Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2881 > DF29 > Z58 > Z59 > Z62 > Z60 > Z140

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRKane-BY3
454875
hg19:Y:17220810-G-T hg38:Y:15108930-G-T Y+
hg19:Y:2649715-G-C hg38:Y:2781674-G-C Y+
hg19:Y:5736199-G-A hg38:Y:5868158-G-A FT80630 +
hg19:Y:6504095-G-A hg38:Y:6636054-G-A FT80689 +
hg19:Y:6866955-T-C hg38:Y:6998914-T-C YY+
hg19:Y:7647336-C-A hg38:Y:7779295-C-A YY+
hg19:Y:7688376-T-G hg38:Y:7820335-T-G YY+
hg19:Y:7899080-G-A hg38:Y:8031039-G-A YY+
hg19:Y:7922775-G-A hg38:Y:8054734-G-A YY+
hg19:Y:8333522-C-CTTCTTG hg38:Y:8465481-C-CTTCTTG +
hg19:Y:8392766-CA-C hg38:Y:8524725-CA-C +
hg19:Y:8644324-C-CAAAAAAA hg38:Y:8776283-C-CAAAAAAA 32×A+
hg19:Y:9832628-GC-G hg38:Y:9995019-GC-G +
hg19:Y:9984466-A-T hg38:Y:10146857-A-T Y+
hg19:Y:13496494-G-T hg38:Y:11340818-G-T +
hg19:Y:13513660-C-G hg38:Y:11357984-C-G FT230061 +
hg19:Y:13579399-G-T hg38:Y:11423723-G-T +
hg19:Y:13641666-G-A hg38:Y:11485990-G-A FT230060 +
hg19:Y:13678228-CTCGAATGGAATGGAG-C hg38:Y:11522552-CTCGAATGGAATGGAG-C DYZ17 +
hg19:Y:14062010-C-CAAAAAAAA hg38:Y:11941304-C-CAAAAAAAA 34×A+
hg19:Y:14079200-C-G hg38:Y:11958494-C-G YY+
hg19:Y:14314420-C-T hg38:Y:12193714-C-T YY+
hg19:Y:15745446-T-C hg38:Y:13633566-T-C FT80854 YY+
hg19:Y:17220817-A-C hg38:Y:15108937-A-C Y+
hg19:Y:18611732-C-T hg38:Y:16499852-C-T FT24339 YY+
hg19:Y:19375009-C-T hg38:Y:17263129-C-T YY+
hg19:Y:20819135-G-A hg38:Y:18657249-G-A P4_Gap +
hg19:Y:21752036-G-A hg38:Y:19590150-G-A YY+
hg19:Y:21989217-G-T hg38:Y:19827331-G-T YY+
hg19:Y:22130676-A-G hg38:Y:19968790-A-G YY+
hg19:Y:22233617-A-T hg38:Y:20071731-A-T DYZ19 +
hg19:Y:22473130-G-A hg38:Y:20311244-G-A BY51795 DYZ19 +
hg19:Y:22800791-A-C hg38:Y:20638905-A-C FT81015 Y+
hg19:Y:23293557-A-AGTGT hg38:Y:21131671-A-AGTGT 21×GT+
hg19:Y:24371061-C-T hg38:Y:22224914-C-T +
hg19:Y:24872746-A-G hg38:Y:22726599-A-G IR1_R +
hg19:Y:28670638-T-G hg38:Y:26524491-T-G +
hg19:Y:58980937-C-CATTCCATTCCACTCCACTCCATTCA hg38:Y:56834790-C-CATTCCATTCCACTCCACTCCATTCA *
hg19:Y:15306803-TA-T hg38:Y:13194905-TA-T 9×A*
hg19:Y:3889019-C-CT hg38:Y:4020978-C-CT 15×T*
hg19:Y:3572950-A-G hg38:Y:3704909-A-G *
hg19:Y:59025533-A-G hg38:Y:56879386-A-G *
hg19:Y:16768619-G-T hg38:Y:14656739-G-T A16892 YY*
hg19:Y:7310571-C-CT hg38:Y:7442530-C-CT 21×T*
