Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > ZZ12 > Z46512 > FGC78762 > ZZ19 > Z31644 > Z42772 > 8742535-G-GT > A431 > BY19161 > BY164509 > BY166389

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRKane-BY3
15799175-T-C 13687295-T-C YY+
13351008-A-T 11195332-A-T +
13726489-A-T 11570813-A-T +
24924132-C-CT 22777985-C-CT g1 11×T+
58876451-A-T 56714420-T-A +
58876479-T-C 56714392-A-G +
22475774-A-C 20313888-A-C DYZ19 +
13464951-A-T 11309275-A-T +
56756769-T-C +
13465117-C-G 11309441-C-G +
13351058-G-A 11195382-G-A +
24491020-T-A 22344873-T-A +
13464964-C-A 11309288-C-A +
13730729-G-C 11575053-G-C +
8644324-C-CAAA 8776283-C-CAAA 32×A+
10604574-A-C +
10756744-CAAT-C +
10756748-CG-C +
13351055-T-C 11195379-T-C +
13464946-G-A 11309270-G-A +
13468379-G-GTTAATT 11312703-G-GTTAATT +
15799167-CCT-C 13687287-CCT-C +
17505050-C-G 15393170-C-G Y+
18088987-G-A 15977107-G-A FTB543 Y+
21503900-C-T 19342014-C-T FTB1054 YY+
22287672-C-T 20125786-C-T DYZ19 +
28369591-G-A 26223444-G-A P1_gr2 +
28390820-GA-G 26244673-GA-G P1_gr2 10×A*
13483437-C-T 11327761-C-T F18186 *
27861040-GT-G 25714893-GT-G P1_Y2 17×T*
24216950-G-GA 22070803-G-GA P3_b1 9×A*
59002952-T-C 56856805-T-C *
2945865-C-A 3077824-C-A *
5415500-T-C 5547459-T-C FGC69280 *
5554844-C-T 5686803-C-T *
5564088-A-G 5696047-A-G *
5674390-C-T 5806349-C-T *
9340732-AAC-A 9503123-AAC-A 15×AC*
13322480-A-T 11166804-A-T *
13337012-G-A 11181336-G-A *
9345062-T-G 9507453-T-G Y*
3404731-GA-G 3536690-GA-G 11×A*
13729102-T-A 11573426-T-A *
13371180-A-G 11215504-A-G *
13374134-C-T 11218458-C-T *
13688492-G-A 11532816-G-A *
13712874-G-C 11557198-G-C *
58883734-A-T 56707137-T-A *
9963288-T-A 10125679-T-A Y*
6765641-T-G 6897600-T-G YY*
28802749-A-G 26656602-A-G *
13488325-G-A 11332649-G-A BY86202 *
59006962-TA-T 56860815-TA-T 8×A*
22437307-T-G 20275421-T-G FGC23198A14651 DYZ19 *
22437308-A-T 20275422-A-T FGC23198A14652 DYZ19 *
4324851-T-A 4456810-T-A *
22490628-G-A 20328742-G-A DYZ19 *
27482837-AT-A 25336690-AT-A P1_Y2 16×T*
10022394-T-C 10184785-T-C Y*
58883953-G-A 56706918-C-T *
13688208-A-AATGGC 11532532-A-AATGGC *
13257268-GATATAT-G 11101592-GATATAT-G 11×AT*
13489023-GGCC-G 11333347-GGCC-G *
13485598-G-T 11329922-G-T *
13489597-C-A 11333921-C-A *
19513578-ATTTT-A,ATTT 17401698-ATTTT-A,ATTT 20×T*
13485725-G-A 11330049-G-A *
13485728-G-T 11330052-G-T *
13487917-G-T 11332241-G-T BY86190 *
13485743-A-T 11330067-A-T *
13485538-A-T 11329862-A-T *
28706244-GTTT-G 26560097-GTTT-G 13×T*
56763547-T-C *
24427882-G-GTT 22281735-G-GTT 14×T*
21362542-G-GAA 19200656-G-GAA 13×A*
23037259-A-T 20875373-A-T YY*
13489056-C-T 11333380-C-T *
18865902-CA-C 16754022-CA-C 8×A*
58883562-C-G 56707309-G-C *
5506616-T-C 5638575-T-C FGC69297 *
3402559-A-T 3534518-A-T *
5667346-T-G 5799305-T-G *
2945859-T-C 3077818-T-C *
28812293-G-A 26666146-G-A *
13483389-A-G 11327713-A-G *
56756959-G-C *
21167076-G-GAA 19005190-G-GAA 14×A*
24343525-T-G 22197378-T-G P3_t1 *
7338358-C-A 7470317-C-A Y*
13468289-C-A 11312613-C-A *
6074688-ATGTGTG-A 6206647-ATGTGTG-A 22×TG*
3512413-G-A 3644372-G-A *
5268356-A-G 5400315-A-G *
58905297-A-T 56685574-T-A *
23431379-CA-C 21269493-CA-C 8×A*
