Rajgobin
Kane-Dante: 60820188480958MDKA Birth: India
Tree Position
Unique Mutations
The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.
Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.
POS-REF-ALT (hg19) | POS-REF-ALT (hg38) | Blocks | Names | Region | McDonald BED | combBED | STR | Kane-Dante 60820188480958 |
---|---|---|---|---|---|---|---|---|
17920941-CAAAAAAAAAAAAAAAAAAAAAAAAA-C | 15809061-CAAAAAAAAAAAAAAAAAAAAAAAAA-C | 45×A | + | |||||
13963824-AT-A | 11843118-AT-A | 49×T | + | |||||
13203846-A-G | 11048170-A-G | + | ||||||
13203850-T-TGGA | 11048174-T-TGGA | + | ||||||
14025579-A-AAAGC | 11904873-A-AAAGC | + | ||||||
14695992-CAAAAAAAAAA-C | 12584058-CAAAAAAAAAA-C | 30×A | + | |||||
15411308-CAAAAAAAAA-C | 13299428-CAAAAAAAAA-C | 30×A | + | |||||
18395765-AT-A | 16283885-AT-A | P6_Gap | + | |||||
18395767-ATATATATAT-A | 16283887-ATATATATAT-A | P6_Gap | + | |||||
18679925-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA | 16568045-C-CAAAAAAAAAAAAAAAAAAAAAAAAAAA | 25×A | + | |||||
19206741-T-TAAAAAAAAAAAAAAAAAAAAAAAA | 17094861-T-TAAAAAAAAAAAAAAAAAAAAAAAA | 29×A | + | |||||
19436726-AAGAAAGAAAGAAAG-A | 17324846-AAGAAAGAAAGAAAG-A | + | ||||||
20105782-C-G | 17993902-C-G | P5_Dst | + | |||||
20105783-TATC-T | 17993903-TATC-T | P5_Dst | + | |||||
23041198-GAAAAAAAAAAAAA-G | 20879312-GAAAAAAAAAAAAA-G | 34×A | + | |||||
23777975-T-A | 21616089-T-A | Y | + | |||||
26333-C-G | + | |||||||
13721883-T-C | 11566207-T-C | * | ||||||
9231698-AACACACACACACAC-A | 9394089-AACACACACACACAC-A | 22×AC | *** | |||||
13932167-A-T | 11811461-A-T | FT311449 | Y | 11×AT | * | |||
13932166-T-A | 11811460-T-A | Y | * | |||||
22326193-A-G | 20164307-A-G | DYZ19 | * | |||||
13466335-A-T | 11310659-A-T | * | ||||||
13466342-A-C | 11310666-A-C | * | ||||||
22446531-C-A | 20284645-C-A | DYZ19 | * | |||||
22306287-G-T | 20144401-G-T | DYZ19 | * | |||||
22428185-G-T | 20266299-G-T | DYZ19 | * | |||||
13718507-A-C | 11562831-A-C | * | ||||||
16868746-C-CAT | 14756866-C-CAT | 22×AT | * | |||||
59020428-T-C | 56874281-T-C | * | ||||||
13448203-T-TCCATC,TCCATTCCATC | 11292527-T-TCCATC,TCCATTCCATC | * | ||||||
28812345-G-A | 26666198-G-A | * | ||||||
13707163-T-G | 11551487-T-G | * | ||||||
22186713-C-CA,CAA | 20024827-C-CA,CAA | 16×A | * | |||||
13571665-AT-A,ATT | 11415989-AT-A,ATT | 17×T | * | |||||
23293598-GTATATA-G,GTA | 21131712-GTATATA-G,GTA | 20×TA | * | |||||
3403261-CAAA-C,CA | 3535220-CAAA-C,CA | 30×A | * | |||||
13468062-A-C | 11312386-A-C | * | ||||||
13448910-A-AGTCCACTCCACTCAACTCCC | 11293234-A-AGTCCACTCCACTCAACTCCC | * | ||||||
12730473-A-AT,ATT | 21×T | *** | ||||||
4848354-ATAT-A | 4980313-ATAT-A | * | ||||||
5308799-TAGAGAGAG-T,TATATATATATAGAGAGAGAGAG | 5440758-TAGAGAGAG-T,TATATATATATAGAGAGAGAGAG | 19×AG | * | |||||
6225989-CTTCT-C,CTTCTTTCTTTCTTTCT | 6357948-CTTCT-C,CTTCTTTCTTTCTTTCT | IR3_Dst | 13×TTCT | * | ||||