hg19:Y:15753178-C-CTT hg38:Y:13641298-C-CTT 20×T*
hg19:Y:18423888-A-C hg38:Y:16312008-A-C P6_Gap *
hg19:Y:15566817-GAAAA-G hg38:Y:13454937-GAAAA-G 22×A*
hg38:Y:56830319-A-ATTCCACTCCATTCCT *
hg19:Y:14977296-C-CTT hg38:Y:12865371-C-CTT 15×T*
hg19:Y:19130738-C-CT hg38:Y:17018858-C-CT 33×T*
hg19:Y:20104244-A-AG hg38:Y:17992364-A-AG P5_Dst 13×G*
hg19:Y:7150391-CA-C hg38:Y:7282350-CA-C 10×A*
hg19:Y:6874882-CA-C hg38:Y:7006841-CA-C 9×A*
hg19:Y:3543562-AT-A hg38:Y:3675521-AT-A 8×T*
hg19:Y:20333835-C-CAA hg38:Y:18171949-C-CAA P5_Dst 24×A*
hg19:Y:15424272-C-CAA hg38:Y:13312392-C-CAA 11×A*
hg19:Y:17926565-G-T hg38:Y:15814685-G-T YY*
hg19:Y:2888705-CAA-C,CAAA hg38:Y:3020664-CAA-C,CAAA 16×A*
hg19:Y:15899064-T-TA hg38:Y:13787184-T-TA 11×A*
hg38:Y:10759307-C-A *
hg38:Y:10658342-C-G *
hg19:Y:21730548-ATT-A,AT hg38:Y:19568662-ATT-A,AT 23×T*
hg19:Y:23189865-GA-G,GAA hg38:Y:21027979-GA-G,GAA 13×A*
hg19:Y:21966545-A-T hg38:Y:19804659-A-T Y*
hg19:Y:19528524-C-CAA hg38:Y:17416644-C-CAA 18×A*
hg19:Y:4370626-CACACACAG-C hg38:Y:4502585-CACACACAG-C *
hg19:Y:16297362-C-A hg38:Y:14185482-C-A YY*
hg19:Y:13489850-C-A hg38:Y:11334174-C-A *
hg19:Y:16045135-T-TTC hg38:Y:13933255-T-TTC 9×TC*
hg19:Y:13463173-A-T hg38:Y:11307497-A-T *
hg19:Y:17923876-GTTTT-G,GTTT hg38:Y:15811996-GTTTT-G,GTTT 18×T*
hg19:Y:13470433-C-T hg38:Y:11314757-C-T *
hg19:Y:17192867-TG-T,TGG hg38:Y:15080987-TG-T,TGG 12×G*
hg19:Y:7567753-CTT-C,CTTT hg38:Y:7699712-CTT-C,CTTT 25×T*
hg19:Y:13689346-G-T hg38:Y:11533670-G-T DYZ17 *
hg19:Y:6359640-TAAAA-T,TAAA hg38:Y:6491599-TAAAA-T,TAAA 22×A*
hg19:Y:21732690-A-AT hg38:Y:19570804-A-AT 8×T*
hg38:Y:11006084-CTCCAT-C *
hg19:Y:14392735-CTT-C,CTTT hg38:Y:12272031-CTT-C,CTTT 17×T*
hg19:Y:21698309-TAAAA-T hg38:Y:19536423-TAAAA-T 24×A*
hg19:Y:21680399-G-GA hg38:Y:19518513-G-GA 8×A*
hg19:Y:22202913-TTTA-T hg38:Y:20041027-TTTA-T 5×TTA*
hg19:Y:8568465-G-GTT hg38:Y:8700424-G-GTT 22×T*
hg19:Y:24447011-A-G hg38:Y:22300864-A-G Y*
hg19:Y:23352313-G-A hg38:Y:21190427-G-A YY*
hg19:Y:17419435-C-A hg38:Y:15307555-C-A YY*
hg19:Y:15475486-G-GA hg38:Y:13363606-G-GA 9×A*
hg19:Y:16271807-GA-G,GAA hg38:Y:14159927-GA-G,GAA 19×A*
hg19:Y:17203327-CTT-C,CT hg38:Y:15091447-CTT-C,CT 21×T*
hg19:Y:24472421-GTT-G,GTTT hg38:Y:22326274-GTT-G,GTTT 25×T*
hg19:Y:13690085-G-A hg38:Y:11534409-G-A DYZ17 *
