Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > Z39589 > Z16500 > A9029 > MC02 > Y45382

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-BY3
911608
BigY3
911608
3070262-A-G 3202221-A-G +A+
5342086-G-A 5474045-G-A +A+
20695145-C-CAT 18533259-C-CAT P4_Prx 8×ATA*
6220484-G-C 6352443-G-C IR3_Dst A*
18372571-G-A 16260691-G-A P6_Prx A*
21003995-G-A 18842109-G-A P4_Dst YA*
26228234-A-C 24082087-A-C P1_Y1 A*
26317105-C-T 24170958-C-T P1_Y1 A*
26417409-G-T 24271262-G-T P1_Y1 A*
23832834-T-C 21670948-T-C Y+
5550280-G-GTTTT 5682239-G-GTTTT 39×T+
20613609-CT-C 18451723-CT-C P4_Prx 13×T+
25565654-GT-G 23419507-GT-G P1_gr1 20×T+
23832832-T-C 21670946-T-C Y+
17319971-G-GAGAAAGAAAGAAAGAA 15208091-G-GAGAAAGAAAGAAAGAA 13×AGAA+
22319291-TCC-T 20157405-TCC-T DYZ19 +
5976915-C-A 6108874-C-A FTB68868 ++
10762519-C-T ++
16624849-C-T 14512969-C-T FTB60396 Y++
10887326-A-ACCATTCCATT +
10832941-T-C ++
10998005-A-T +**
58912859-A-T 56678012-T-A +**
18717752-A-G 16605872-A-G FTB60750 YY++
10763153-T-TTCCACTCCACTCCAC +
56677989-G-A +**
10921118-C-CTCCATTCCAT +
10969985-A-AC +
13963824-A-ATTTTTTTT 11843118-A-ATTTTTTTT 49×T+
10969986-T-TTCAC +
11014427-C-A +
2924303-C-T 3056262-C-T FTB68812 ++
3795537-T-C 3927496-T-C FTB68827 ++
4148665-C-G 4280624-C-G FTB68834 ++
4553982-G-A 4685941-G-A FTB68838 ++
4648193-G-A 4780152-G-A FTB68840 ++
5329093-G-C 5461052-G-C FTB68849 ++
5619594-G-A 5751553-G-A FTB68859 ++
6856706-C-CATAAATAA 6988665-C-CATAAATAA 8×ATAA+*
7524826-C-T 7656785-C-T YY++
7595397-CAG-C 7727356-CAG-C ++
9950442-G-A 10112833-G-A Y++
13222396-GGAGA-G 11066720-GGAGA-G +***
13531710-A-AAAT 11376034-A-AAAT +*
13558911-C-T 11403235-C-T ++
13569460-A-T 11413784-A-T ++
13947567-C-T 11826861-C-T FTB59956 Y++
14069926-C-A 11949220-C-A YY++
14317308-AC-A 12196602-AC-A ++
16686302-C-CT 14574422-C-CT +***
17952562-G-A 15840682-G-A FTB60642 YY++
19484841-G-A 17372961-G-A FTB60914 Y++
19532657-C-T 17420777-C-T FTB60924 YY++
19555381-G-A 17443501-G-A FTB60930 Y++
21329107-C-T 19167221-C-T FTB61000 YY++
21457814-A-G 19295928-A-G FTB61028 Y++
22246639-A-T 20084753-A-T DYZ19 +**
23618222-T-C 21456336-T-C FTB61383 YY++
28502098-C-T 26355951-C-T FTB61437 ++
28503527-T-A 26357380-T-A FTB61438 ++
56677988-G-C +**
3930762-A-ATATATATATACATATATATTT 4062721-A-ATATATATATACATATATATTT +
5996599-C-CTTT 6128558-C-CTTT 41×T+
6347777-G-GGAAA 6479736-G-GGAAA 9×GAAA+
10763138-T-TTTCAC +
10763143-C-G +
10969991-C-CTCCACTCCA +