7310571-CT-C,C | 7442530-CT-C,C | 21×T | * | |||||
7383851-C-CAAAAAAAAAAAAA,CAAAAAAAAAAAAAA | 7515810-C-CAAAAAAAAAAAAA,CAAAAAAAAAAAAAA | 24×A | * | |||||
7723829-GAAGAAAAGAAAAGAA-G,GAAGAA | 7855788-GAAGAAAAGAAAAGAA-G,GAAGAA | 12×AAGAA | * | |||||
9347771-AG-A | 9510162-AG-A | * | ||||||
9347775-G-T | 9510166-G-T | Y | * | |||||
13204307-G-A,GTGATGGTGATGATAATGGTGATAATGACGGTATGATGGTAGTGATAATGGTGATGGTGATGGTGATGATGATGA | 11048631-G-A,GTGATGGTGATGATAATGGTGATAATGACGGTATGATGGTAGTGATAATGGTGATGGTGATGGTGATGATGATGA | * | ||||||
13275648-G-GT | 11119972-G-GT | 8×T | * | |||||
13448872-TTC-T | 11293196-TTC-T | * | ||||||
13448876-T-TAC | 11293200-T-TAC | * | ||||||
13468064-G-T | 11312388-G-T | * | ||||||
13718751-G-A | 11563075-G-A | * | ||||||
13726423-C-G,T | 11570747-C-G,T | * | ||||||
14392171-GA-G,G | 12271467-GA-G,G | 16×A | * | |||||
22231560-T-A | 20069674-T-A | DYZ19 | * | |||||
22255326-G-A | 20093440-G-A | DYZ19 | * | |||||
22299685-G-A | 20137799-G-A | DYZ19 | * | |||||
22299701-TTA-T | 20137815-TTA-T | DYZ19 | * | |||||
22299704-A-AGC | 20137818-A-AGC | DYZ19 | * | |||||
22299708-A-G | 20137822-A-G | BY216792 | DYZ19 | * | ||||
22299710-G-A | 20137824-G-A | DYZ19 | * | |||||
22321823-T-A | 20159937-T-A | DYZ19 | * | |||||
22326027-G-C | 20164141-G-C | DYZ19 | * | |||||
22326140-A-G | 20164254-A-G | DYZ19 | * | |||||
22326333-C-A | 20164447-C-A | DYZ19 | * | |||||
22327246-G-A | 20165360-G-A | DYZ19 | * | |||||
22336670-T-A | 20174784-T-A | DYZ19 | * | |||||
22876964-TA-T,T | 20715078-TA-T,T | 20×A | * | |||||
27791909-C-CTTCTTA | 25645762-C-CTTCTTA | P1_Y2 | * | |||||
56831197-A-ACCATT,ACCATTCCATT | 4×CCATT | * | ||||||
56874551-G-A | * | |||||||
56884423-T-TAATATATATATATATATATATATA | * | |||||||
6226098-C-T | 6358057-C-T | BY42658 | IR3_Dst | ** | ||||
13453278-CAGTTTGATTCCATTT-C | 11297602-CAGTTTGATTCCATTT-C | ** | ||||||
58854275-T-G | 56736596-A-C | ** | ||||||
28030724-T-TTTTCTTTCTTTCTTTC | 25884577-T-TTTTCTTTCTTTCTTTC | P1_Y2 | 14×TTTC | ** | ||||
13453304-C-A | 11297628-C-A | ** | ||||||
2930319-G-GTT | 3062278-G-GTT | 26×T | ** | |||||
10969002-A-C | ** | |||||||
9040925-A-AAT | 9203316-A-AAT | 17×AT | ** | |||||
10387327-T-A | ** | |||||||
10387336-A-T | ** | |||||||
10387339-T-G | ** | |||||||
10387342-A-T | ** | |||||||
10387345-G-A | ** | |||||||
10387348-A-C | ** | |||||||
17794226-CTT-C | 15682346-CTT-C | ** | ||||||
17794234-C-CTT | 15682354-C-CTT | 4×TCTT | ** | |||||
21569958-T-TAAAAAAAA | 19408072-T-TAAAAAAAA | 46×A | ** | |||||
56683923-A-G | ** | |||||||
56736561-C-G | ** | |||||||
20725-C-T | ** | |||||||
13748527-C-T | 11592851-C-T | *** | ||||||
28812239-G-A | 26666092-G-A | *** | ||||||
9330142-G-C | 9492533-G-C | *** | ||||||
13734178-A-C | 11578502-A-C | *** | ||||||
27644230-C-CA | 25498083-C-CA | P1_Y2 | 12×A | *** | ||||
22439450-G-A | 20277564-G-A | DYZ19 | *** | |||||