hg19:Y:23194817-CT-C,CTT hg38:Y:21032931-CT-C,CTT 24×T*
hg38:Y:56858289-G-A *
hg19:Y:3501955-CAAAAA-C,CAAAA hg38:Y:3633914-CAAAAA-C,CAAAA 22×A*
hg19:Y:7131386-AC-A,ACC hg38:Y:7263345-AC-A,ACC 14×C*
hg19:Y:21454204-CA-C,CAA hg38:Y:19292318-CA-C,CAA 18×A*
hg19:Y:23098816-CAAAAAAAA-C,CAAA hg38:Y:20936930-CAAAAAAAA-C,CAAA 25×A*
hg19:Y:13450411-CTCCATTCCATTCCATTCTATTCCAT-C hg38:Y:11294735-CTCCATTCCATTCCATTCTATTCCAT-C *
hg19:Y:22127975-CTTTT-C,CTTT hg38:Y:19966089-CTTTT-C,CTTT 20×T*
hg19:Y:4022110-G-A hg38:Y:4154069-G-A *
hg19:Y:15940306-CAA-C,CA hg38:Y:13828426-CAA-C,CA 24×A*
hg19:Y:7524670-C-A hg38:Y:7656629-C-A YY*
hg19:Y:3752439-T-A hg38:Y:3884398-T-A *
hg19:Y:3752442-T-A hg38:Y:3884401-T-A *
hg19:Y:14071354-CTTTTTTT-C,CTTTTTT hg38:Y:11950648-CTTTTTTT-C,CTTTTTT 25×T*
hg19:Y:7100954-CTT-C,CTTT hg38:Y:7232913-CTT-C,CTTT 32×T*
hg19:Y:13944051-CAA-C,CAAA hg38:Y:11823345-CAA-C,CAAA 22×A*
hg19:Y:6521551-GTTTT-G hg38:Y:6653510-GTTTT-G 17×T*
hg19:Y:15179010-CAAA-C,CAA hg38:Y:13067096-CAAA-C,CAA 25×A*
hg38:Y:10632799-TC-T,T *
hg38:Y:10632802-ATTCCATTCCACTCCAT-A,A *
hg19:Y:4559543-T-G hg38:Y:4691502-T-G *
hg19:Y:13449956-C-CCTCCTCCGTT hg38:Y:11294280-C-CCTCCTCCGTT *
hg19:Y:5400457-G-T hg38:Y:5532416-G-T *
hg19:Y:3596555-AT-A hg38:Y:3728514-AT-A 9×T*
hg19:Y:13450438-C-G hg38:Y:11294762-C-G *
hg38:Y:56834056-C-G *
hg38:Y:10632823-ATTCCATTCCTTTTCTTCGACAGGATCTCGCTCTGTCACTCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACATTTCATTTCACCATTCC-A,A *
hg38:Y:56826866-CCATTCCATTCGAGACTGTACTATTACACTCCATTCGATTCCATTCCATTCGATTA- *
hg19:Y:23017880-A-G hg38:Y:20855994-A-G FT124386 Y*
hg19:Y:23017896-C-T hg38:Y:20856010-C-T Y*
hg19:Y:15077879-TTA-T hg38:Y:12965969-TTA-T *
hg19:Y:5945467-CTT-C,CTTT hg38:Y:6077426-CTT-C,CTTT 25×T*
hg19:Y:8888375-CT-C,C hg38:Y:9020334-CT-C,C 25×T*
hg19:Y:5636420-A-C hg38:Y:5768379-A-C *
hg19:Y:2668272-T-C hg38:Y:2800231-T-C YY*
hg38:Y:3965718-TAGATAG- *
hg19:Y:3912233-CTT-C hg38:Y:4044192-CTT-C 14×T*
hg19:Y:3928289-C-T hg38:Y:4060248-C-T *
hg19:Y:4022795-A-G hg38:Y:4154754-A-G *
hg19:Y:4049365-G-T hg38:Y:4181324-G-T *
hg19:Y:4109232-T-C hg38:Y:4241191-T-C *
hg19:Y:4207957-CAAAA-C,CAAA hg38:Y:4339916-CAAAA-C,CAAA 22×A*
hg19:Y:4539216-A-G hg38:Y:4671175-A-G *
hg19:Y:4601954-A-AT hg38:Y:4733913-A-AT 9×T*