17316026-ACAGCCAAAC-A 15204146-ACAGCCAAAC-A +
17316038-TATC-T 15204158-TATC-T +
17316046-GCCAA-G 15204166-GCCAA-G +
17316052-G-GGTC 15204172-G-GGTC +
17316055-A-C 15204175-A-C YY+
17316056-AGG-A 15204176-AGG-A +
17316060-C-T 15204180-C-T YY+
17316063-G-T 15204183-G-T YY+
17316064-TACCTAG-T 15204184-TACCTAG-T +
17316073-GACA-G 15204193-GACA-G +
17316077-GT-G 15204197-GT-G +
17316080-CT-C 15204200-CT-C +
17316084-CTCTG-C 15204204-CTCTG-C +
17316090-AGG-A 15204210-AGG-A +
17316093-TG-T 15204213-TG-T +
17316099-T-A 15204219-T-A YY+
17316100-G-A 15204220-G-A YY+
17616966-C-CA 15505086-C-CA 35×A+
19492290-C-CAAAAAAA 17380410-C-CAAAAAAA 37×A+
21551805-A-ATATGTATGTGTACATATATGTATGTATGTGTACATATATGTATG 19389919-A-ATATGTATGTGTACATATATGTATGTATGTGTACATATATGTATG +
22114006-A-AT 19952120-A-AT +
24422478-C-CAAAAAAAAA 22276331-C-CAAAAAAAAA 43×A+
56828962-T-G +
56828963-C-T +
18982547-C-CAA 16870667-C-CAA 39×A*
19318178-C-CTTT 17206298-C-CTTT 28×T*
5634005-C-A 5765964-C-A *
3172660-T-C 3304619-T-C *
3541033-C-A 3672992-C-A *
4512176-A-G 4644135-A-G *
4555316-T-G 4687275-T-G *
4559964-C-T 4691923-C-T *
4559967-G-T 4691926-G-T *
5086968-A-T 5218927-A-T *
5139407-A-G 5271366-A-G *
5637881-C-T 5769840-C-T *
5786159-AAC-A 5918118-AAC-A 8×AC*
6929159-G-T 7061118-G-T Y*
17596201-GTA-G 15484321-GTA-G *
4585401-A-G 4717360-A-G *
5087317-C-T 5219276-C-T *
5139530-A-T 5271489-A-T *
5634233-A-T 5766192-A-T *
5980639-C-T 6112598-C-T *
6929160-A-T 7061119-A-T Y*
13203742-GTGA-G 11048066-GTGA-G 5×TGA*
13687959-G-A 11532283-G-A *
21269482-CCA-C 19107596-CCA-C *
22269439-A-T 20107553-A-T BY38154 DYZ19 ****
22903820-ATG-A 20741934-ATG-A *
6858592-C-CTTTT 6990551-C-CTTTT 25×T*
5587108-A-C 5719067-A-C A13692 *
20815408-C-CATATATAT 18653522-C-CATATATAT P4_Gap 22×AT*
19250664-G-GTTTT 17138784-G-GTTTT 45×T*
22437889-C-T 20276003-C-T BY218446 DYZ19 *
21718078-G-GA 19556192-G-GA 10×A*
22437895-A-T 20276009-A-T BY218449 DYZ19 *
8901074-CACATAT-C 9033033-CACATAT-C *
16305924-C-CA 14194044-C-CA 24×A*
13489492-G-T 11333816-G-T *
15557124-A-AAT 13445244-A-AAT 19×AT*
28545723-T-A 26399576-T-A *
24472448-A-G 22326301-A-G Y*
13489462-T-C 11333786-T-C *
13257481-A-G 11101805-A-G *
11017495-G-T *
13476897-A-C 11321221-A-C *
16968183-C-A 14856303-C-A YY*
13711993-A-T 11556317-A-T *
28517963-CAA-C 26371816-CAA-C 11×A*
14875592-GTTTT-G 12763662-GTTTT-G 28×T*
10993130-A-T ****
17319948-G-GAA 15208068-G-GAA *
11017494-G-C *
