McClendon

Kane-BY3: 85467

Tree Position

R-P312/S116 > Z46521 > Z46516 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19 > Z31644 > Z42772 > 8742535-G-GT > A431 > BY19161 > BY164509 > BY166389

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRKane-BY3
85467
hg19:Y:5404330-C-G hg38:Y:5536289-C-G FT78428 +
hg19:Y:5851929-C-A hg38:Y:5983888-C-A FT78562 +
hg38:Y:10779695-GTTCCATTCCACTCCA-G +
hg19:Y:16020951-C-T hg38:Y:13909071-C-T FT79375 YY+
hg19:Y:18389991-C-T hg38:Y:16278111-C-T FT79691 P6_Gap +
hg19:Y:23189807-G-A hg38:Y:21027921-G-A BY168692 Y+
hg19:Y:23672293-T-TTCCC hg38:Y:21510407-T-TTCCC +
hg19:Y:6445011-C-G hg38:Y:6576970-C-G *
hg19:Y:13243603-T-C hg38:Y:11087927-T-C *
hg19:Y:13244925-T-G hg38:Y:11089249-T-G *
hg19:Y:59008525-G-A hg38:Y:56862378-G-A *
hg19:Y:59011484-C-T hg38:Y:56865337-C-T *
hg19:Y:59014005-T-TCC hg38:Y:56867858-T-TCC *
hg19:Y:59014042-T-A hg38:Y:56867895-T-A *
hg19:Y:59014100-C-T hg38:Y:56867953-C-T *
hg19:Y:59019568-T-A hg38:Y:56873421-T-A *
hg19:Y:59030061-A-G hg38:Y:56883914-A-G *
hg19:Y:13489398-G-T hg38:Y:11333722-G-T *
hg19:Y:59010290-T-C hg38:Y:56864143-T-C *
hg19:Y:59010308-C-T hg38:Y:56864161-C-T *
hg38:Y:56846565-C-G *
hg19:Y:5828966-AACACACAC-A,AACAC hg38:Y:5960925-AACACACAC-A,AACAC 22×AC*
hg19:Y:13489372-G-T hg38:Y:11333696-G-T *
hg19:Y:13292982-G-A hg38:Y:11137306-G-A *
hg19:Y:28812653-G-T hg38:Y:26666506-G-T BY155831 *
hg19:Y:13708698-T-A hg38:Y:11553022-T-A DYZ17 *
hg19:Y:16679099-ATTTT-A,ATTT hg38:Y:14567219-ATTTT-A,ATTT 25×T*
hg19:Y:16344458-GCTTCTT-G,GCTT hg38:Y:14232578-GCTTCTT-G,GCTT 12×CTT*
hg19:Y:14747961-CTTT-C,CTTTT hg38:Y:12636030-CTTT-C,CTTTT 22×T*
hg38:Y:56856122-A-G *
hg19:Y:7135386-ATTTTT-A,ATTTT hg38:Y:7267345-ATTTTT-A,ATTTT 22×T*
hg19:Y:13701864-G-T hg38:Y:11546188-G-T DYZ17 *
hg19:Y:21468745-AT-A,ATT hg38:Y:19306859-AT-A,ATT 25×T*
hg38:Y:56856068-G-T *
hg38:Y:56883935-G-T *
hg38:Y:56883938-G-A *
hg19:Y:13707392-ACCATT-A hg38:Y:11551716-ACCATT-A DYZ17 *
hg19:Y:13707399-A-T hg38:Y:11551723-A-T DYZ17 *
hg19:Y:13487823-C-G hg38:Y:11332147-C-G *
hg38:Y:56826007-G-GCA,T *
hg19:Y:13462250-A-AAC hg38:Y:11306574-A-AAC *
hg19:Y:17313273-CTGTAT-C,C hg38:Y:15201393-CTGTAT-C,C 11×TGTAT*
