Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > M170[I] > Z2647 > L460 > Z2624 > CTS595 > S21825

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
IN67617
hg19:Y:3373380-T-A hg38:Y:3505339-T-A A+
hg19:Y:58980622-T-C hg38:Y:56834475-T-C A*
hg19:Y:58980637-T-C hg38:Y:56834490-T-C A*
hg19:Y:16107442-G-GT hg38:Y:13995562-G-GT P8_Prx 30×TA*
hg19:Y:13448252-C-T hg38:Y:11292576-C-T A*
hg19:Y:13448277-C-T hg38:Y:11292601-C-T A*
hg19:Y:13450439-C-A hg38:Y:11294763-C-A A*
hg19:Y:18324932-C-A hg38:Y:16213052-C-A P6_Prx A*
hg19:Y:13451763-T-C hg38:Y:11296087-T-C A*
hg19:Y:20677060-C-A hg38:Y:18515174-C-A P4_Prx A*
hg19:Y:13447734-C-A hg38:Y:11292058-C-A A*
hg19:Y:28817880-T-C hg38:Y:26671733-T-C A*
hg38:Y:10849668-C-A A*
hg19:Y:13687300-T-A hg38:Y:11531624-T-A DYZ17 A*
hg19:Y:13450946-C-T hg38:Y:11295270-C-T A*
hg38:Y:56830148-C-T A*
hg38:Y:56832838-C-A A*
hg38:Y:56836686-A-G A*
hg19:Y:13448296-A-T hg38:Y:11292620-A-T A*
hg38:Y:56835914-C-T A*
hg38:Y:10849673-C-A A*
hg19:Y:6151238-T-G hg38:Y:6283197-T-G IR3_Dst A*
hg19:Y:6387601-G-A hg38:Y:6519560-G-A A*
hg19:Y:13447939-T-C hg38:Y:11292263-T-C A*
hg19:Y:13449237-C-T hg38:Y:11293561-C-T A*
hg19:Y:17951464-T-A hg38:Y:15839584-T-A YYA*
hg19:Y:19832895-G-C hg38:Y:17721015-G-C P5_Prx A*
hg19:Y:20634335-C-T hg38:Y:18472449-C-T P4_Prx A*
hg19:Y:22968969-A-C hg38:Y:20807083-A-C YYA*
hg19:Y:24300230-C-T hg38:Y:22154083-C-T P3_t1 A*
hg19:Y:25875934-C-G hg38:Y:23729787-C-G P1_Y1 A*
hg19:Y:25883259-T-C hg38:Y:23737112-T-C P1_Y1 A*
hg19:Y:25964845-C-T hg38:Y:23818698-C-T P1_Y1 A*
hg19:Y:25980951-C-T hg38:Y:23834804-C-T P1_Y1 A*
hg19:Y:26116266-C-T hg38:Y:23970119-C-T P1_Y1 A*
hg19:Y:26210434-G-T hg38:Y:24064287-G-T P1_Y1 A*
hg19:Y:26514912-G-GTC hg38:Y:24368765-G-GTC P1_Y1 10×TCA*
hg19:Y:28816645-A-T hg38:Y:26670498-A-T A*
hg19:Y:28817006-T-A hg38:Y:26670859-T-A A*
hg38:Y:56833417-T-C A*
hg19:Y:22651621-C-T hg38:Y:20489735-C-T BY19228FGC46562 YY+
hg19:Y:22230793-A-G hg38:Y:20068907-A-G BY213441 DYZ19 +
hg19:Y:18945748-C-T hg38:Y:16833868-C-T S18632S21514 YY+
hg19:Y:18060097-C-T hg38:Y:15948217-C-T Y19070 YY+
hg38:Y:10983919-C-G FT310261 +
hg19:Y:17405580-C-T hg38:Y:15293700-C-T A8690 YY+
hg19:Y:16042713-A-G hg38:Y:13930833-A-G Y19067 YY+
hg38:Y:10773384-T-C FT430585 +
hg19:Y:16007795-G-A hg38:Y:13895915-G-A Y19482 Y+
hg19:Y:4905542-G-A hg38:Y:5037501-G-A FT308260 +
hg19:Y:3844725-C-T hg38:Y:3976684-C-T FT308081 +
hg19:Y:3992778-A-C hg38:Y:4124737-A-C FT308107 +
hg19:Y:4186294-C-T hg38:Y:4318253-C-T FT308151 +
