432-G-T P6_Dst ***
4848352-AT-A,AA 4980311-AT-A,AA ***
23415308-GTATGTA-G,GTATA 21253422-GTATGTA-G,GTATA ***
13932166-TA-T 11811460-TA-T ***
5434002-TA-T 5565961-TA-T ***
10678556-A-C ***
10678575-C-T ***
4976787-C-CA 5108746-C-CA 21×A***
12730473-A-AT 21×T***
3548670-A-AT 3680629-A-AT 17×T***
24389894-CTTT-C,CTT 22243747-CTTT-C,CTT 26×T***
21662148-TAA-T 19500262-TAA-T 14×A***
13478278-G-T 11322602-G-T ***
13448723-C-G 11293047-C-G ***
10927393-A-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: 2509811523129895782218408536
Used in age calculations1523129895782218408536
Counts of SNPs119
Variant counts last updated 2022-07-13 03:00:43.

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