hg19:Y:13292884-T-C hg38:Y:11137208-T-C *
hg19:Y:13448753-C-T hg38:Y:11293077-C-T *
hg38:Y:56877854-CAAAAA-C,CAAAA 18×A*
hg38:Y:56834380-T-TTCCATTCCATTCCAC,TTCCGTTCAATTCCTC *
hg19:Y:23194817-CTTTTT-C,CTTTT hg38:Y:21032931-CTTTTT-C,CTTTT 24×T*
hg19:Y:13489617-C-A,CCCGTCCT hg38:Y:11333941-C-A,CCCGTCCT *
hg38:Y:56882843-G-A *
hg38:Y:56883916-A-G *
hg19:Y:13730519-G-A hg38:Y:11574843-G-A DYZ17 *
hg19:Y:5496242-C-A hg38:Y:5628201-C-A *
hg19:Y:8648172-GATAT-G,GATATATAT hg38:Y:8780131-GATAT-G,GATATATAT 14×AT*
hg19:Y:9227801-A-T,T hg38:Y:9390192-A-T,T *
hg19:Y:13253275-GA-G hg38:Y:11097599-GA-G *
hg19:Y:13462285-T-TCCTCTTCGTCTCTCTGGC hg38:Y:11306609-T-TCCTCTTCGTCTCTCTGGC *
hg19:Y:13462287-A-ACACCAGCAACGTCACCACTCCCACCTCCCCCACCACACCACCCCTTGGCTGCAGGCCTCGACTCCACCCTTCC hg38:Y:11306611-A-ACACCAGCAACGTCACCACTCCCACCTCCCCCACCACACCACCCCTTGGCTGCAGGCCTCGACTCCACCCTTCC *
hg19:Y:13476609-T-C,G hg38:Y:11320933-T-C,G *
hg19:Y:13487845-G-C hg38:Y:11332169-G-C *
hg19:Y:13489723-A-ATCCCTCCAGTGTCTCACCTCCTCTGCGCCTCCCCACCACAGACGCCGGCCCACCCCGCCGGCTG hg38:Y:11334047-A-ATCCCTCCAGTGTCTCACCTCCTCTGCGCCTCCCCACCACAGACGCCGGCCCACCCCGCCGGCTG *
hg19:Y:13701898-C-A hg38:Y:11546222-C-A DYZ17 *
hg19:Y:16836267-G-GT,GTTT hg38:Y:14724387-G-GT,GTTT 11×T*
hg19:Y:16913422-CAAAAA-C,CAAA hg38:Y:14801542-CAAAAA-C,CAAA 21×A*
hg19:Y:17459485-CAAAA-C,CAAAAA hg38:Y:15347605-CAAAA-C,CAAAAA 25×A*
hg19:Y:18615932-CTTTTT-C,CTTTT hg38:Y:16504052-CTTTTT-C,CTTTT 27×T*
hg19:Y:18685627-C-CTG,CTG hg38:Y:16573747-C-CTG,CTG 17×TG*
hg19:Y:19126436-C-CAAAAAAAAAAA,CAAAAAAAAAAAAA hg38:Y:17014556-C-CAAAAAAAAAAA,CAAAAAAAAAAAAA 25×A*
hg19:Y:22048230-CA-C,CAA hg38:Y:19886344-CA-C,CAA 15×A*
hg19:Y:22319927-C-A hg38:Y:20158041-C-A DYZ19 *
hg38:Y:56831048-A-AAGAGTCATGTAACTCTTGTCTAGGCTCTGCTTACAGGGGGTATTTTGACATATCTCTGCACTGATCACCTAAGTGATGTAACAC *
hg38:Y:56846556-G-A *
hg38:Y:56846569-T-A *
hg19:Y:22816366-CA-C hg38:Y:20654480-CA-C 29×A**
hg19:Y:17074637-G-GTT hg38:Y:14962757-G-GTT 34×T**
hg19:Y:5900371-A-G hg38:Y:6032330-A-G **
hg19:Y:22272433-G-T hg38:Y:20110547-G-T BY158448 DYZ19 **
hg19:Y:28818194-GTGGAATGGAA-G hg38:Y:26672047-GTGGAATGGAA-G 5×TGGAA**
hg19:Y:13469858-G-T hg38:Y:11314182-G-T **
hg19:Y:3081812-C-CA hg38:Y:3213771-C-CA 33×A**
hg38:Y:56842340-CT-C **