hg19:Y:4247605-G-A hg38:Y:4379564-G-A FT308159 +
hg19:Y:4465540-AG-A hg38:Y:4597499-AG-A +
hg19:Y:4985050-TAG-T hg38:Y:5117009-TAG-T +
hg19:Y:5379669-G-A hg38:Y:5511628-G-A FT308328 +
hg19:Y:5418516-G-A hg38:Y:5550475-G-A FT308337 +
hg19:Y:5462259-T-C hg38:Y:5594218-T-C FT308344 +
hg19:Y:5700150-A-G hg38:Y:5832109-A-G FT308376 +
hg19:Y:5993661-G-A hg38:Y:6125620-G-A FT28648 +
hg19:Y:6603114-T-A hg38:Y:6735073-T-A FT308488 +
hg19:Y:6685137-A-G hg38:Y:6817096-A-G FT308498 Y+
hg19:Y:6860189-C-T hg38:Y:6992148-C-T YY+
hg19:Y:7189588-A-G hg38:Y:7321547-A-G YY+
hg19:Y:7600765-G-A hg38:Y:7732724-G-A YY+
hg19:Y:7701218-C-T hg38:Y:7833177-C-T YY+
hg19:Y:7725292-A-G hg38:Y:7857251-A-G FT308648 YY+
hg19:Y:7736168-A-G hg38:Y:7868127-A-G BY67216 YY+
hg19:Y:7779201-G-T hg38:Y:7911160-G-T FT308659 YY+
hg19:Y:7815159-T-A hg38:Y:7947118-T-A FT308665 YY+
hg19:Y:7850168-C-T hg38:Y:7982127-C-T FT276564 YY+
hg19:Y:8200994-A-G hg38:Y:8332953-A-G FT308707 YY+
hg19:Y:8358892-C-T hg38:Y:8490851-C-T YY+
hg19:Y:8490143-G-A hg38:Y:8622102-G-A YY+
hg19:Y:8557235-A-G hg38:Y:8689194-A-G YY+
hg19:Y:8739045-G-A hg38:Y:8871004-G-A FT308787 YY+
hg19:Y:9471432-G-A hg38:Y:9633823-G-A BY33145 +
hg38:Y:10840968-GTTCCATTCCACTCCC-G +
hg38:Y:10841399-C-T FT421490 +
hg38:Y:10912254-A-C FT310262 +
hg38:Y:10975387-A-T FT421491 +
hg19:Y:13195279-C-T hg38:Y:11039603-C-T BY33149 +
hg19:Y:13220863-G-A hg38:Y:11065187-G-A FT441154 +
hg19:Y:13247566-A-T hg38:Y:11091890-A-T FT421492 +
hg19:Y:13434461-G-A hg38:Y:11278785-G-A BY85318 +
hg19:Y:13655873-A-G hg38:Y:11500197-A-G DYZ17 +
hg38:Y:11672438-G-T FT310260 DYZ17 +
hg19:Y:13865405-G-A hg38:Y:11744699-G-A FT269740 DYZ17 +
hg19:Y:13871420-C-G hg38:Y:11750714-C-G FT308913 Y+
hg19:Y:14080950-T-G hg38:Y:11960244-T-G FT308965 YY+
hg19:Y:14082602-C-A hg38:Y:11961896-C-A YY+
hg19:Y:14181819-C-A hg38:Y:12061113-C-A FT308984 Y+
hg19:Y:14192166-T-A hg38:Y:12071460-T-A YY+
hg19:Y:14227994-C-T hg38:Y:12107288-C-T YY+
hg19:Y:14338893-T-C hg38:Y:12218188-T-C FT309024 YY+
hg19:Y:14399339-T-G hg38:Y:12278636-T-G BY33155 YY+
hg19:Y:14469608-T-A hg38:Y:12348877-T-A FT309050 YY+
hg19:Y:14713121-T-C hg38:Y:12601188-T-C YY+
hg19:Y:14717361-T-C hg38:Y:12605429-T-C FT309082 Y+
hg19:Y:14761071-CATCA-C hg38:Y:12649140-CATCA-C +
hg19:Y:14780399-G-A hg38:Y:12668469-G-A BY190620 YY+
hg19:Y:14891300-G-T hg38:Y:12779366-G-T YY+
hg19:Y:14907218-G-A hg38:Y:12795285-G-A FT309102 YY+
hg19:Y:15453152-T-C hg38:Y:13341272-T-C YY+
hg19:Y:15704204-T-C hg38:Y:13592324-T-C YY+