hg19:Y:4651422-GA-G,G hg38:Y:4783381-GA-G,G 11×A*
hg38:Y:4926816-T- *
hg19:Y:4976787-CA-C,CAA hg38:Y:5108746-CA-C,CAA 21×A*
hg19:Y:5204648-A-G hg38:Y:5336607-A-G *
hg19:Y:5344789-T-C hg38:Y:5476748-T-C *
hg19:Y:5350037-CTTT-C,CTTTT hg38:Y:5481996-CTTT-C,CTTTT 21×T*
hg19:Y:5869983-T-C hg38:Y:6001942-T-C *
hg19:Y:6358609-C-A hg38:Y:6490568-C-A *
hg19:Y:6395529-A-T hg38:Y:6527488-A-T *
hg19:Y:7783780-GAAA-G hg38:Y:7915739-GAAA-G 12×A*
hg19:Y:8272134-AT-A,A hg38:Y:8404093-AT-A,A 10×T*
hg19:Y:8774816-C-A hg38:Y:8906775-C-A YY*
hg38:Y:9120866-A-C *
hg19:Y:9139590-T-C hg38:Y:9301981-T-C Y*
hg19:Y:9172470-C-T hg38:Y:9334861-C-T BY78815 Y*
hg19:Y:9329136-A-G hg38:Y:9491527-A-G Y*
hg19:Y:9380517-G-GTT hg38:Y:9542908-G-GTT 10×T*
hg19:Y:9577067-G-A hg38:Y:9739458-G-A IR3_Prx *
hg19:Y:9786754-G-A hg38:Y:9949145-G-A Y*
hg19:Y:10020101-G-A hg38:Y:10182492-G-A Y*
hg38:Y:10685784-C-CTCCATTCCATTCCAT *
hg38:Y:10935579-C-CTCCATTCCATTCCAT,CTCCATTCCATTCCAT *
hg38:Y:10950152-A-G *
hg19:Y:13322324-T-C hg38:Y:11166648-T-C *
hg19:Y:13323494-CAAAAA-C,CAAA hg38:Y:11167818-CAAAAA-C,CAAA 24×A*
hg19:Y:13358012-CT-C hg38:Y:11202336-CT-C *
hg19:Y:13362843-T-A hg38:Y:11207167-T-A *
hg19:Y:13362848-C-A hg38:Y:11207172-C-A *
hg19:Y:13463072-CGGCG-C hg38:Y:11307396-CGGCG-C *
hg19:Y:13514188-C-A hg38:Y:11358512-C-A *
hg19:Y:13616841-T-G hg38:Y:11461165-T-G *
hg19:Y:13690070-G-A hg38:Y:11534394-G-A DYZ17 *
hg19:Y:13886887-G-T hg38:Y:11766181-G-T Y*
hg19:Y:14331131-CT-C,CTTTTTTTT hg38:Y:12210425-CT-C,CTTTTTTTT 25×T*
hg19:Y:14517390-T-C hg38:Y:12405591-T-C Y*
hg38:Y:12555882-CAAAA-C,CAAA 24×A*
hg19:Y:14768588-G-A hg38:Y:12656657-G-A YY*
hg19:Y:14783421-C-T hg38:Y:12671491-C-T YY*
hg19:Y:14823487-T-C hg38:Y:12711554-T-C YY*
hg38:Y:13143855-G-GGTGT,GGTGTGT 23×GT*
hg38:Y:13246880-GAAAA-G,GAAAAA 27×A*
hg19:Y:15852587-T-C hg38:Y:13740707-T-C YY*
hg19:Y:15866268-CAAAAAAAAAAAAAAAAAA-C,CAA hg38:Y:13754388-CAAAAAAAAAAAAAAAAAA-C,CAA 43×A*
hg19:Y:16484096-AT-A,A hg38:Y:14372216-AT-A,A 12×T*
hg19:Y:16692775-A-G hg38:Y:14580895-A-G YY*
hg19:Y:16991073-GT-G,G hg38:Y:14879193-GT-G,G 13×T*
hg19:Y:17231955-A-AT hg38:Y:15120075-A-AT *
hg19:Y:17264628-T-C hg38:Y:15152748-T-C YY*
hg19:Y:17545075-GA-G hg38:Y:15433195-GA-G *
hg19:Y:17592345-CTT-C,CTTTT hg38:Y:15480465-CTT-C,CTTTT 24×T*
