Big Tree: Person Data

Tree Position

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19)	POS-REF-ALT (hg38)	Names	Region	McDonald BED	combBED	STR	Kane-BY3 MI44140
19393098-C-CTTTTT	17281218-C-CTTTTT					30×T	+
7723048-T-A	7855007-T-A			Y	Y		+
	12450522-C-CTT					41×T	+
18361487-A-G	16249607-A-G		P6_Prx				+
21224779-A-ATTT	19062893-A-ATTT					19×T	+
22253420-G-T	20091534-G-T	BY48470	DYZ19				+
22345975-A-T	20184089-A-T		DYZ19				+
22345983-C-A	20184097-C-A		DYZ19				+
22540577-T-C	20378691-T-C			Y			+
24446840-TAAAAAAAA-T	22300693-TAAAAAAAA-T					13×A	+
17576243-G-GAA	15464363-G-GAA					16×A	*
3011967-T-TGG	3143926-T-TGG						*
16712138-ATG-A	14600258-ATG-A						*
58997811-A-G	56851664-A-G						*
14415573-A-T	12294870-A-T	BY43345		Y	Y		*
5753522-CT-C	5885481-CT-C					10×T	*
5986595-G-GT	6118554-G-GT					28×T	*
16573660-C-CA	14461780-C-CA					10×A	*
5818054-C-T	5950013-C-T						*
14099292-G-GA	11978586-G-GA					9×A	*
5007689-CAAA-C	5139648-CAAA-C					22×A	*
15733879-CAAA-C	13621999-CAAA-C					25×A	*
22149183-AT-A	19987297-AT-A					9×T	*
5621263-A-AGT	5753222-A-AGT					10×GT	*
19449428-GA-G,GAA	17337548-GA-G,GAA					23×A	*
2892542-AT-A,ATT	3024501-AT-A,ATT					18×T	*
9516751-CTTT-C	9679142-CTTT-C					14×T	*
14949771-TAA-T	12837845-TAA-T					13×A	*
8468065-CAAAA-C,CAAAAA	8600024-CAAAA-C,CAAAAA					24×A	*
18036076-A-AT	15924196-A-AT					10×T	*
27617573-G-GA	25471426-G-GA		P1_Y2			14×A	*
15020769-AT-A	12908858-AT-A					9×T	*
16301319-GA-G	14189439-GA-G					10×A	*
23261617-C-T	21099731-C-T	FTB23505		Y	Y		*
3651546-A-AT	3783505-A-AT					9×T	*
13249549-A-C	11093873-A-C						*
7287808-CAT-C	7419767-CAT-C						*
15262718-C-A	13150802-C-A			Y	Y		*
21149610-G-T	18987724-G-T			Y	Y		*
8152096-AT-A,ATT	8284055-AT-A,ATT					12×T	*
19518802-T-A	17406922-T-A			Y	Y		*
21446217-CTTTTT-C	19284331-CTTTTT-C					23×T	*
	10973996-C-A						*
13214289-ATTTT-A	11058613-ATTTT-A					19×T	*
2752413-G-T	2884372-G-T			Y	Y		*
20826397-CTTTTT-C,CTTTT	18664511-CTTTTT-C,CTTTT		P4_Gap			17×T	*
18928069-A-C	16816189-A-C			Y	Y		*
14819674-CT-C,CTT	12707741-CT-C,CTT					15×T	*
15468678-C-CAAA	13356798-C-CAAA					23×A	*
13839756-TAATGGAATGG-T,TAATGG	11719050-TAATGGAATGG-T,TAATGG					11×AATGG	*
8379414-G-T	8511373-G-T	FGC64052		Y	Y		*
15262458-CAAAA-C	13150542-CAAAA-C					30×A	*
13479035-A-T	11323359-A-T						*
16768601-CTTT-C,CTT	14656721-CTTT-C,CTT					17×T	*
	11037977-C-A						*
	11037976-T-A						*
23471058-G-T	21309172-G-T			Y	Y		*
18392975-C-CCTTT,CCTTTCTTT	16281095-C-CCTTT,CCTTTCTTT		P6_Gap			15×CTTT	*
18085422-G-A	15973542-G-A			Y	Y		*
6089802-G-T	6221761-G-T						*
15271067-C-A	13159156-C-A			Y	Y		*
18093958-G-T	15982078-G-T			Y			*
5760628-G-C	5892587-G-C						*