18297912-C-A 16186032-C-A P6_Prx *
13489498-G-A 11333822-G-A *
18411871-G-T 16299991-G-T P6_Gap *
20084490-C-A 17972610-C-A P5_Dst *
56878253-GCA-G 9×CA*
10673523-A-T *
9847289-ATTTT-A,ATTT 10009680-ATTTT-A,ATTT 28×T*
9747152-T-G 9909543-T-G *
3412060-G-T 3544019-G-T *
13254022-C-A 11098346-C-A *
8396370-C-CA 8528329-C-CA Y130610 8×A*
19052414-C-CAA 16940534-C-CAA 24×A*
13712712-C-T 11557036-C-T *
56847213-C-T *
13718094-G-A 11562418-G-A *
16904710-C-A 14792830-C-A YY*
13447063-G-T 11291387-G-T *
18297907-TGA-T 16186027-TGA-T P6_Prx *
15565939-CA-C,CAA 13454059-CA-C,CAA 16×A*
10992268-T-A *
15336019-CAAAAAA-C 13224137-CAAAAAA-C 30×A*
14774253-CT-C,CTT 12662322-CT-C,CTT 28×T*
5381061-TTTTA-T 5513020-TTTTA-T 6×TTTA*
21085779-CAA-C,CA 18923893-CAA-C,CA 24×A*
14324894-C-CTT 12204188-C-CTT 26×T*
2807024-TTATA-T,TTA 2938983-TTATA-T,TTA 20×TA*
10772450-C-T *
8428979-C-A 8560938-C-A YY*
23747205-CTTTTTTT-C 21585319-CTTTTTTT-C 29×T*
56833851-A-ACTCCACTCTT *
15151502-CA-C,CAA 13039589-CA-C,CAA 23×A*
4019672-TA-T 4151631-TA-T 13×A*
13257464-G-A 11101788-G-A *
13591661-A-AT 11435985-A-AT 8×T*
10972115-GT-G *
9747142-T-G 9909533-T-G *
15558844-A-AT 13446964-A-AT 10×T*
13540314-C-A 11384638-C-A *
7166642-T-TA 7298601-T-TA *
28369974-C-A 26223827-C-A P1_gr2 *
16297330-GT-G,GTT 14185450-GT-G,GTT 26×T*
4269800-C-A 4401759-C-A *
17109091-AACAC-A,AAC 14997211-AACAC-A,AAC 25×AC*
4773481-CTTT-C,CTT 4905440-CTTT-C,CTT 25×T*
10892173-C-T *
3561500-CAAA-C 3693459-CAAA-C 25×A*
8470549-CA-C,CAA 8602508-CA-C,CAA 22×A*
4650524-C-T 4782483-C-T *
9556485-C-CT 9718876-C-CT IR3_Prx 9×T*
56838109-T-C *
18447451-C-G 16335571-C-G P6_Dst *
18290801-G-T 16178921-G-T P6_Prx *
3270924-ATTTT-A 3402883-ATTTT-A 25×T*
15410633-CAAAA-C,CAAA 13298753-CAAAA-C,CAAA 28×A*
5972473-T-C 6104432-T-C **
22464679-C-T 20302793-C-T DYZ19 *
15592550-CA-C,CAA 13480670-CA-C,CAA 22×A*
5960696-ATT-A,ATTT 6092655-ATT-A,ATTT 30×T*
16250624-GTTT-G,GTTTT 14138744-GTTT-G,GTTTT 28×T*
15733879-CA-C,CAA 13621999-CA-C,CAA 25×A*
21175749-CA-C,CAA 19013863-CA-C,CAA 27×A*
28817647-AGGAATGGAAT-A,AGGAAT 26671500-AGGAATGGAAT-A,AGGAAT 9×GGAAT*
4807246-C-A 4939205-C-A *
6089764-GT-G,GTT 6221723-GT-G,GTT 31×T*
23773323-T-TAC,TACAC 21611437-T-TAC,TACAC 24×AC*
9804878-A-G 9967269-A-G Y*
13611988-GT-G,GTT 11456312-GT-G,GTT 19×T*
15208845-CAA-C,CAAA 13096931-CAA-C,CAAA 23×A*
19146569-CTT-C,CT 17034689-CTT-C,CT 28×T****
4114451-CAGAGAGAG-C,CAGAG 4246410-CAGAGAGAG-C,CAGAG 19×AG*