13283394-G-T | 11127718-G-T | *** | ||||||
13287080-T-C | 11131404-T-C | *** | ||||||
13287081-G-A | 11131405-G-A | *** | ||||||
15854157-T-A | 13742277-T-A | *** | ||||||
5674964-C-T | 5806923-C-T | *** | ||||||
13691024-A-C | 11535348-A-C | *** | ||||||
13712548-T-C | 11556872-T-C | *** | ||||||
13722677-G-T | 11567001-G-T | *** | ||||||
22429970-T-C | 20268084-T-C | DYZ19 | *** | |||||
22281736-C-A | 20119850-C-A | DYZ19 | *** | |||||
13503528-T-TACACAC | 11347852-T-TACACAC | *** | ||||||
13448850-A-T | 11293174-A-T | *** | ||||||
13696873-T-A | 11541197-T-A | *** | ||||||
58908611-A-T | 56682260-T-A | *** | ||||||
13448843-C-G | 11293167-C-G | *** | ||||||
58903936-C-T | 56686935-G-A | *** | ||||||
22286590-T-C | 20124704-T-C | DYZ19 | *** | |||||
22299676-C-A | 20137790-C-A | DYZ19 | *** | |||||
28686423-C-A | 26540276-C-A | 21×A | *** | |||||
14765702-C-A | 12653771-C-A | *** | ||||||
14620969-T-C | 12509167-T-C | *** | ||||||
14620974-T-A | 12509172-T-A | *** | ||||||
16575396-GA-G | 14463516-GA-G | 10×A | *** | |||||
7075240-CAAA-C | 7207199-CAAA-C | 17×A | *** | |||||
19130771-TG-T | 17018891-TG-T | *** | ||||||
8288845-G-T | 8420804-G-T | *** | ||||||
8288850-G-T | 8420809-G-T | *** | ||||||
13497062-C-A | 11341386-C-A | *** | ||||||
15507817-G-T | 13395937-G-T | *** | ||||||
22715144-TAAA-T | 20553258-TAAA-T | 23×A | *** | |||||
5937236-CTCTCTCTATA-C | 6069195-CTCTCTCTATA-C | *** | ||||||
11014947-G-T | *** | |||||||
14490723-C-T | 12369992-C-T | *** | ||||||
13364173-T-A | 11208497-T-A | *** | ||||||
14490702-G-C | 12369971-G-C | *** | ||||||
18402409-T-C | 16290529-T-C | P6_Gap | *** | |||||
18402421-T-C | 16290541-T-C | P6_Gap | *** | |||||
7223194-CAA-C | 7355153-CAA-C | 22×A | *** | |||||
21402181-C-CT | 19240295-C-CT | 34×T | *** | |||||
15575080-C-A | 13463200-C-A | *** | ||||||
13696899-C-T | 11541223-C-T | *** | ||||||
18679953-G-T | 16568073-G-T | *** | ||||||
13449394-C-A | 11293718-C-A | *** | ||||||
16340172-G-T | 14228292-G-T | MF4306 | *** | |||||
14474496-A-G | 12353765-A-G | *** | ||||||
16905896-G-T | 14794016-G-T | *** | ||||||
9006862-AT-A | 9169253-AT-A | 10×T | *** | |||||
56860703-G-A | *** | |||||||
18238964-G-A | 16127084-G-A | *** | ||||||
3016678-C-T | 3148637-C-T | *** | ||||||
14490668-AT-A | 12369937-AT-A | *** | ||||||
7150402-T-A | 7282361-T-A | *** | ||||||
13734212-G-A | 11578536-G-A | *** | ||||||
13513298-G-T | 11357622-G-T | *** | ||||||
13709244-T-C | 11553568-T-C | *** | ||||||
4600675-T-C | 4732634-T-C | *** | ||||||
14490691-C-A | 12369960-C-A | *** | ||||||
22465126-T-A | 20303240-T-A | DYZ19 | *** | |||||
13392133-T-G | 11236457-T-G | *** | ||||||
27484817-T-C | 25338670-T-C | P1_Y2 | *** | |||||
10001596-T-C | 10163987-T-C | *** | ||||||
14794569-C-A | 12682640-C-A | *** | ||||||
13283402-T-C | 11127726-T-C | *** | ||||||
28814553-T-G | 26668406-T-G | *** | ||||||