hg38:Y:56710824-A-G **
hg19:Y:22459694-T-A hg38:Y:20297808-T-A DYZ19 **
hg19:Y:22459700-C-A hg38:Y:20297814-C-A DYZ19 **
hg19:Y:22459713-G-A hg38:Y:20297827-G-A DYZ19 **
hg19:Y:4571079-A-AAAG hg38:Y:4703038-A-AAAG 6×AAAG**
hg19:Y:13963824-A-ATTTTTTTTTT hg38:Y:11843118-A-ATTTTTTTTTT 49×T**
hg19:Y:15629095-A-G hg38:Y:13517215-A-G **
hg19:Y:15629096-T-C hg38:Y:13517216-T-C **
hg19:Y:18304219-T-G hg38:Y:16192339-T-G P6_Prx **
hg19:Y:18304225-A-G hg38:Y:16192345-A-G P6_Prx **
hg19:Y:22272446-C-A hg38:Y:20110560-C-A BY202254 DYZ19 **
hg19:Y:22983553-C-A hg38:Y:20821667-C-A **
hg38:Y:56756802-T-G **
hg38:Y:56756807-TCA-T **
hg38:Y:56756810-G-GTA **
hg19:Y:25395702-CTT-C hg38:Y:23249555-CTT-C P2_r2 20×T***
hg19:Y:58827219-T-C hg38:Y:56763652-A-G ***
hg19:Y:18328770-G-T hg38:Y:16216890-G-T P6_Prx ***
hg19:Y:13351256-A-G hg38:Y:11195580-A-G ***
hg19:Y:4358682-CCA-C hg38:Y:4490641-CCA-C ***
hg19:Y:5548849-T-G hg38:Y:5680808-T-G ***
hg19:Y:13252473-C-T hg38:Y:11096797-C-T ***
hg19:Y:14198038-GCA-G hg38:Y:12077332-GCA-G 8×CA***
hg19:Y:22936288-C-CTTTTTT hg38:Y:20774402-C-CTTTTTT 25×T***
hg19:Y:5591787-A-C hg38:Y:5723746-A-C ***
hg19:Y:9105269-TCA-T hg38:Y:9267660-TCA-T ***
hg19:Y:13351239-A-G hg38:Y:11195563-A-G ***
hg19:Y:13470776-GC-G hg38:Y:11315100-GC-G ***
hg19:Y:59016426-G-A hg38:Y:56870279-G-A ***
hg19:Y:24562932-CT-C hg38:Y:22416785-CT-C P3_t2 11×T***
hg19:Y:4498179-A-ATTTTTT hg38:Y:4630138-A-ATTTTTT 23×T***
hg19:Y:5905890-CAAA-C hg38:Y:6037849-CAAA-C 27×A***
hg19:Y:13694462-G-A hg38:Y:11538786-G-A DYZ17 ***
hg19:Y:16458196-A-C hg38:Y:14346316-A-C ***
hg19:Y:13477249-A-G hg38:Y:11321573-A-G ***
hg19:Y:13474426-T-G hg38:Y:11318750-T-G ***
hg38:Y:10884536-A-C ***
hg19:Y:17561990-GT-G,GTT hg38:Y:15450110-GT-G,GTT 17×T***
hg19:Y:13463888-G-A hg38:Y:11308212-G-A ***
hg19:Y:19079234-CTTTTT-C hg38:Y:16967354-CTTTTT-C 19×T***
hg19:Y:28818962-G-A hg38:Y:26672815-G-A ***
hg38:Y:10884537-C-T ***
hg38:Y:56842300-G-A ***
hg38:Y:56862566-A-C ***
hg19:Y:5769175-C-CT hg38:Y:5901134-C-CT 17×T***
hg19:Y:9124294-C-G hg38:Y:9286685-C-G ***
hg19:Y:13469875-C-A hg38:Y:11314199-C-A ***
hg19:Y:13242900-A-T hg38:Y:11087224-A-T ***
hg19:Y:5227124-C-A hg38:Y:5359083-C-A ***