14562365-G-T	12450565-G-T			Y	Y		*
23435682-C-CTT	21273796-C-CTT					21×T	*
13484882-A-T	11329206-A-T						*
13484890-T-G	11329214-T-G						*
17822240-GAA-G	15710360-GAA-G					12×A	*
23543186-G-GT	21381300-G-GT					9×T	*
4686573-CAAA-C	4818532-CAAA-C					15×A	*
13489601-A-C	11333925-A-C						*
21261826-T-TAA	19099940-T-TAA					26×A	*
8025155-CA-C,CAA	8157114-CA-C,CAA					14×A	*
19333253-G-T	17221373-G-T			Y	Y		*
22467258-CAG-C	20305372-CAG-C		DYZ19				*
21730548-ATTT-A,ATT	19568662-ATTT-A,ATT					23×T	*
19113763-C-A	17001883-C-A			Y	Y		*
23380570-CA-C,CAA	21218684-CA-C,CAA					13×A	*
17419439-ATT-A,ATTT	15307559-ATT-A,ATTT					25×T	*
13484887-T-C	11329211-T-C						*
13484909-G-A	11329233-G-A						*
21946463-GAAA-G,GAAAA	19784577-GAAA-G,GAAAA					15×A	*
23380584-G-T	21218698-G-T			Y	Y		*
8036188-CA-C,CAA	8168147-CA-C,CAA					12×A	*
20516443-T-TAC,TACAC	18354557-T-TAC,TACAC		P5_Dst			18×AC	*
5612184-C-A	5744143-C-A	FGC69301					*
16897643-CA-C,CAA	14785763-CA-C,CAA					23×A	*
22580068-CTT-C,CT	20418182-CTT-C,CT					19×T	*
3914660-AT-A	4046619-AT-A					10×T	*
5227087-CAAAA-C,CAAAAA	5359046-CAAAA-C,CAAAAA					21×A	*
18760242-TTCTCTC-T,TTC	16648362-TTCTCTC-T,TTC					27×TC	*
14914672-CTT-C,CT	12802739-CTT-C,CT					17×T	*
	56836402-C-T						*
3711637-C-T	3843596-C-T						*
5492375-CT-C	5624334-CT-C					9×T	*
3746224-C-CAA	3878183-C-CAA					13×A	*
3836918-G-GAA	3968877-G-GAA					9×A	*
	13045947-CAAAA-C,CAAAAA					20×A	*
16182699-AT-A	14070819-AT-A					10×T	*
15771798-T-G	13659918-T-G			Y	Y		*
5241676-G-T	5373635-G-T						*
26499952-A-ATT	24353805-A-ATT		P1_Y1			20×T	*
8030030-TAAA-T,TAA	8161989-TAAA-T,TAA					26×A	*
21969764-T-A	19807878-T-A			Y	Y		*
13362062-T-TAA	11206386-T-TAA					14×A	*
4412544-T-TA	4544503-T-TA					9×A	*
16531083-CAAAAA-C,CAAAA	14419203-CAAAAA-C,CAAAA					24×A	*
19409391-CA-C,CAA	17297511-CA-C,CAA					22×A	*
21411718-CAAAAAAAA-C	19249832-CAAAAAAAA-C					31×A	*
13965269-CAA-C,CA	11844563-CAA-C,CA					21×A	*
	56827884-G-A						*
16666079-ATT-A,AT	14554199-ATT-A,AT					25×T	*
4262884-AT-A	4394843-AT-A					10×T	*
13458903-A-T	11303227-A-T						*
21738413-T-C	19576527-T-C			Y	Y		*
5264019-G-C	5395978-G-C						*
7363157-TAAA-T,TAA	7495116-TAAA-T,TAA					18×A	*
15260684-CT-C,CTT	13148768-CT-C,CTT					25×T	*
6583818-A-G	6715777-A-G						*
3640535-C-CTTT,CTTT	3772494-C-CTTT,CTTT						*
3640536-C-CT,CT	3772495-C-CT,CT						*
15507783-GTTT-G,GTT	13395903-GTTT-G,GTT					25×T	*
17961303-TA-T	15849423-TA-T					8×A	*
23416511-CT-C,CTT	21254625-CT-C,CTT					16×T	*
3800092-AACACAC-A,AAC	3932051-AACACAC-A,AAC					17×AC	*
9507982-C-CTTTTTT	9670373-C-CTTTTTT					34×T	*
	56826006-AGTTCCTTCCATTCGAG-A,ATTGTTCCTTCCATTCGAG						*
6089803-C-A	6221762-C-A						*