4650526-C-T 4782485-C-T *
7199342-CT-C,CTT 7331301-CT-C,CTT 24×T*
18937647-GCAATACAATA-G,GCAATA 16825767-GCAATACAATA-G,GCAATA 13×CAATA*
10673506-CGA-C *
10673509-TTCC-T *
13204261-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT 11048585-C-CATGATGGTAGTGATAATGGTGATGGTGATGGGGATGGTATTGGTGATGATAGTGGTGATTATGAGGATGGTGGTGATGATGGTGATGGTGACAATAATGGTGATAATGATGGTATTATGATAGTGATGATGGTGGTGATGGTGATGATAATGGTGATAATGACGGT *
10661330-C-CCCATCCCATCCCATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT *
56871655-A-ATAT *
13450844-T-TCCCACA 11295168-T-TCCCACA *
22510299-C-G 20348413-C-G DYZ19 *
13429347-T-C 11273671-T-C *
4936053-CA-C,CAA 5068012-CA-C,CAA 26×A*
23006086-G-GT 20844200-G-GT 8×T*
13540253-A-AAC,AACAC 11384577-A-AAC,AACAC 23×AC*
8901076-CAT-C,CATAT 9033035-CAT-C,CATAT 15×AT*
5430840-G-T 5562799-G-T *
19138043-AATATATATATTCCACTATATATATAT-A 17026163-AATATATATATTCCACTATATATATAT-A *
21620494-GTACTA-G,G 19458608-GTACTA-G,G 12×TACTA*
23114014-A-AAT,AATATAT 20952128-A-AAT,AATATAT 22×AT*
56834405-C-CTCCACTCCTG *
56834415-T-TTCCTCTCCAC *
10632823-ATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCCATTTTATTCCATTGCATTCCATACC-A *
13476890-A-C 11321214-A-C *
13447066-C-T 11291390-C-T *
22269442-T-G 20107556-T-G DYZ19 ****
15752638-C-CCTT,CCTTCTT 13640758-C-CCTT,CCTTCTT 25×CTT*
8644324-C-CAAA,CAAA 8776283-C-CAAA,CAAA 32×A*
20835458-T-G 18673572-T-G P4_Gap *
22312649-A-G 20150763-A-G DYZ19 *
22312661-T-A 20150775-T-A DYZ19 *
13252722-A-G 11097046-A-G *
56834380-T-TTCCATTCCATTCCAC,TTCCGTTCAATTCCTC *
3838601-C-CTT 3970560-C-CTT 31×T*
56833475-T- *
56833736-TCC-T *
56833739-A-AAG *
56833841-A-AT *
20640176-C-T 18478290-C-T P4_Prx **
4175134-AT-A 4307093-AT-A 8×T*
10889266-GCCATT-G,G *
17731014-C-CA 15619134-C-CA 35×A*
19226188-AATAGATAG-A,A 17114308-AATAGATAG-A,A 14×ATAG*
2729648-CT-C,CTTTT 2861607-CT-C,CTTTT 25×T*
2803533-A-C 2935492-A-C YY*
2930319-GT-G,GTTT 3062278-GT-G,GTTT 26×T*
3081812-C-CAA 3213771-C-CAA 33×A*
3633239-G-A 3765198-G-A *
3909109-C-CAAAAAA 4041068-C-CAAAAAA 22×A*
4392282-C-CAAAA,CAAAA 4524241-C-CAAAA,CAAAA 45×A*
4427327-A-G 4559286-A-G *
4427523-A-G 4559482-A-G *
4735573-C-T 4867532-C-T *
5129480-G- *
5036591-T-C 5168550-T-C *
5128384-G-A 5260343-G-A *
5235774-T-C 5367733-T-C *
5770336-G-T 5902295-G-T *
5905890-CA-C,CAA 6037849-CA-C,CAA 27×A*
5936147-G-GTGTGT 6068106-G-GTGTGT *
6784476-G-T 6916435-G-T YY23×A*
6929163-TAGG-T 7061122-TAGG-T *