hg19:Y:15973198-T-TA hg38:Y:13861318-T-TA +
hg19:Y:16174570-C-T hg38:Y:14062690-C-T FT309247 Y+
hg19:Y:16345812-A-T hg38:Y:14233932-A-T YY+
hg19:Y:16415063-G-A hg38:Y:14303183-G-A FT309286 YY+
hg19:Y:16731590-T-C hg38:Y:14619710-T-C YY+
hg19:Y:16764621-T-C hg38:Y:14652741-T-C FT309344 YY+
hg19:Y:17000147-C-A hg38:Y:14888267-C-A FT309376 Y+
hg19:Y:17133905-C-T hg38:Y:15022025-C-T YY+
hg19:Y:17217184-T-C hg38:Y:15105304-T-C FT309398 YY+
hg19:Y:17321493-A-G hg38:Y:15209613-A-G YY+
hg19:Y:17532763-T-TA hg38:Y:15420883-T-TA +
hg19:Y:17775571-C-T hg38:Y:15663691-C-T FT309482 Y+
hg19:Y:17821351-T-C hg38:Y:15709471-T-C YY+
hg19:Y:18175577-C-T hg38:Y:16063697-C-T FT309561 YY+
hg19:Y:18386803-CATT-C hg38:Y:16274923-CATT-C P6_Gap +
hg19:Y:18556401-G-A hg38:Y:16444521-G-A YY+
hg19:Y:18930242-C-A hg38:Y:16818362-C-A FT309647 YY+
hg19:Y:19156680-TC-T hg38:Y:17044800-TC-T +
hg19:Y:19474929-G-A hg38:Y:17363049-G-A YY+
hg19:Y:19534777-T-G hg38:Y:17422897-T-G YY+
hg19:Y:20831392-TG-T hg38:Y:18669506-TG-T P4_Gap +
hg19:Y:21085848-T-C hg38:Y:18923962-T-C FT10590 YY+
hg19:Y:21106873-A-G hg38:Y:18944987-A-G YY+
hg19:Y:21284525-TA-T hg38:Y:19122639-TA-T +
hg19:Y:21364203-G-A hg38:Y:19202317-G-A FT309801 YY+
hg19:Y:21763179-C-G hg38:Y:19601293-C-G YY+
hg19:Y:21898241-C-T hg38:Y:19736355-C-T YY+
hg19:Y:22018409-T-C hg38:Y:19856523-T-C YY+
hg19:Y:22445475-A-G hg38:Y:20283589-A-G BY33179 DYZ19 +
hg19:Y:22458414-A-T hg38:Y:20296528-A-T BY33180 DYZ19 +
hg19:Y:22475965-T-A hg38:Y:20314079-T-A BY33184 DYZ19 +
hg19:Y:22581569-G-C hg38:Y:20419683-G-C YY+
hg19:Y:22597921-C-T hg38:Y:20436035-C-T BY139392 YY+
hg19:Y:22605927-T-C hg38:Y:20444041-T-C FT309942 YY+
hg19:Y:23145108-A-G hg38:Y:20983222-A-G YY+
hg19:Y:23151544-C-A hg38:Y:20989658-C-A YY+
hg19:Y:23406770-G-A hg38:Y:21244884-G-A FT310063 YY+
hg19:Y:23442124-C-G hg38:Y:21280238-C-G FT310066 Y+
hg19:Y:23473738-C-A hg38:Y:21311852-C-A YY+
hg19:Y:24387281-A-G hg38:Y:22241134-A-G FT310133 +
hg19:Y:24492250-C-T hg38:Y:22346103-C-T +
hg19:Y:28707017-T-G hg38:Y:26560870-T-G Y+
hg38:Y2:18191-G-T +
hg38:Y:10869933-T-TTTCCA *
hg38:Y:10899053-T-C *
hg19:Y:23730374-TTGTGTG-T hg38:Y:21568488-TTGTGTG-T 14×TG*
hg19:Y:9403180-GTATACATATACA-G,GTGTATACATATACA hg38:Y:9565571-GTATACATATACA-G,GTGTATACATATACA *
hg19:Y:9403196-ATATG-A hg38:Y:9565587-ATATG-A *
hg38:Y:10671225-C-T *
hg38:Y:10678925-A-ACCATTCCATT *
hg19:Y:14107246-G-A hg38:Y:11986540-G-A FT418050 Y*
hg19:Y:7646930-T-A hg38:Y:7778889-T-A BY13593 Y19291A2368 **