15631570-G-T 13519690-G-T Y*
13733981-G-T 11578305-G-T *
13620448-TAA-T 11464772-TAA-T 14×A*
13477305-C-T 11321629-C-T *
22065899-GTT-G 19904013-GTT-G 12×T*
18679925-CAA-C,CAAA 16568045-CAA-C,CAAA 25×A*
13472514-C-A 11316838-C-A *
13462140-C-T 11306464-C-T *
24472421-GT-G,GTTT 22326274-GT-G,GTTT 25×T*
2758842-CA-C,CAA 2890801-CA-C,CAA 19×A*
4158596-CTTTT-C 4290555-CTTTT-C 17×T*
13489105-C-T 11333429-C-T *
13489067-C-A 11333391-C-A *
13483407-T-G 11327731-T-G *
13489685-C-CTT 11334009-C-CTT *
3394337-CTT-C,CTTT 3526296-CTT-C,CTTT 21×T*
5665577-T-A 5797536-T-A FGC69286 *
10022375-G-A 10184766-G-A Y*
13374144-T-C 11218468-T-C *
13374158-C-A 11218482-C-A *
13688939-T-A 11533263-T-A FT128116FT448504 *
13487328-C-T 11331652-C-T *
10022398-T-C 10184789-T-C Y*
9940532-TC-T 10102923-TC-T *
13347531-T-C 11191855-T-C *
13476570-C-A 11320894-C-A *
56878290-C-A *
17592345-CTTT-C,CTT 15480465-CTTT-C,CTT 24×T*
13476602-C-T 11320926-C-T *
20835454-A-C 18673568-A-C P4_Gap *
13470007-G-T 11314331-G-T *
13489630-CA-C 11333954-CA-C *
13470035-C-T 11314359-C-T *
13479233-T-A 11323557-T-A *
15733879-CAA-C,CA 13621999-CAA-C,CA 25×A*
13583827-T-A 11428151-T-A *
13965269-CAA-C,CA 11844563-CAA-C,CA 21×A*
14493084-C-G 12381281-C-G Y*
4402320-G-C 4534279-G-C *
6885421-A-C 7017380-A-C YY*
19604809-CAAAAA-C 17492929-CAAAAA-C P5_Prx 19×A*
5486876-CA-C,CAA 5618835-CA-C,CAA 21×A*
59007432-CT-C,CTT 56861285-CT-C,CTT 18×T*
9303220-A-C 9465611-A-C Y*
13472027-CAT-C 11316351-CAT-C *
13472033-G-GAA 11316357-G-GAA *
28813084-G-T 26666937-G-T BY55623 *
13351944-A-T 11196268-A-T *
13404483-C-T 11248807-C-T *
13404503-T-A 11248827-T-A *
13462111-G-C 11306435-G-C *
13479027-C-T 11323351-C-T *
13462123-G-C 11306447-G-C FT443916 *
13462128-A-C 11306452-A-C *
13462129-G-T 11306453-G-T *
13465071-G-A 11309395-G-A *
13472470-C-CCG 11316794-C-CCG *
13472475-CCT-C 11316799-CCT-C *
13489566-GC-G 11333890-GC-G *
13497585-T-C 11341909-T-C *
13497593-C-G 11341917-C-G *
13269588-CAAAA-C 11113912-CAAAA-C *
13275143-T-C 11119467-T-C *
13476613-G-T 11320937-G-T *
13469985-G-T 11314309-G-T *
19206934-TTATATA-T 17095054-TTATATA-T 10×TA*
28799813-GCA-G 26653666-GCA-G *
13705519-TGGAA-T 11549843-TGGAA-T *
22220565-G-A 20058679-G-A DYZ19 *
13461914-G-C 11306238-G-C *
13583816-G-T 11428140-G-T *
13470030-G-A 11314354-G-A *
11333967-C- *
56822441-G-A *
27633662-T-G 25487515-T-G P1_Y2 *
3730894-CT-C 3862853-CT-C 8×T*
9476421-TA-T 9638812-TA-T 9×A*
22220555-C-A 20058669-C-A DYZ19 *
8776547-CTTTTT-C,CTTTT 8908506-CTTTTT-C,CTTTT 24×T*
13483366-C-A 11327690-C-A *
11306156-A- *
13470470-G-A 11314794-G-A *
13470482-G-C 11314806-G-C *
13489027-T-A 11333351-T-A *
7485256-CTT-C,CT 7617215-CTT-C,CT IR1_L 23×T*
28818288-A-G 26672141-A-G *
13699187-C-G 11543511-C-G *
13692959-G-C 11537283-G-C *
13348795-CT-C 11193119-CT-C 9×T*
13470026-A-G 11314350-A-G *
3271453-T-G 3403412-T-G *
3715009-ACAC- *
3758500-A-G 3890459-A-G *
4385368-T-G 4517327-T-G *
4402321-G-C 4534280-G-C *
4471225-C-T 4603184-C-T *
4471229-G-T 4603188-G-T *
4471259-A-G 4603218-A-G *
5706360-G-C 5838319-G-C *
5776576-GA-G,GAA 5908535-GA-G,GAA 13×A*
6020688-G-GTTTTTTTT 6152647-G-GTTTTTTTT 23×T*