13734673-C-T | 11578997-C-T | *** | ||||||
13711749-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G | 11556073-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G | *** | ||||||
13694684-A-T | 11539008-A-T | *** | ||||||
13719733-T-TGAATG | 11564057-T-TGAATG | *** | ||||||
13706077-T-C | 11550401-T-C | *** | ||||||
13474800-G-A | 11319124-G-A | *** | ||||||
56830019-AT-A | *** | |||||||
17669731-ACACT-A | 15557851-ACACT-A | *** | ||||||
56715385-A-C | *** | |||||||
13396171-A-C | 11240495-A-C | *** | ||||||
13700765-A-AAT | 11545089-A-AAT | *** | ||||||
56834339-A-ACTCTTTT | *** | |||||||
13275860-T-TA | 11120184-T-TA | *** | ||||||
56827581-C-CGAGTCCATTCCATGT | *** | |||||||
13713034-C-A | 11557358-C-A | BY54432 | *** | |||||
2685834-A-G | 2817793-A-G | *** | ||||||
2685848-CTG-C | 2817807-CTG-C | *** | ||||||
2685851-T-C | 2817810-T-C | *** | ||||||
2688657-G-T | 2820616-G-T | *** | ||||||
2690854-T-G | 2822813-T-G | *** | ||||||
2690857-C-T | 2822816-C-T | *** | ||||||
2690858-A-G | 2822817-A-G | *** | ||||||
2690860-T-C | 2822819-T-C | *** | ||||||
2813509-T-A | 2945468-T-A | *** | ||||||
2899416-G-T | 3031375-G-T | *** | ||||||
3016665-G-C | 3148624-G-C | *** | ||||||
3016668-T-C | 3148627-T-C | *** | ||||||
3016669-G-A | 3148628-G-A | *** | ||||||
3016673-T-C | 3148632-T-C | *** | ||||||
3016675-T-C | 3148634-T-C | *** | ||||||
3256365-C-G | 3388324-C-G | FTB42154 | *** | |||||
3256368-C-T | 3388327-C-T | *** | ||||||
3259355-T-A | 3391314-T-A | *** | ||||||
3681402-A-C | 3813361-A-C | *** | ||||||
3723802-A-G | 3855761-A-G | *** | ||||||
3899871-A-T | 4031830-A-T | *** | ||||||
3922830-G-A | 4054789-G-A | *** | ||||||
3930604-T-TAC | 4062563-T-TAC | *** | ||||||
4583025-G-GTTT,GTTT | 4714984-G-GTTT,GTTT | 27×T | *** | |||||
5354731-TATATATATATATATACAC-T,T | 5486690-TATATATATATATATACAC-T,T | *** | ||||||
5412006-C-T | 5543965-C-T | *** | ||||||
5512898-G-T | 5644857-G-T | *** | ||||||
5551184-C-T | 5683143-C-T | *** | ||||||
5846265-A-G | 5978224-A-G | *** | ||||||
5998308-T-C | 6130267-T-C | *** | ||||||
6382129-T-C | 6514088-T-C | *** | ||||||
6403141-A-ATTCGTCGGTGTCGTGAAATACCGACGTATATGTTATT | 6535100-A-ATTCGTCGGTGTCGTGAAATACCGACGTATATGTTATT | *** | ||||||
6503710-C-G | 6635669-C-G | *** | ||||||
6595466-CGAGA-C | 6727425-CGAGA-C | *** | ||||||
6684205-C-CAAAAAAAAAA,CAAAAAAAAAA | 6816164-C-CAAAAAAAAAA,CAAAAAAAAAA | 31×A | *** | |||||
7344388-A-C | 7476347-A-C | *** | ||||||
7344393-A-T | 7476352-A-T | *** | ||||||
7344396-C-G | 7476355-C-G | *** | ||||||
7536135-G-T | 7668094-G-T | *** | ||||||
7573711-G-GCA | 7705670-G-GCA | *** | ||||||
7573712-TG-T | 7705671-TG-T | *** | ||||||
7573716-CA-C | 7705675-CA-C | *** | ||||||
7573726-C-T | 7705685-C-T | *** | ||||||
7573727-A-G | 7705686-A-G | *** | ||||||
7573733-C-T | 7705692-C-T | *** | ||||||
7573734-T-C | 7705693-T-C | *** | ||||||
7573742-C-T | 7705701-C-T | *** | ||||||