22538506-C-T	20376620-C-T			Y			*
28545880-CA-C,CAA	26399733-CA-C,CAA					20×A	*
2788533-T-A	2920492-T-A			Y			*
2795555-A-AT	2927514-A-AT						*
2822818-A-G	2954777-A-G			Y	Y		*
2861534-CAAA-C,CAAAA	2993493-CAAA-C,CAAAA					25×A	*
2992436-A-ATTT	3124395-A-ATTT					15×T	*
3142487-CT-C	3274446-CT-C						*
	3306335-T-						*
3194380-ATT-A	3326339-ATT-A					9×T	*
3204392-A-G	3336351-A-G						*
3394329-C-A	3526288-C-A						*
3622966-T-TTG,TTGTGTGTG	3754925-T-TTG,TTGTGTGTG					17×TG	*
3747211-A-G	3879170-A-G						*
3846245-G-T	3978204-G-T						*
3910257-G-T	4042216-G-T						*
3979603-A-C	4111562-A-C						*
4056690-T-TA,TAA	4188649-T-TA,TAA					10×A	*
4158594-C-CTT	4290553-C-CTT						*
4254663-T-TTA	4386622-T-TTA						*
4275437-C-CA,CAA	4407396-C-CA,CAA					19×A	*
4282600-C-T	4414559-C-T						*
4413777-A-G	4545736-A-G						*
4485531-A-C	4617490-A-C						*
4521304-A-G	4653263-A-G						*
4547790-T-A	4679749-T-A						*
4547791-A-T	4679750-A-T						*
4893725-A-AT	5025684-A-AT					9×T	*
5028019-T-C	5159978-T-C						*
5178062-CAA-C,CAAAA	5310021-CAA-C,CAAAA					20×A	*
5252389-ACATC-A	5384348-ACATC-A						*
5252395-A-AGATG	5384354-A-AGATG						*
5252404-T-TC	5384363-T-TC						*
5405300-GTTT-G	5537259-GTTT-G					17×T	*
5653454-G-A	5785413-G-A						*
5691473-TA-T	5823432-TA-T						*
5789833-ATAAAGT-A	5921792-ATAAAGT-A						*
5828781-T-A	5960740-T-A						*
5952568-A-T	6084527-A-T						*
6405596-ATATAT-A	6537555-ATATAT-A						*
6419045-CATGT-C,C	6551004-CATGT-C,C						*
6698842-TTTG-T	6830801-TTTG-T						*
6939960-G-C	7071919-G-C			Y	Y		*
6939969-C-G	7071928-C-G			Y	Y		*
6939978-G-C	7071937-G-C			Y	Y		*
7136858-T-A	7268817-T-A			Y	Y		*
7136859-T-TACAC	7268818-T-TACAC						*
7136863-T-C	7268822-T-C			Y	Y		*
7136864-G-A	7268823-G-A			Y	Y		*
7136871-T-C	7268830-T-C			Y	Y		*
7136872-G-A	7268831-G-A			Y	Y		*
7136874-ATGTG-A	7268833-ATGTG-A						*
7136881-T-A	7268840-T-A			Y	Y		*
7252377-C-CA,CAAAAA	7384336-C-CA,CAAAAA					14×A	*
7389695-G-A	7521654-G-A			Y	Y		*
7543924-AACAC-A	7675883-AACAC-A						*
7935880-C-A	8067839-C-A			Y	Y		*
8104440-G-GA	8236399-G-GA						*
8151022-T-C	8282981-T-C			Y	Y		*
8151026-T-C	8282985-T-C			Y	Y		*
8273877-T-C	8405836-T-C			Y	Y		*
8379426-G-T	8511385-G-T			Y	Y		*
8462064-CAAAA-C,CAAA	8594023-CAAAA-C,CAAA					26×A	*
	8630970-T-						*
8561376-C-CTTTTTTTTTTT,CTTTTTTTTTTTT	8693335-C-CTTTTTTTTTTT,CTTTTTTTTTTTT					8×T	*
8631871-C-CAA	8763830-C-CAA						*
8712546-TAA-T	8844505-TAA-T					11×A	*
8736921-A-C	8868880-A-C			Y	Y		*
8822605-T-C	8954564-T-C			Y	Y		*
8835221-T-C	8967180-T-C			Y	Y		*
	9120716-AT-A,ATT						*
8977030-A-C	9139421-A-C				Y		*
9139971-A-T	9302362-A-T				Y		*
9368381-A-G	9530772-A-G			Y			*