6105263-C-CTA 6237222-C-CTA *
6213805-A-G 6345764-A-G IR3_Dst *
8158880-T- *
8723874-A-C 8855833-A-C YY*
8907671-A-G 9039630-A-G *
9297652-GTCT-G 9460043-GTCT-G *
9303244-T-A 9465635-T-A Y*
9508531-C-CT,CT 9670922-C-CT,CT 25×T*
9942076-A-T 10104467-A-T Y*
10019770-G-A 10182161-G-A Y*
10019772-G-A 10182163-G-A Y*
10019774-TTC-T 10182165-TTC-T *
10019778-T-TGC 10182169-T-TGC *
10019788-C-T 10182179-C-T Y*
10022452-C-G 10184843-C-G Y*
10748004-GCCATTCCATT-G,G *
11007796-T-C *
11034818-C-T *
13223265-AGG-A 11067589-AGG-A *
13239513-CTTT-C 11083837-CTTT-C 17×T*
13242241-CT-C,CTTTT 11086565-CT-C,CTTTT 21×T*
13261133-G-A 11105457-G-A *
13275871-CT-C 11120195-CT-C *
13398218-C-G 11242542-C-G *
13411533-G-A 11255857-G-A *
13449956-C-CCATA 11294280-C-CCATA *
11306154-G- *
11306581-C- *
13463296-C-A 11307620-C-A *
13464984-G-A 11309308-G-A *
13465094-C-T 11309418-C-T *
13468281-TG-T 11312605-TG-T *
13468288-T-C 11312612-T-C *
13470048-G-C 11314372-G-C *
13470428-G-C 11314752-G-C *
13470429-G-A 11314753-G-A *
13470437-C-G 11314761-C-G *
13470464-C-A 11314788-C-A *
11316801-T- *
13472515-C-A 11316839-C-A *
13472523-T-TC 11316847-T-TC *
13476877-G-T 11321201-G-T *
13479003-G-C 11323327-G-C *
13479017-A-C 11323341-A-C *
13483313-C-G 11327637-C-G *
13483393-T-C 11327717-T-C *
13483435-C-T 11327759-C-T *
13485745-G-T 11330069-G-T *
13487304-T-C 11331628-T-C *
13487325-C-G 11331649-C-G *
13487930-C-A 11332254-C-A *
13488772-G-A,T 11333096-G-A,T *
13488948-G-A 11333272-G-A *
11333349-C- *
11333963-C- *
11333964-C- *
11333965-C- *
11333968-G- *
13489925-C-G 11334249-C-G *
11556892-A- *
11567235-T- *
13733970-T-C 11578294-T-C *
14200742-TTAGATAGA-T,T 12080036-TTAGATAGA-T,T 15×TAGA*
14203430-CA-C,CAA 12082724-CA-C,CAA 23×A*
14331157-GC-G 12210451-GC-G *
14493083-A-G 12381280-A-G Y*
12736980-T- *
15566817-GA-G,GAA 13454937-GA-G,GAA 22×A*
16002201-A-G 13890321-A-G Y*
16002652-G-A 13890772-G-A Y*
14544779-T- *
16710246-T-C 14598366-T-C YY*
16727341-T-G 14615461-T-G Y*
16779007-G-GA,GA 14667127-G-GA,GA 10×A*
17170490-C-T 15058610-C-T YY*
18874586-A-T 16762706-A-T Y*
19398000-A-C 17286120-A-C YY*
19753954-ATTT-A 17642074-ATTT-A P5_Prx 15×T*
20105742-TTATC-T,T 17993862-TTATC-T,T P5_Dst 14×TATC*
20835451-A-AC 18673565-A-AC P4_Gap *
20835458-T-G 18673572-T-G P4_Gap *
21580356-C-T 19418470-C-T Y*
21961672-T-C 19799786-T-C YY*
21964539-T-C 19802653-T-C Y*
21980001-CAAAA-C,CAAA 19818115-CAAAA-C,CAAA 27×A*
22288258-A-G 20126372-A-G DYZ19 *
22448556-T-A 20286670-T-A DYZ19 *
22463964-A-T 20302078-A-T DYZ19 *
22509201-G-A 20347315-G-A DYZ19 *
22509253-C-G 20347367-C-G DYZ19 *
22512471-C-A 20350585-C-A DYZ19 *
22914674-CAAAAAA-C,CAAAA 20752788-CAAAAAA-C,CAAAA 27×A*
23540216-C-T 21378330-C-T YY*
23540295-AG-A 21378409-AG-A *
23759113-TAAAAA-T,TAAA 21597227-TAAAAA-T,TAAA 24×A*
24107663-CAAA-C 21961516-CAAA-C P3_b1 18×A*
24491649-A-T 22345502-A-T *
26314532-A-C 24168385-A-C P1_Y1 *
24179061-G- P1_Y1 *
56685560-G-A *
56685591-G-C *
56706962-TG-T *
56706965-AATGG-A *
56706989-G-C *
56756806-C-G *
56756956-A-C *
56827755-A- *
56831904-A- *
56850261-G-C *

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.