7633141-A-T | 7765100-A-T | *** | ||||||
7633151-T-A | 7765110-T-A | *** | ||||||
8056007-T-A | 8187966-T-A | *** | ||||||
8056016-A-C | 8187975-A-C | FT334217 | *** | |||||
8056025-C-T | 8187984-C-T | *** | ||||||
8056029-T-C | 8187988-T-C | *** | ||||||
8056032-T-C | 8187991-T-C | *** | ||||||
8175005-G-C | 8306964-G-C | *** | ||||||
8276693-C-T | 8408652-C-T | *** | ||||||
8276694-A-G | 8408653-A-G | *** | ||||||
8276705-C-T | 8408664-C-T | *** | ||||||
8473805-T-C | 8605764-T-C | *** | ||||||
8473812-T-C | 8605771-T-C | *** | ||||||
8827170-C-G | 8959129-C-G | *** | ||||||
8827171-T-G | 8959130-T-G | *** | ||||||
9053895-A-G | 9216286-A-G | *** | ||||||
9175646-G-T | 9338037-G-T | *** | ||||||
9178171-A-G | 9340562-A-G | *** | ||||||
9202174-T-C | 9364565-T-C | *** | ||||||
9210895-T-G | 9373286-T-G | *** | ||||||
9235088-G-A | 9397479-G-A | *** | ||||||
9296107-C-G | 9458498-C-G | *** | ||||||
9298923-G-T | 9461314-G-T | *** | ||||||
9301962-C-T | 9464353-C-T | *** | ||||||
9308316-C-T | 9470707-C-T | *** | ||||||
9327643-G-A | 9490034-G-A | *** | ||||||
9339966-C-T | 9502357-C-T | *** | ||||||
9364361-A-G | 9526752-A-G | *** | ||||||
9364451-C-T | 9526842-C-T | *** | ||||||
9389343-A-C | 9551734-A-C | *** | ||||||
9444656-T-A | 9607047-T-A | *** | ||||||
9472062-T-A | 9634453-T-A | *** | ||||||
9472066-T-A | 9634457-T-A | *** | ||||||
9497964-A-G | 9660355-A-G | *** | ||||||
9497969-G-A | 9660360-G-A | FT29449 | *** | |||||
9497974-G-A | 9660365-G-A | *** | ||||||
9497975-C-A | 9660366-C-A | *** | ||||||
9497984-T-C | 9660375-T-C | *** | ||||||
9497988-C-T | 9660379-C-T | *** | ||||||
9497990-T-C | 9660381-T-C | *** | ||||||
9497991-G-T | 9660382-G-T | *** | ||||||
9604549-T-C | 9766940-T-C | IR3_Prx | *** | |||||
9783272-A-G | 9945663-A-G | *** | ||||||
9924055-C-G | 10086446-C-G | *** | ||||||
9924069-G-C | 10086460-G-C | *** | ||||||
10001599-C-G | 10163990-C-G | *** | ||||||
10001600-C-T | 10163991-C-T | *** | ||||||
10082007-A-C | 10244398-A-C | *** | ||||||
10082013-A-G | 10244404-A-G | *** | ||||||
10632813-CTCCATA-C | *** | |||||||
13204548-A-G | 11048872-A-G | *** | ||||||
13252848-T-G | 11097172-T-G | *** | ||||||
13261922-G-A | 11106246-G-A | *** | ||||||
13263909-A-T | 11108233-A-T | *** | ||||||
13286187-C-T | 11130511-C-T | *** | ||||||
13286208-C-T | 11130532-C-T | *** | ||||||
13286214-C-A | 11130538-C-A | *** | ||||||
13336882-C-T | 11181206-C-T | *** | ||||||
13351185-T-TA | 11195509-T-TA | *** | ||||||
13351186-C-A,CA | 11195510-C-A,CA | 20×A | *** | |||||
13367455-C-A | 11211779-C-A | *** | ||||||
13367469-C-T | 11211793-C-T | *** | ||||||
13448865-A-ACTCCACTCCATTCCATTC | 11293189-A-ACTCCACTCCATTCCATTC | *** | ||||||
13449379-C-T | 11293703-C-T | *** | ||||||
13449380-C-T | 11293704-C-T | *** | ||||||
13449399-A-G | 11293723-A-G | *** | ||||||
13449947-C-CT | 11294271-C-CT | *** | ||||||