hg19:Y:23196176-GT-G,GTT hg38:Y:21034290-GT-G,GTT 20×T***
hg19:Y:3838601-CTTTT-C hg38:Y:3970560-CTTTT-C 31×T***
hg19:Y:16778333-C-CT hg38:Y:14666453-C-CT 10×T***
hg38:Y:56850191-G-A ***
hg38:Y:56864628-A-G ***
hg19:Y:13256416-C-T hg38:Y:11100740-C-T ***
hg19:Y:13435523-A-G hg38:Y:11279847-A-G ***
hg19:Y:13474494-T-A hg38:Y:11318818-T-A ***
hg19:Y:26631899-A-AT hg38:Y:24485752-A-AT P1_g2 20×T***
hg19:Y:22480570-A-G hg38:Y:20318684-A-G DYZ19 ***
hg19:Y:13483368-C-T hg38:Y:11327692-C-T ***
hg19:Y:13468286-G-A hg38:Y:11312610-G-A ***
hg19:Y:22272416-A-C hg38:Y:20110530-A-C BY215377 DYZ19 ***
hg19:Y:13543452-G-A hg38:Y:11387776-G-A ***
hg19:Y:18626582-CT-C,CTT hg38:Y:16514702-CT-C,CTT 25×T***
hg19:Y:4346565-AT-A,ATT hg38:Y:4478524-AT-A,ATT 22×T***
hg19:Y:21919404-CT-C,CTT hg38:Y:19757518-CT-C,CTT 16×T***
hg19:Y:28565722-TTA-T,TTATA hg38:Y:26419575-TTA-T,TTATA 13×TA***
hg19:Y:4184526-T-A hg38:Y:4316485-T-A ***
hg19:Y:5453148-T-G hg38:Y:5585107-T-G ***
hg19:Y:13607590-C-T hg38:Y:11451914-C-T BY166028FT354037 ***
hg19:Y:4373263-C-T hg38:Y:4505222-C-T ***
hg19:Y:27028342-C-A hg38:Y:24882195-C-A P1_r4 ***
hg19:Y:16458192-T-C hg38:Y:14346312-T-C ***
hg19:Y:14158602-T-TTA hg38:Y:12037896-T-TTA ***
hg19:Y:5338087-ATTTT-A hg38:Y:5470046-ATTTT-A 16×T***
hg19:Y:7461754-GTT-G,GTTTT hg38:Y:7593713-GTT-G,GTTTT IR1_L 23×T***
hg19:Y:16205796-C-CTTT hg38:Y:14093916-C-CTTT 21×T***
hg19:Y:13711749-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G hg38:Y:11556073-GAACGGAATGGAATTAAATGGAACGGAATGGAATGGCATGGAATGGAATGGCATGGCATGGAATGGAATGGAATGGAATGGAATGA-G DYZ17 ***
hg19:Y:14768710-T-C hg38:Y:12656779-T-C ***
hg19:Y:13487883-G-C hg38:Y:11332207-G-C ***
hg19:Y:13487891-G-A hg38:Y:11332215-G-A ***
hg38:Y:56873004-G-T ***
hg19:Y:5783827-A-G hg38:Y:5915786-A-G FT211687 ***
hg19:Y:13469896-T-TCC hg38:Y:11314220-T-TCC ***
hg19:Y:13256436-TG-T hg38:Y:11100760-TG-T ***
hg19:Y:7348570-C-CT hg38:Y:7480529-C-CT ***
hg19:Y:7348571-C-T hg38:Y:7480530-C-T ***
hg19:Y:7348574-CA-C hg38:Y:7480533-CA-C ***
hg19:Y:7348577-A-G hg38:Y:7480536-A-G ***
hg19:Y:13468224-G-C hg38:Y:11312548-G-C ***
hg19:Y:14764914-ATT-A,ATTT hg38:Y:12652983-ATT-A,ATTT 23×T***
hg19:Y:25963867-C-CTTT,CTTT hg38:Y:23817720-C-CTTT,CTTT P1_Y1 34×T***