6929167-A-T 7061126-A-T Y*
6929169-A-T 7061128-A-T Y*
7100939-C-A 7232898-C-A Y*
7388053-A- *
7414120-T- *
7567753-C-CT,CTT 7699712-C-CT,CTT 25×T*
7573175-A-C 7705134-A-C Y*
8125062-G-GAGAGA,GAGAGAAGAGA 8257021-G-GAGAGA,GAGAGAAGAGA 12×AGAGA*
8167170-A-G 8299129-A-G Y*
8481026-ATGTG-A 8612985-ATGTG-A *
8563745-CT-C,CTT 8695704-CT-C,CTT 21×T*
9503771-A-ATATC,ATATCTATC 9666162-A-ATATC,ATATCTATC 12×TATC*
9521986-ATATC-A,A 9684377-ATATC-A,A 12×TATC*
9803283-TGTGTG- IR3_Prx *
9942043-A-ATTTT 10104434-A-ATTTT 28×T*
10663382-C- *
10762937-GTTCCATTCCATTCCACCCCA-G *
10762977-ATTCCACTCCCCTCCTTTCCATTCCACTCCATTCCATTCCATTCCACTGCATTCCATTCTATTCCATTACACTCCCTTCCACTCCATTCCACTCCC-A *
10785046-T-A *
10821428-A-AATCTG *
10821432-C-CG *
10821434-TTACA-T *
10821440-T-C *
10821443-T-TCTA *
10892168-T-A *
10892178-C-T *
10924725-T-A *
10935459-TTCCAGTCCACTCCAATCCCTTCCAATCCACTCCACTCCATTCCAGTCCACTCCATTCCACTCCTTTCCACTACATTCCATTCCACTCCACTCCATTCCAGTCCATTCCATTCCACTCCAC-T *
10936683-GTTCCA-G *
10954739-T-A *
11017517-TCCAGC-T *
11022419-A-ACTCCACTCCACTCCAGTCCACTCCACTCCATTCCATTCTACTCCT *
13199164-CAAA-C,CAAAA 11043488-CAAA-C,CAAAA 18×A*
13252718-C-T 11097042-C-T *
13254004-T-G 11098328-T-G *
13292048-G-C 11136372-G-C *
13292076-A-T 11136400-A-T *
13354219-C-T 11198543-C-T *
13447551-CTCCGT-C 11291875-CTCCGT-C *
13447563-CCATTCCATTGCATTCCATTGTATTCCATTCCATTGCAATGCATTCAATTCCATTCCATCCCATTCCGTTCCACTCCTGCGAGCTCCACTCCACTCCACTCCACTG-C 11291887-CCATTCCATTGCATTCCATTGTATTCCATTCCATTGCAATGCATTCAATTCCATTCCATCCCATTCCGTTCCACTCCTGCGAGCTCCACTCCACTCCACTCCACTG-C *
13451211-C-CCATTCCATTCCATTCCACGT 11295535-C-CCATTCCATTCCATTCCACGT *
13451967-C-T 11296291-C-T *
13451971-TCCACTCCA-T 11296295-TCCACTCCA-T *
11296296-CCACTCCACACCACTCCACTGCTCTCCAATCCACTCCAATCCATTCCACTCCAGTCCATTCCAATCCATTCCACTCTACGCCATAACATTAAGCTCCACTCCACTCCATTCCATTCCACCACACTCCACCCCATTCCATTCCACTTGATTCCATTCCACTGCACTCCATTCCACCCCCATCCACTCCATTCCAGTCCACTCCACTCAACTCCATTCCATTCCACACCAATCCGTTCCACTCCATTT- *
13452014-A-T 11296338-A-T *
13452029-ATTCCAATCCATTCCACTCTACGCCATAACATTAAG-A 11296353-ATTCCAATCCATTCCACTCTACGCCATAACATTAAG-A *
13452073-CA-C 11296397-CA-C *
13452090-CCACACTCCACCCCATTCCATTCCACTTGATTCCAT-C 11296414-CCACACTCCACCCCATTCCATTCCACTTGATTCCAT-C *
13452132-GCACTCCATTCCACCCC-G 11296456-GCACTCCATTCCACCCC-G *
13452151-T-TG 11296475-T-TG *
13452160-TTCCAGTCCACTCCACTCAAC-T 11296484-TTCCAGTCCACTCCACTCAAC-T *
13455035-TATTCCATTCCATTCCATTCCATTGCATTCC-T 11299359-TATTCCATTCCATTCCATTCCATTGCATTCC-T 4×ATTCC*