13455665-A-T | 11299989-A-T | *** | ||||||
13474414-A-C | 11318738-A-C | *** | ||||||
13474415-G-A | 11318739-G-A | *** | ||||||
13496890-T-C | 11341214-T-C | *** | ||||||
13497069-T-C | 11341393-T-C | *** | ||||||
13513376-A-G | 11357700-A-G | *** | ||||||
13514192-T-C | 11358516-T-C | *** | ||||||
13689653-C-A | 11533977-C-A | *** | ||||||
13692509-C-G | 11536833-C-G | *** | ||||||
13700768-C-A | 11545092-C-A | *** | ||||||
13704400-A-C | 11548724-A-C | *** | ||||||
13711732-TGGAATGGAATGGAATGGAACGGAATGGAATTAAATGGAAC-T | 11556056-TGGAATGGAATGGAATGGAACGGAATGGAATTAAATGGAAC-T | *** | ||||||
13712463-G-C | 11556787-G-C | *** | ||||||
13712678-G-T | 11557002-G-T | *** | ||||||
13717787-A-C | 11562111-A-C | *** | ||||||
13726446-T-A | 11570770-T-A | *** | ||||||
13730266-A-C | 11574590-A-C | *** | ||||||
13730673-G-A | 11574997-G-A | *** | ||||||
13734224-A-G | 11578548-A-G | *** | ||||||
13740101-T-A | 11584425-T-A | *** | ||||||
13748427-G-A | 11592751-G-A | *** | ||||||
13748532-G-C | 11592856-G-C | *** | ||||||
13890152-G-C | 11769446-G-C | *** | ||||||
13898954-T-C | 11778248-T-C | *** | ||||||
13898960-G-A | 11778254-G-A | *** | ||||||
14062010-C-CA,CAA | 11941304-C-CA,CAA | 34×A | *** | |||||
14290154-A-T | 12169448-A-T | *** | ||||||
14290156-A-C | 12169450-A-C | *** | ||||||
14290176-C-T | 12169470-C-T | *** | ||||||
14290181-A-G | 12169475-A-G | *** | ||||||
14290184-G-C | 12169478-G-C | *** | ||||||
14290186-T-C | 12169480-T-C | *** | ||||||
14290188-A-T | 12169482-A-T | *** | ||||||
14335609-T-G | 12214904-T-G | *** | ||||||
14335623-T-A | 12214918-T-A | *** | ||||||
14335630-C-T | 12214925-C-T | *** | ||||||
14335632-A-T | 12214927-A-T | *** | ||||||
14474486-A-G | 12353755-A-G | *** | ||||||
14474488-G-A | 12353757-G-A | *** | ||||||
14474491-G-T | 12353760-G-T | *** | ||||||
14474493-C-T | 12353762-C-T | *** | ||||||
14474505-G-C | 12353774-G-C | *** | ||||||
14490677-C-T | 12369946-C-T | *** | ||||||
14490678-A-C | 12369947-A-C | *** | ||||||
14490693-A-G | 12369962-A-G | *** | ||||||
14490715-A-G | 12369984-A-G | *** | ||||||
14490727-C-T | 12369996-C-T | *** | ||||||
14794555-A-G | 12682626-A-G | *** | ||||||
14794557-T-G | 12682628-T-G | *** | ||||||
14794559-C-T | 12682630-C-T | FT21638 | *** | |||||
14794566-A-G | 12682637-A-G | *** | ||||||
14794571-T-C | 12682642-T-C | *** | ||||||
14794573-T-C | 12682644-T-C | *** | ||||||
14794574-G-A | 12682645-G-A | *** | ||||||
14981978-G-T | 12870046-G-T | *** | ||||||
14981980-G-T | 12870048-G-T | *** | ||||||
15102641-A-C | 12990729-A-C | *** | ||||||
15102644-A-T | 12990732-A-T | *** | ||||||
15122000-T-G | 13010087-T-G | *** | ||||||
15260684-C-CTTTTTTTTTTT | 13148768-C-CTTTTTTTTTTT | 25×T | *** | |||||
15491941-G-GTATATA | 13380061-G-GTATATA | 19×TA | *** | |||||
15507813-C-A | 13395933-C-A | *** | ||||||
15507815-G-T | 13395935-G-T | *** | ||||||