hg38:Y:56685584-T-C ***
hg38:Y:56685614-T-C ***
hg19:Y:13489543-C-T hg38:Y:11333867-C-T ***
hg19:Y:13477271-C-A hg38:Y:11321595-C-A ***
hg19:Y:13734796-G-A hg38:Y:11579120-G-A DYZ17 ***
hg19:Y:13463900-G-C hg38:Y:11308224-G-C ***
hg19:Y:13469900-AAC-A hg38:Y:11314224-AAC-A ***
hg19:Y:6948092-G-GTTTTTTTTTTTTT hg38:Y:7080051-G-GTTTTTTTTTTTTT 31×T***
hg19:Y:25966803-A-C hg38:Y:23820656-A-C P1_Y1 ***
hg19:Y:9839545-C-CAAA hg38:Y:10001936-C-CAAA 23×A***
hg19:Y:13489963-A-G hg38:Y:11334287-A-G ***
hg19:Y:13734773-G-T hg38:Y:11579097-G-T DYZ17 ***
hg19:Y:13470586-G-C hg38:Y:11314910-G-C ***
hg19:Y:22272368-A-C hg38:Y:20110482-A-C DYZ19 ***
hg19:Y:5523917-CT-C,CTT hg38:Y:5655876-CT-C,CTT 24×T***
hg19:Y:7100954-CT-C,CTT hg38:Y:7232913-CT-C,CTT 32×T***
hg19:Y:13470598-TG-T hg38:Y:11314922-TG-T ***
hg19:Y:4163459-A-G hg38:Y:4295418-A-G ***
hg19:Y:4184536-T-A hg38:Y:4316495-T-A ***
hg19:Y:4191317-C-A hg38:Y:4323276-C-A ***
hg19:Y:4200055-C-CA,CAA hg38:Y:4332014-C-CA,CAA 23×A***
hg19:Y:5270693-CTT-C,CTTTT hg38:Y:5402652-CTT-C,CTTTT 22×T***
hg19:Y:5674090-T-C hg38:Y:5806049-T-C ***
hg19:Y:6369563-TTTG-T hg38:Y:6501522-TTTG-T 5×TTG***
hg19:Y:6434919-AG-A hg38:Y:6566878-AG-A ***
hg19:Y:6434922-A-T hg38:Y:6566881-A-T ***
hg19:Y:7076612-CA-C,CAAAAAAAA hg38:Y:7208571-CA-C,CAAAAAAAA 29×A***
hg19:Y:7179734-GT-G,TT hg38:Y:7311693-GT-G,TT 25×T***
hg19:Y:7520781-AT-A hg38:Y:7652740-AT-A 8×T***
hg19:Y:7998489-G-T hg38:Y:8130448-G-T ***
hg19:Y:9352635-G-C hg38:Y:9515026-G-C ***
hg19:Y:9959850-A-ATAG hg38:Y:10122241-A-ATAG ***
hg38:Y:10677550-T-A ***
hg38:Y:10801836-C-A ***
hg19:Y:13256439-TTTTTG-T hg38:Y:11100763-TTTTTG-T ***
hg19:Y:13351252-C-T hg38:Y:11195576-C-T ***
hg19:Y:13452144-A-AC hg38:Y:11296468-A-AC ***
hg19:Y:13463835-CCGTT-C hg38:Y:11308159-CCGTT-C ***
hg19:Y:13463840-T-TGGGC hg38:Y:11308164-T-TGGGC ***
hg19:Y:13463854-C-T hg38:Y:11308178-C-T ***
hg19:Y:13468335-AAAGCCCCATCACCT-A hg38:Y:11312659-AAAGCCCCATCACCT-A ***
hg19:Y:13468351-GATGATCAGTGCAGAGTTATGTCACAAAGTCCCGTTAGGCAGATCCTGGAGAAGA-G hg38:Y:11312675-GATGATCAGTGCAGAGTTATGTCACAAAGTCCCGTTAGGCAGATCCTGGAGAAGA-G ***
hg19:Y:13470779-T-A hg38:Y:11315103-T-A ***
hg19:Y:13476675-AAG-A hg38:Y:11320999-AAG-A ***