13455129-CCATTCCATTCCATTCCATTCCATTCCATTCCACTCCACTCTGTTG-C 11299453-CCATTCCATTCCATTCCATTCCATTCCATTCCACTCCACTCTGTTG-C *
13518171-A-G 11362495-A-G *
13923558-A-AATATAT,T 11802852-A-AATATAT,T 20×AT*
13936205-G-GAAGAAAGA,GAAGAAAGAAAGA 11815499-G-GAAGAAAGA,GAAGAAAGAAAGA 14×AAGA*
13977204-C-CA 11856498-C-CA *
13977211-T-A 11856505-T-A Y*
13977217-G-A 11856511-G-A Y*
14114867-GT-G 11994161-GT-G *
14331131-C-CTTTTTTTTTTT 12210425-C-CTTTTTTTTTTT 25×T*
14456670-CAG-C 12335943-CAG-C *
14456673-C-T 12335946-C-T Y*
14464762-G-GTGGTATGATCTT 12344035-G-GTGGTATGATCTT *
14532368-CGA-C 12420569-CGA-C *
14532372-G-C 12420573-G-C Y*
12497709-CTGGCCGGGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCGGGTGGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACAAGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAAAAT-C *
14727319-ATTT-A,ATTTT 12615387-ATTT-A,ATTTT 23×T*
14796196-T-G 12684267-T-G Y*
15128121-CTTTT-C,CTTT 13016208-CTTTT-C,CTTT 18×T*
13197843-C-CAAAA,CAAAAA 42×A*
16505988-C-CTTT,CTTT 14394108-C-CTTT,CTTT 31×T*
16692757-GAA-G,TAA 14580877-GAA-G,TAA 27×A*
17030757-ATT-A,ATTT 14918877-ATT-A,ATTT 24×T*
17278273-CGAAA-C,C 15166393-CGAAA-C,C 16×GAAA*
17281991-TGATA-T,T 15170111-TGATA-T,T 7×GATA*
17441175-A-AAT,AATAT 15329295-A-AAT,AATAT 20×AT*
17446767-CT-C,CTTT 15334887-CT-C,CTTT 33×T*
17597920-G-GA,GAA 15486040-G-GA,GAA 11×A*
17662167-GTAGATAGA-G,G 15550287-GTAGATAGA-G,G 16×TAGA*
17923882-T-TG 15812002-T-TG *
17946943-TGAG-T 15835063-TGAG-T *
17946946-G-GTTTT 15835066-G-GTTTT *
18039366-ATT-A,ATTT 15927486-ATT-A,ATTT 30×T*
18067401-TAGAA-T,T 15955521-TAGAA-T,T 15×AGAA*
18292597-A-G 16180717-A-G P6_Prx *
18401199-CAA-C,CAAA 16289319-CAA-C,CAAA P6_Gap 30×A*
18846045-C-A 16734165-C-A Y*
19071363-A-C 16959483-A-C Y*
19125694-C-CA,CAA 17013814-C-CA,CAA 24×A*
19126436-C-CAAAAAAAAA,CAAAAAAAAAAA 17014556-C-CAAAAAAAAA,CAAAAAAAAAAA 25×A*
19393098-CT-C,CTTT 17281218-CT-C,CTTT 30×T*
19500150-GTAGATAGATAGA-G,G 17388270-GTAGATAGATAGA-G,G 14×TAGA*
19500593-GAGAAAGAA-G,G 17388713-GAGAAAGAA-G,G 15×AGAA*
20305768-TA-T 18143882-TA-T P5_Dst 9×A*
20363066-GAAAC-G 18201180-GAAAC-G P5_Dst 5×AAAC*
20815458-T-G 18653572-T-G P4_Gap *
20815462-T-G 18653576-T-G P4_Gap 12×AC*
21050838-TTATC-T,T 18888952-TTATC-T,T 10×TATC*
21109633-C-T 18947747-C-T Y*
21402181-CT-C,CTTTT 19240295-CT-C,CTTTT 34×T*
21411718-CAAAA-C,CAAAAA 19249832-CAAAA-C,CAAAAA 31×A*
21475542-T-A 19313656-T-A Y*