hg19:Y:21562329-TA-T hg38:Y:19400443-TA-T 9×A**
hg19:Y:17945431-AT-A hg38:Y:15833551-AT-A 10×T**
hg19:Y:22241543-A-G hg38:Y:20079657-A-G DYZ19 **
hg19:Y:7373485-C-T hg38:Y:7505444-C-T **
hg19:Y:26293500-AC-A hg38:Y:24147353-AC-A P1_Y1 **
hg38:Y:10771899-ACCATTCCATT-A **
hg19:Y:15834759-G-T hg38:Y:13722879-G-T **
hg19:Y:2938115-T-TA hg38:Y:3070074-T-TA **
hg19:Y:3040721-T-A hg38:Y:3172680-T-A **
hg19:Y:3597666-T-C hg38:Y:3729625-T-C **
hg19:Y:4675231-A-G hg38:Y:4807190-A-G **
hg19:Y:6141383-TC-T hg38:Y:6273342-TC-T IR3_Dst **
hg19:Y:7132650-A-G hg38:Y:7264609-A-G **
hg19:Y:8070077-C-G hg38:Y:8202036-C-G **
hg19:Y:8095651-T-C hg38:Y:8227610-T-C **
hg19:Y:8666734-T-G hg38:Y:8798693-T-G **
hg19:Y:8813085-C-T hg38:Y:8945044-C-T **
hg19:Y:9916514-T-C hg38:Y:10078905-T-C **
hg19:Y:9916529-G-C hg38:Y:10078920-G-C **
hg19:Y:9916533-G-A hg38:Y:10078924-G-A **
hg19:Y:9916539-A-T hg38:Y:10078930-A-T **
hg19:Y:9916549-A-T hg38:Y:10078940-A-T **
hg19:Y:9916551-T-C hg38:Y:10078942-T-C **
hg19:Y:9916556-G-T hg38:Y:10078947-G-T **
hg19:Y:9916562-A-T hg38:Y:10078953-A-T **
hg19:Y:9916564-G-C hg38:Y:10078955-G-C **
hg19:Y:13521176-C-G hg38:Y:11365500-C-G **
hg19:Y:13707523-G-C hg38:Y:11551847-G-C BY33153 DYZ17 **
hg19:Y:13965037-G-A hg38:Y:11844331-G-A **
hg19:Y:14415585-T-C hg38:Y:12294882-T-C **
hg19:Y:15835227-A-T hg38:Y:13723347-A-T **
hg19:Y:17859559-T-C hg38:Y:15747679-T-C **
hg19:Y:21392524-T-C hg38:Y:19230638-T-C **
hg19:Y:21477781-G-A hg38:Y:19315895-G-A **
hg19:Y:22459809-T-C hg38:Y:20297923-T-C DYZ19 **
hg19:Y:23272303-TTC-T hg38:Y:21110417-TTC-T **
hg19:Y:28057414-A-G hg38:Y:25911267-A-G P1_Y2 **
hg19:Y:13852026-G-A hg38:Y:11731320-G-A DYZ17 ***
hg19:Y:18028704-CATACAATACA-C hg38:Y:15916824-CATACAATACA-C 12×ATACA***
hg19:Y:14097945-ATTTTT-A hg38:Y:11977239-ATTTTT-A 23×T***
hg19:Y:9771054-ATT-A,ATTT hg38:Y:9933445-ATT-A,ATTT 16×T***
hg38:Y:13045947-CAAAAA-C 20×A***
hg19:Y:22598745-C-CAA hg38:Y:20436859-C-CAA 15×A***
hg19:Y:3511839-GT-G hg38:Y:3643798-GT-G 10×T***
hg19:Y:16330151-AT-A hg38:Y:14218271-AT-A 10×T***
hg19:Y:14604617-C-A hg38:Y:12492819-C-A ***
hg19:Y:13707495-G-A hg38:Y:11551819-G-A FT449273 DYZ17 ***
hg19:Y:18833473-A-AT hg38:Y:16721593-A-AT 9×T***
hg19:Y:21328191-T-C hg38:Y:19166305-T-C ***
hg19:Y:6734680-CTTTTTT-C,CTTTTT hg38:Y:6866639-CTTTTTT-C,CTTTTT 21×T***
hg19:Y:8431228-CT-C,CTT hg38:Y:8563187-CT-C,CTT 17×T***
hg19:Y:22974116-CAAAAAA-C,CAAAA hg38:Y:20812230-CAAAAAA-C,CAAAA 24×A***
hg19:Y:18688514-A-AC hg38:Y:16576634-A-AC ***