9368392-C-T	9530783-C-T			Y			*
9429480-TAA-T,TAAAAA	9591871-TAA-T,TAAAAA					18×A	*
9498129-G-GAAC	9660520-G-GAAC					5×AAC	*
10017070-T-TCA,TCACA	10179461-T-TCA,TCACA					16×CA	*
	10645989-G-A						*
	10647167-T-TCATTCCATTC,TCATTCCATTCCATTC						*
	10657266-ATTCC-						*
	10795051-GCATTCCATTC-G,GCATTC						*
	10799562-TTCTATTTCATTCCTCTCCACTCCACTCCAC-T						*
	10835554-TTGCATTTAATTCCAGTCAACTCCACTCCAC-T						*
	10876850-G-GTCCATTCCATTCCAT,GTCCATTCCATTCCAT						*
	10884757-CATT-						*
	10973925-CTCCACTCCATTCCACTCCACTCCACTCCATTCCACTCCA-C						*
13256905-T-C	11101229-T-C						*
13357216-T-G	11201540-T-G						*
13406117-A-G	11250441-A-G						*
	11292359-C-						*
	11293634-C-						*
	11295329-T-						*
	11296307-CACTCCACTGCTCTCCAATCCACTCCAA-						*
13458902-G-T	11303226-G-T						*
13479026-G-A	11323350-G-A						*
13484904-C-G	11329228-C-G						*
13489275-G-C	11333599-G-C						*
13503231-A-G	11347555-A-G						*
13506527-T-C	11350851-T-C						*
13930171-C-CA,CAA	11809465-C-CA,CAA					21×A	*
13940857-A-AAGAGAG,AAGAGAGAGAG	11820151-A-AAGAGAG,AAGAGAGAGAG					18×AG	*
14136007-A-G	12015301-A-G			Y			*
14795080-CT-AT,C	12683151-CT-AT,C					24×T	*
14857299-T-G	12745365-T-G			Y	Y		*
14857301-T-G	12745367-T-G			Y	Y		*
15015280-C-A	12903369-C-A			Y	Y		*
15116962-T-C	13005049-T-C			Y			*
	13084817-T-						*
15262344-A-T	13150428-A-T			Y	Y		*
15271069-T-A	13159158-T-A			Y	Y		*
15385860-C-CA,CAA	13273980-C-CA,CAA					14×A	*
15491777-GGT-G,G	13379897-GGT-G,G					15×GT	*
15641935-GAA-G,GA	13530055-GAA-G,GA					11×A	*
15648415-T-C,C	13536535-T-C,C						*
15876556-C-A	13764676-C-A			Y	Y		*
15932112-G-T	13820232-G-T			Y			*
16030093-A-G	13918213-A-G			Y			*
16282398-CAA-C,CAAA	14170518-CAA-C,CAAA					24×A	*
16305924-CAA-C,CA	14194044-CAA-C,CA					24×A	*
16308486-CTTTTT-C,CTTTTTT	14196606-CTTTTT-C,CTTTTTT					25×T	*
16308829-A-T	14196949-A-T			Y	Y		*
16336897-G-GTTTTTTTT	14225017-G-GTTTTTTTT					23×T	*
16426923-ATGAATGCACCAATGAGCACTCTGTATCTAGTTAGTCTGGTGGGGACTTGGAGAATCTTTATGTCTAGCTAAAGGATTG-A	14315043-ATGAATGCACCAATGAGCACTCTGTATCTAGTTAGTCTGGTGGGGACTTGGAGAATCTTTATGTCTAGCTAAAGGATTG-A						*
16447158-AACACACACACACAC-A,AACAC	14335278-AACACACACACACAC-A,AACAC					22×AC	*
16458187-T-TTG	14346307-T-TTG						*
16512424-A-AT	14400544-A-AT					8×T	*
16530874-A-G	14418994-A-G			Y	Y		*
16572965-A-G	14461085-A-G			Y	Y		*
16784404-CA-AA,C	14672524-CA-AA,C					18×A	*
16905870-CAA-C,CAAA	14793990-CAA-C,CAAA					25×A	*
16960786-G-C,C	14848906-G-C,C						*
17196431-A-G	15084551-A-G			Y	Y		*
17959178-G-GA,GAA	15847298-G-GA,GAA					9×A	*
18156810-C-T	16044930-C-T			Y			*
18219022-T-C	16107142-T-C				Y		*
18393225-CATCT-C,C	16281345-CATCT-C,C		P6_Gap			12×ATCT	*
18564316-CT-C,CTTT	16452436-CT-C,CTTT					19×T	*