21553403-CTTT-C,CTT 19391517-CTTT-C,CTT 31×T*
21665705-T-TAATAAATA,TAATAAATA 19503819-T-TAATAAATA,TAATAAATA 13×AATA*
21853677-C-CAAA,CAAA 19691791-C-CAAA,CAAA 43×A*
22167224-C-CAAAAAAAAAAAAA 20005338-C-CAAAAAAAAAAAAA 29×A*
22253436-G-C 20091550-G-C DYZ19 *
22253438-G-A 20091552-G-A DYZ19 *
22253446-G-C 20091560-G-C DYZ19 *
22270035-C-T 20108149-C-T DYZ19 *
22437822-C-T 20275936-C-T DYZ19 *
22468489-T-C 20306603-T-C DYZ19 *
22468493-T-A 20306607-T-A DYZ19 *
22468501-G-C 20306615-G-C DYZ19 *
22473131-G-A 20311245-G-A FT459389 DYZ19 *
22473134-G-C 20311248-G-C FT459392 DYZ19 *
22473135-G-T 20311249-G-T BY222856 DYZ19 *
22713350-G-A 20551464-G-A Y*
23063698-TTTTA-T,T 20901812-TTTTA-T,T 10×TTTA*
23241950-T-G 21080064-T-G Y*
21105159-T- *
24283184-C-A 22137037-C-A P3_t1 *
24283189-G-T 22137042-G-T P3_t1 *
24575876-CTT-C,CT 22429729-CTT-C,CT P3_t2 24×T*
24614413-GA-G 22468266-GA-G P3_t2 10×A*
27839897-A-T 25693750-A-T P1_Y2 *
27936325-G-GA 25790178-G-GA P1_Y2 10×A*
28023633-T-G 25877486-T-G P1_Y2 *
28437292-G-GA 26291145-G-GA P1_gr2 9×A*
28545880-CA-C,CAA 26399733-CA-C,CAA 20×A*
28619320-A-C 26473173-A-C *
28619323-T-G 26473176-T-G *
28748329-T-C 26602182-T-C *
28778852-C-CTTTT,CTTTTT 26632705-C-CTTTT,CTTTTT 33×T*
28814157-G-T 26668010-G-T *
28814162-C-G 26668015-C-G *
28814166-G-T 26668019-G-T *
28814167-G-T 26668020-G-T *
56832956-T-TTACATTCCACTCCACTCCAC *
56832964-C-CACTCCATTCT *
56833347-ATTC-A *
56833823-A-ACGATT *
56834906-T-TC *
56834907-TACATGTCAA-T *
56834920-T-TTCA *
56843715-A-C *
56873364-A-AAC,AACAC 20×AC*
13223282-A-G 11067606-A-G **
13704918-C-A 11549242-C-A **
22271997-T-C 20110111-T-C BY24412 DYZ19 **
13719500-G-T 11563824-G-T **
19700241-CAAAA-C 17588361-CAAAA-C P5_Prx 19×A**
24605006-G-GCC 22458859-G-GCC P3_t2 **
26357109-A-C 24210962-A-C P1_Y1 **
13461330-C-A 11305654-C-A **
13520480-G-C 11364804-G-C **
16115399-T-G 14003519-T-G P8_Prx **
19864080-CT-C 17752200-CT-C P5_Prx 8×T**
17319965-AAGGAAG-A 15208085-AAGGAAG-A ***
7532276-GTATATATATATA-G 7664235-GTATATATATATA-G 28×TA***
25246447-C-CT 23100300-C-CT P2_r1 41×T***
10889266-GCCATTCCATTCCATTCCATT-G,GCCATTCCATTCCATT ***
20815456-C-T 18653570-C-T P4_Gap ***
26500449-AAA-A,AAC 24354302-AAA-A,AAC P1_Y1 ***
16064437-AC-A 13952557-AC-A ***
22263141-G-C 20101255-G-C DYZ19 ***
22271985-C-A 20110099-C-A DYZ19 ***
22301844-T-G 20139958-T-G DYZ19 ***
22301849-G-A 20139963-G-A DYZ19 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.