15575043-G-A | 13463163-G-A | *** | ||||||
15575044-C-T | 13463164-C-T | *** | ||||||
15575070-T-C | 13463190-T-C | *** | ||||||
15760860-T-C | 13648980-T-C | *** | ||||||
15760869-A-C | 13648989-A-C | *** | ||||||
16215917-A-G | 14104037-A-G | *** | ||||||
16215926-G-A | 14104046-G-A | *** | ||||||
16642970-G-GAAATAATATAT | 14531090-G-GAAATAATATAT | *** | ||||||
16666079-A-AT,ATT | 14554199-A-AT,ATT | 25×T | *** | |||||
17102661-GC-G | 14990781-GC-G | *** | ||||||
17192585-T-C | 15080705-T-C | *** | ||||||
17192594-A-C | 15080714-A-C | *** | ||||||
17192598-A-G | 15080718-A-G | *** | ||||||
17192605-T-G | 15080725-T-G | *** | ||||||
17192606-C-G | 15080726-C-G | *** | ||||||
17192607-C-G | 15080727-C-G | *** | ||||||
17192616-A-C | 15080736-A-C | *** | ||||||
17192617-G-A | 15080737-G-A | *** | ||||||
17192625-A-T | 15080745-A-T | *** | ||||||
17192627-AAAAAAG-A | 15080747-AAAAAAG-A | *** | ||||||
17669743-T-A | 15557863-T-A | *** | ||||||
17669745-G-A | 15557865-G-A | *** | ||||||
17794253-G-T,T | 15682373-G-T,T | 10×TTCT | *** | |||||
17834836-T-C | 15722956-T-C | *** | ||||||
17835032-C-T | 15723152-C-T | *** | ||||||
18158344-G-T | 16046464-G-T | *** | ||||||
18158345-C-T | 16046465-C-T | *** | ||||||
18238968-G-C | 16127088-G-C | *** | ||||||
18238972-T-C | 16127092-T-C | *** | ||||||
18238977-T-C | 16127097-T-C | *** | ||||||
18238984-T-C | 16127104-T-C | *** | ||||||
18238992-A-C | 16127112-A-C | *** | ||||||
18402398-T-C | 16290518-T-C | P6_Gap | *** | |||||
18626582-C-CT,CTT | 16514702-C-CT,CTT | 25×T | *** | |||||
18702761-T-A | 16590881-T-A | *** | ||||||
18702763-G-A | 16590883-G-A | *** | ||||||
18797355-A-C | 16685475-A-C | *** | ||||||
19030687-CTGTTG-C | 16918807-CTGTTG-C | *** | ||||||
19030693-CA-C | 16918813-CA-C | *** | ||||||
19030698-GCAATTT-G | 16918818-GCAATTT-G | *** | ||||||
19126436-C-CAAAAAAAAAAAA,CAAAAAAAAAAAA | 17014556-C-CAAAAAAAAAAAA,CAAAAAAAAAAAA | 25×A | *** | |||||
19215271-C-T | 17103391-C-T | *** | ||||||
19215272-A-G | 17103392-A-G | *** | ||||||
19215280-A-C | 17103400-A-C | *** | ||||||
19215281-G-A | 17103401-G-A | *** | ||||||
19277831-T-C | 17165951-T-C | *** | ||||||
19277834-T-C | 17165954-T-C | *** | ||||||
19277841-A-G | 17165961-A-G | *** | ||||||
19277842-A-G | 17165962-A-G | *** | ||||||
19277853-C-T | 17165973-C-T | *** | ||||||
19277854-C-G | 17165974-C-G | *** | ||||||
19318206-TG-T | 17206326-TG-T | *** | ||||||
19501682-CA-C | 17389802-CA-C | *** | ||||||
19501686-T-A | 17389806-T-A | *** | ||||||
19501692-A-G | 17389812-A-G | *** | ||||||
21284210-TAAA-T | 19122324-TAAA-T | 13×A | *** | |||||
21464536-C-CAAA,CAAAAA | 19302650-C-CAAA,CAAAAA | 19×A | *** | |||||
21629739-T-C | 19467853-T-C | *** | ||||||
22017712-A-G | 19855826-A-G | *** | ||||||
22017713-T-C | 19855827-T-C | *** | ||||||
