Waddell

BigY3: 905962
MDKA Birth: United Kingdom

Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > M145/P205/PF144 > M96/PF1823 > P147 > P177 > M215 > M35 > L539

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
905962
5825493-T-G 5957452-T-G A+
21006509-G-GAC 18844623-G-GAC P4_Dst 16×ACA*
19810723-A-C 17698843-A-C P5_Prx A*
13687133-C-T 11531457-C-T A*
13805457-G-C 11684751-G-C A*
17278293-A-C 15166413-A-C YYA*
19606990-C-A 17495110-C-A P5_Prx YA*
19625059-A-G 17513179-A-G P5_Prx A*
19667790-A-C 17555910-A-C P5_Prx A*
19812397-A-T 17700517-A-T P5_Prx A*
20554719-T-C 18392833-T-C P5_Dst A*
20754600-G-A 18592714-G-A P4_Prx A*
20754601-C-A 18592715-C-A P4_Prx A*
24266503-C-A 22120356-C-A P3_b1 A*
26025889-C-T 23879742-C-T P1_Y1 A*
26250355-G-A 24104208-G-A P1_Y1 A*
26384632-T-C 24238485-T-C P1_Y1 A*
15586770-C-T 13474890-C-T YY+
3822716-CAT-C 3954675-CAT-C +
3867004-AT-A 3998963-AT-A +
5083177-C-T 5215136-C-T FT141736 +
5218344-G-A 5350303-G-A FT141744 +
5303963-T-A 5435922-T-A FT141756 +
5646928-T-G 5778887-T-G FT141797 +
5894049-T-C 6026008-T-C FT141831 +
5987674-G-C 6119633-G-C FTB68112 +
6031602-G-C 6163561-G-C FT141843 +
6501621-T-A 6633580-T-A FT141867 +
7826839-G-T 7958798-G-T FT141964 YY+
8478754-G-C 8610713-G-C YY+
8694556-C-T 8826515-C-T FT142028 YY+
10745344-C-T FT367876 +
13831290-G-C 11710584-G-C FT142081 +
13854748-G-A 11734042-G-A FT64108 +
14116760-A-G 11996054-A-G FT142116 YY+
14381069-G-A 12260365-G-A Y+
14650054-G-A 12538119-G-A FT142149 YY+
14868109-T-G 12756179-T-G YY+
16090356-G-A 13978476-G-A FT142250 Y+
16132465-T-C 14020585-T-C +
16917231-T-C 14805351-T-C YY+
17451524-C-G 15339644-C-G FT142353 Y+
18336252-T-TAA 16224372-T-TAA P6_Prx +
20497376-TTC-T 18335490-TTC-T P5_Dst +
21093614-C-G 18931728-C-G FT142517 YY+
21266814-G-A 19104928-G-A FT142527 YY+
21328100-C-T 19166214-C-T FT182032 YY+
21711805-G-C 19549919-G-C FT142560 YY+
22281319-G-A 20119433-G-A BY216019 DYZ19 +
22911960-G-A 20750074-G-A BY30351 YY+
23130621-A-G 20968735-A-G BY143206 YY+
23377198-A-T 21215312-A-T FT142676 YY+
24370995-C-A 22224848-C-A +
24371276-A-G 22225129-A-G FT142721 +
24447789-T-A 22301642-T-A Y+
28605149-C-G 26459002-C-G FT142747 +
23139032-T-TA 20977146-T-TA A7537 9×A*
19422124-C-CAAT 17310244-C-CAAT 7×AAT*
22093166-T-TTGTGTG 19931280-T-TTGTGTG 22×TG*
27595993-A-C 25449846-A-C P1_Y2 *
28076526-TC-T 25930379-TC-T P1_Y2 *
28797815-A-ATGGAT 26651668-A-ATGGAT **
21023249-GTTTT-G 18861363-GTTTT-G P4_Dst 14×T**
24280844-G-T 22134697-G-T P3_t1 **
26465355-C-A 24319208-C-A P1_Y1 14×A**
56843570-A-C **
20714147-C-A 18552261-C-A P4_Prx **
25574802-C-CTT 23428655-C-CTT P1_gr1 17×T**
20714182-C-A 18552296-C-A P4_Prx **
3588094-GTATATATATATATATATATATA-G 3720053-GTATATATATATATATATATATA-G 24×TA**
4729754-T-A 4861713-T-A FT366730 **
10915888-T-A **
14795535-A-G 12683606-A-G **
16104629-T-G 13992749-T-G P8_Prx **
20030112-G-T 17918232-G-T P5_Prx **
22272016-T-A 20110130-T-A BY215305 DYZ19 **
12888-A-T **
23825778-AT-A 21663892-AT-A ***
10781251-C-CTCCAT ***
21554473-ATT-A,AT 19392587-ATT-A,AT 17×T***
13468262-A-G,T 11312586-A-G,T ***
14609774-T-G 12497976-T-G ***
56838610-G-A ***
22540536-G-A 20378650-G-A ***
13483388-A-C 11327712-A-C ***
4223612-T-G 4355571-T-G ***
13483396-C-A 11327720-C-A ***
9910621-T-G 10073012-T-G ***
7110518-ATT-A,AT 7242477-ATT-A,AT 12×T***
56871631-A-AAAAT 10×AT***
4471003-CTTTTTTT-C 4602962-CTTTTTTT-C 29×T***
4570572-A-AT 4702531-A-AT ***
5042180-GATAT-G,GAT 5174139-GATAT-G,GAT 17×AT***
5354729-TATATATATATATATATACAC-T,TATATATATATATATATATAT 5486688-TATATATATATATATATACAC-T,TATATATATATATATATATAT ***
5937240-CTCTATATATATATA-C,CTATATATATATA 6069199-CTCTATATATATATA-C,CTATATATATATA ***
6225985-T-TTTCC 6357944-T-TTTCC IR3_Dst ***
7166632-ATATATATA-A,ATATTT 7298591-ATATATATA-A,ATATTT ***
7709602-C-A 7841561-C-A ***
13530079-CAAAAAAA-C,CAAAAAA 11374403-CAAAAAAA-C,CAAAAAA 24×A***
13923557-AA-A,AT 11802851-AA-A,AT ***
12297447-A-ATG,ATGTATATATATATATATA ***
14926487-AAG-A,AA 12814552-AAG-A,AA ***
17239320-ATATATT-A 15127440-ATATATT-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.