hg19:Y:13476679-C-CCCGG hg38:Y:11321003-C-CCCGG ***
hg19:Y:13487752-C-G hg38:Y:11332076-C-G ***
hg19:Y:13487893-G-T hg38:Y:11332217-G-T ***
hg19:Y:13489326-T-C hg38:Y:11333650-T-C ***
hg19:Y:13489431-G-T hg38:Y:11333755-G-T ***
hg19:Y:13638511-G-T hg38:Y:11482835-G-T ***
hg19:Y:13842726-T-A hg38:Y:11722020-T-A DYZ17 ***
hg19:Y:13842728-G-C hg38:Y:11722022-G-C DYZ17 ***
hg19:Y:14075599-G-GAAAAAAAAAAAAAAAAAAA hg38:Y:11954893-G-GAAAAAAAAAAAAAAAAAAA 38×A***
hg38:Y:12450522-C-CTTTT,CTTTT 41×T***
hg19:Y:15573796-G-GGTGGCTC hg38:Y:13461916-G-GGTGGCTC ***
hg19:Y:15573797-A-AT hg38:Y:13461917-A-AT ***
hg19:Y:15580333-A-T hg38:Y:13468453-A-T ***
hg19:Y:16458187-T-TG hg38:Y:14346307-T-TG ***
hg19:Y:17592345-CT-C,CTTT hg38:Y:15480465-CT-C,CTTT 24×T***
hg19:Y:17678621-CTT-C,CTTT hg38:Y:15566741-CTT-C,CTTT 26×T***
hg19:Y:17731014-C-CAAAAAAAAA,CAAAAAAAAA hg38:Y:15619134-C-CAAAAAAAAA,CAAAAAAAAA 35×A***
hg19:Y:17946919-GT-G,GTTTT hg38:Y:15835039-GT-G,GTTTT 24×T***
hg19:Y:18328774-C-A hg38:Y:16216894-C-A P6_Prx ***
hg19:Y:18354384-A-G hg38:Y:16242504-A-G P6_Prx ***
hg19:Y:19189430-CTTTT-C hg38:Y:17077550-CTTTT-C 35×T***
hg19:Y:19393098-CTTT-C,CTTTT hg38:Y:17281218-CTTT-C,CTTTT 30×T***
hg19:Y:21510712-T-A hg38:Y:19348826-T-A ***
hg19:Y:21827606-CA-C,C hg38:Y:19665720-CA-C,C 21×A***
hg19:Y:22085724-G-T hg38:Y:19923838-G-T ***
hg19:Y:22185855-CTTT-C,CTT hg38:Y:20023969-CTTT-C,CTT 25×T***
hg19:Y:22471695-A-G hg38:Y:20309809-A-G DYZ19 ***
hg19:Y:22480566-T-A hg38:Y:20318680-T-A BY224462 DYZ19 ***
hg19:Y:22480577-G-C hg38:Y:20318691-G-C FT460404 DYZ19 ***
hg19:Y:22509504-A-C hg38:Y:20347618-A-C DYZ19 ***
hg19:Y:23041198-G-GAAA,GAAA hg38:Y:20879312-G-GAAA,GAAA 34×A***
hg19:Y:23070772-C-CTTTTTTTTT hg38:Y:20908886-C-CTTTTTTTTT 29×T***
hg19:Y:23352217-A-G hg38:Y:21190331-A-G ***
hg19:Y:27028348-G-T hg38:Y:24882201-G-T P1_r4 ***
hg19:Y:27028355-T-A hg38:Y:24882208-T-A P1_r4 ***
hg38:Y:56685530-G-T ***
hg38:Y:56707006-A-T ***
hg38:Y:56855079-G-C ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 854671528584591834548149623
Used in age calculations1528584591834548149623
Counts of SNPs21
Variant counts last updated 2025-09-28 02:38:27.


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