hg19:Y:17703255-A-AAAG,AAG hg38:Y:15591375-A-AAAG,AAG 6×AAAG*
hg19:Y:18414381-AGAAG-A,A hg38:Y:16302501-AGAAG-A,A P6_Gap 15×GAAG*
hg19:Y:18615932-CTT-C,CTTTT hg38:Y:16504052-CTT-C,CTTTT 27×T*
hg19:Y:18760242-TTCTCTCTCTCTC-T,T hg38:Y:16648362-TTCTCTCTCTCTC-T,T 27×TC*
hg19:Y:18799475-A-T hg38:Y:16687595-A-T Y*
hg19:Y:18994849-AGAAG-A,A hg38:Y:16882969-AGAAG-A,A 6×GAAG*
hg38:Y:16947868-T- *
hg19:Y:19223248-T-C hg38:Y:17111368-T-C YY*
hg19:Y:19226188-AATAG-A,A hg38:Y:17114308-AATAG-A,A 14×ATAG*
hg19:Y:21204109-C-T hg38:Y:19042223-C-T YY*
hg19:Y:21371255-T-TA hg38:Y:19209369-T-TA *
hg19:Y:21907529-G-GT,GTT hg38:Y:19745643-G-GT,GTT 9×T*
hg19:Y:22085854-T-C hg38:Y:19923968-T-C FTB49503 YY*
hg19:Y:22513499-CT-C hg38:Y:20351613-CT-C *
hg19:Y:22536031-G-A hg38:Y:20374145-G-A Y*
hg19:Y:22577951-GA-G,GAA hg38:Y:20416065-GA-G,GAA 24×A*
hg19:Y:22802900-TGCTGG-T hg38:Y:20641014-TGCTGG-T *
hg19:Y:22802905-G-GTTTTTTTT hg38:Y:20641019-G-GTTTTTTTT *
hg19:Y:22855794-A-G hg38:Y:20693908-A-G Y*
hg19:Y:22868285-TAA-T,TA hg38:Y:20706399-TAA-T,TA 27×A*
hg19:Y:23017871-C-A hg38:Y:20855985-C-A Y*
hg19:Y:23579994-T-C hg38:Y:21418108-T-C YY*
hg19:Y:23781721-C-T hg38:Y:21619835-C-T Y*
hg19:Y:23855114-TA-T hg38:Y:21693228-TA-T 9×A*
hg19:Y:24072046-T-C hg38:Y:21925899-T-C P3_b1 *
hg19:Y:24205523-C-T hg38:Y:22059376-C-T P3_b1 *
hg19:Y:24480177-A-C hg38:Y:22334030-A-C Y*
hg19:Y:26498627-A-G hg38:Y:24352480-A-G P1_Y1 *
hg19:Y:27637198-TCA-ACA,T hg38:Y:25491051-TCA-ACA,T P1_Y2 17×CA*
hg19:Y:28458302-A-T hg38:Y:26312155-A-T *
hg19:Y:28545880-CAA-C,CA hg38:Y:26399733-CAA-C,CA 20×A*
hg19:Y:28564248-T-A hg38:Y:26418101-T-A *
hg19:Y:28735626-CT-C,C hg38:Y:26589479-CT-C,C 12×T*
hg19:Y:28805754-A-G hg38:Y:26659607-A-G *
hg19:Y:28815995-G-A hg38:Y:26669848-G-A *
hg19:Y:28816919-A-T hg38:Y:26670772-A-T *
hg19:Y:28818898-G-T hg38:Y:26672751-G-T *
hg19:Y:28818900-A-G hg38:Y:26672753-A-G *
hg19:Y:28818909-A-C hg38:Y:26672762-A-C *
hg38:Y:56832357-C-CCACTCCTTTCCATTCCACTCCTTTCAACTCCACTCCCCTCCAA *
hg38:Y:56851120-CCCAGGTGATGTAACTGTTGTATAAG-C *
hg38:Y:56873364-A-AACAC,AACACAC 20×AC*

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 4548751435551589935128074491
Used in age calculations1435551589935128074491
Counts of SNPs4935
Variant counts last updated 2025-11-30 02:48:12.



Big Tree Main Page