hg19:Y:28581676-C-T hg38:Y:26435529-C-T ***
hg19:Y:4207957-CAAAAA-C hg38:Y:4339916-CAAAAA-C 22×A***
hg19:Y:4583115-CTTTTTT-C hg38:Y:4715074-CTTTTTT-C 22×T***
hg19:Y:4794855-CTTTTTT-C hg38:Y:4926814-CTTTTTT-C 21×T***
hg19:Y:5273214-CTT-C,CT hg38:Y:5405173-CTT-C,CT 23×T***
hg19:Y:5008883-A-ATT hg38:Y:5140842-A-ATT 13×T***
hg19:Y:15164640-C-T hg38:Y:13052726-C-T ***
hg19:Y:5492439-CT-C,CTT hg38:Y:5624398-CT-C,CTT 18×T***
hg19:Y:28464901-CTTT-C hg38:Y:26318754-CTTT-C 15×T***
hg19:Y:15164642-C-T hg38:Y:13052728-C-T ***
hg19:Y:2814748-A-G hg38:Y:2946707-A-G ***
hg19:Y:2835607-CT-C,CTTT hg38:Y:2967566-CT-C,CTTT 16×T***
hg19:Y:3700107-TAAA-T,TA hg38:Y:3832066-TAAA-T,TA 15×A***
hg19:Y:3963800-C-A hg38:Y:4095759-C-A ***
hg19:Y:4164385-T-C hg38:Y:4296344-T-C ***
hg19:Y:4373606-CTT-C,CTTT hg38:Y:4505565-CTT-C,CTTT 14×T***
hg19:Y:5088866-T-A hg38:Y:5220825-T-A ***
hg19:Y:5803806-T-G hg38:Y:5935765-T-G ***
hg19:Y:6586850-G-T hg38:Y:6718809-G-T ***
hg19:Y:8688552-A-G hg38:Y:8820511-A-G ***
hg19:Y:9375514-T-C hg38:Y:9537905-T-C ***
hg19:Y:9949374-T-C hg38:Y:10111765-T-C ***
hg38:Y:10761260-T-TTTCCATTCCATTCCA ***
hg19:Y:13930171-CAAAAAAAA-C,CAAAAAAAAA hg38:Y:11809465-CAAAAAAAA-C,CAAAAAAAAA 21×A***
hg19:Y:13931739-CTTT-C,CT hg38:Y:11811033-CTTT-C,CT 22×T***
hg19:Y:14266303-GTGTATA-G,GTATA hg38:Y:12145597-GTGTATA-G,GTATA ***
hg19:Y:14658236-A-T hg38:Y:12546301-A-T ***
hg19:Y:14986914-A-G hg38:Y:12874980-A-G ***
hg19:Y:15462650-A-G hg38:Y:13350770-A-G ***
hg19:Y:15969972-A-G hg38:Y:13858092-A-G ***
hg19:Y:16490082-T-TCGA hg38:Y:14378202-T-TCGA ***
hg19:Y:16784346-A-G hg38:Y:14672466-A-G ***
hg19:Y:17124165-A-G hg38:Y:15012285-A-G ***
hg19:Y:17355510-GAA-G,GA hg38:Y:15243630-GAA-G,GA 12×A***
hg19:Y:17484837-T-A hg38:Y:15372957-T-A ***
hg19:Y:17626629-G-A hg38:Y:15514749-G-A ***
hg19:Y:17923860-A-G hg38:Y:15811980-A-G ***
hg19:Y:21824255-CAAAAAAAAAAAAAA-C hg38:Y:19662369-CAAAAAAAAAAAAAA-C 30×A***
hg19:Y:22253650-T-C hg38:Y:20091764-T-C DYZ19 ***
hg19:Y:22661493-ATGTGTGTGTGTGTG-A,ATGTG hg38:Y:20499607-ATGTGTGTGTGTGTG-A,ATGTG 26×TG***
hg19:Y:26437196-AAGT-A hg38:Y:24291049-AAGT-A P1_Y1 ***
hg19:Y:27610009-AACACACAC-A,AAC hg38:Y:25463862-AACACACAC-A,AAC P1_Y2 21×AC***
hg19:Y:28558479-G-A hg38:Y:26412332-G-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: IN676171463303892404068199102
Used in age calculations1463303892404068199102
Counts of SNPs7061
Variant counts last updated 2025-11-30 02:46:43.



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