22238335-CTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGACACTCACCG-C | 20076449-CTAAGGTCTGCAGCTTCATTCTTGAAGTGAGCAAGACCATGAACCTGCCAGAAGGAAGAAACTCTGAACACATCTGAAGGAACAAACTCTGGACATAACACCTTTAAGTGCTATGACACTCACCG-C | DYZ19 | *** | |||||
22281738-G-T | 20119852-G-T | DYZ19 | *** | |||||
22299672-T-G | 20137786-T-G | DYZ19 | *** | |||||
22299675-A-C | 20137789-A-C | DYZ19 | *** | |||||
22302368-T-G | 20140482-T-G | BY216925 | DYZ19 | *** | ||||
22326248-C-T | 20164362-C-T | DYZ19 | *** | |||||
22429959-G-A | 20268073-G-A | DYZ19 | *** | |||||
22431251-T-C | 20269365-T-C | DYZ19 | *** | |||||
22431254-A-C | 20269368-A-C | DYZ19 | *** | |||||
22431263-G-A | 20269377-G-A | DYZ19 | *** | |||||
22431264-C-A | 20269378-C-A | DYZ19 | *** | |||||
22431271-C-A | 20269385-C-A | DYZ19 | *** | |||||
22438273-T-G | 20276387-T-G | DYZ19 | *** | |||||
22438280-T-G | 20276394-T-G | DYZ19 | *** | |||||
22441945-G-A | 20280059-G-A | DYZ19 | *** | |||||
22459086-A-G | 20297200-A-G | DYZ19 | *** | |||||
22620389-T-A | 20458503-T-A | *** | ||||||
22620395-G-A | 20458509-G-A | *** | ||||||
22620405-C-A | 20458519-C-A | *** | ||||||
22638247-G-A | 20476361-G-A | *** | ||||||
22641558-C-T | 20479672-C-T | *** | ||||||
22641565-A-C | 20479679-A-C | *** | ||||||
22914674-CAA-C,CAAA | 20752788-CAA-C,CAAA | 27×A | *** | |||||
23109515-C-T | 20947629-C-T | *** | ||||||
23194817-C-T | 21032931-C-T | 24×T | *** | |||||
23702350-A-G | 21540464-A-G | *** | ||||||
27506514-TC-T | 25360367-TC-T | P1_Y2 | *** | |||||
28700764-TACACACACACACACACACACACACAC-T,TACACACACACACACACACACACAC | 26554617-TACACACACACACACACACACACACAC-T,TACACACACACACACACACACACAC | 13×AC | *** | |||||
28790863-A-G | 26644716-A-G | *** | ||||||
28796127-T-C | 26649980-T-C | *** | ||||||
28806425-CG-C | 26660278-CG-C | *** | ||||||
28810087-T-C | 26663940-T-C | *** | ||||||
28818438-AGTCAT-A | 26672291-AGTCAT-A | *** | ||||||
56677897-TG-T | *** | |||||||
56678548-G-T | *** | |||||||
56686883-C-A | *** | |||||||
56686918-T-A | *** | |||||||
56689042-T-A | *** | |||||||
56691859-T-C | *** | |||||||
56692328-T-A | *** | |||||||
56692377-G-A | *** | |||||||
56706853-G-A | *** | |||||||
56732002-A-T | *** | |||||||
56756499-TCA-T | *** | |||||||
56756502-TGGGATGGC-T | *** | |||||||
56769565-G-A | *** | |||||||
56827939-C-CATTCCATTAAATTCGAATCCATTCCATTCCATTCCATTCT | *** | |||||||
56830332-CCATTCCATTCCAT-C | *** | |||||||
56834392-CCA-C | *** | |||||||
56834396-TCCTCTCCACTCCA-T | *** | |||||||
56861811-T-TTAAAAAA | *** | |||||||
56863510-T-G | *** | |||||||
56863512-C-T | *** | |||||||
56865486-A-T | *** | |||||||
56871655-A-ATATATATATATATATAT | *** | |||||||
56874259-A-C | *** | |||||||
56874260-G-A | *** | |||||||
34440-G-T | *** | |||||||
35145-G-C | *** |
In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.
For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.
The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.
The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.