18635364-G-A	16523484-G-A			Y	Y		*
18866035-CTT-C	16754155-CTT-C						*
18972343-C-CGTGT,CGTGT	16860463-C-CGTGT,CGTGT					18×GT	*
18997367-G-T	16885487-G-T			Y	Y		*
19113767-C-A	17001887-C-A			Y	Y		*
19206931-ATT-A	17095051-ATT-A						*
19215042-AT-A,A	17103162-AT-A,A					14×T	*
19352767-C-T	17240887-C-T			Y			*
19408790-T-C	17296910-T-C			Y	Y		*
19622110-GCA-G,G	17510230-GCA-G,G		P5_Prx			23×CA	*
20001266-C-A	17889386-C-A		P5_Prx				*
20104254-G-GAGA	17992374-G-GAGA		P5_Dst				*
20804004-TTGTGTG-T,TTGTG	18642118-TTGTGTG-T,TTGTG		P4_Gap			19×TG	*
21074058-T-G	18912172-T-G			Y	Y		*
21295221-GA-G	19133335-GA-G						*
21295253-T-C	19133367-T-C			Y	Y		*
21394380-A-G	19232494-A-G			Y			*
21726071-ATT-A	19564185-ATT-A					11×T	*
21909256-T-A	19747370-T-A			Y	Y		*
22159501-G-A	19997615-G-A			Y	Y		*
22230994-A-G	20069108-A-G		DYZ19				*
22289150-TCTGGCAGGTTCATGGTCTTGCTCTCTTCAAGAATGAAGCTGCAGACCTTAGTGGTGAGTGTTACAGTACTTAAAGTTGTTATATCCAGAGTTTGTTCGTTCAGATGTGTCCAGAGTTTCTTCCAA-T	20127264-TCTGGCAGGTTCATGGTCTTGCTCTCTTCAAGAATGAAGCTGCAGACCTTAGTGGTGAGTGTTACAGTACTTAAAGTTGTTATATCCAGAGTTTGTTCGTTCAGATGTGTCCAGAGTTTCTTCCAA-T		DYZ19				*
22345219-A-G	20183333-A-G		DYZ19				*
22345223-T-A	20183337-T-A		DYZ19				*
22345229-C-T	20183343-C-T		DYZ19				*
22345247-G-T	20183361-G-T		DYZ19				*
22345248-T-A	20183362-T-A		DYZ19				*
22815525-T-A,TA	20653639-T-A,TA						*
22936269-A-C	20774383-A-C			Y	Y		*
22936271-C-G	20774385-C-G			Y	Y		*
22936273-G-T	20774387-G-T	FT374987		Y	Y		*
23380232-GC-G	21218346-GC-G						*
23505495-C-CAAA,CAAAAAA	21343609-C-CAAA,CAAAAAA					23×A	*
23759113-TAAA-T,TAAAA	21597227-TAAA-T,TAAAA					24×A	*
23759121-A-G	21597235-A-G				Y		*
23761670-A-AGAAGAAGAG,AGAAGAG	21599784-A-AGAAGAAGAG,AGAAGAG						*
24381443-T-C	22235296-T-C				Y		*
24420832-TA-T	22274685-TA-T						*
24573423-CT-C,CTT	22427276-CT-C,CTT		P3_t2			21×T	*
27506585-T-C	25360438-T-C		P1_Y2				*
27827929-A-T	25681782-A-T		P1_Y2				*
27827933-G-T	25681786-G-T		P1_Y2				*
27827934-A-C	25681787-A-C		P1_Y2				*
27827938-A-T	25681791-A-T		P1_Y2				*
27827942-AAGT-A	25681795-AAGT-A		P1_Y2				*
27906750-C-T	25760603-C-T		P1_Y2				*
28376038-T-A	26229891-T-A		P1_gr2				*
28554039-C-A	26407892-C-A						*
28644508-A-G	26498361-A-G						*
28681576-G-T	26535429-G-T						*
28692500-TAA-T,TAAA	26546353-TAA-T,TAAA					19×A	*
	56829355-CTTTCCATTCGAGTCCATTCCATTCCACTCGATTGCATTCCATTCGATTCCATTCCATTCGAGACCGTTCCATTCTGATCCATTCA-						*
	56831901-TC-						*
	56831903-C-						*
	56831904-ATTCC-						*
	56833846-ACTCCACT-						*
	56837031-CACTCT-C						*
	56847003-T-A						*
	56880292-TA-T						*

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Chaoui

Tree Position

Unique Mutations