Tree Position

R-M269 > L23 > Z2103 > Z2106 > Z2108 > Z2110 > CTS7556 > Y5589

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
4908721-G-C 5040680-G-C A+
22222489-G-T 20060603-G-T DYZ19 A+
19803096-T-C 17691216-T-C FT452407 P5_Prx A+
18462290-T-C 16350410-T-C P6_Dst A*
25948840-C-A 23802693-C-A P1_Y1 A*
22314157-G-C 20152271-G-C DYZ19 A*
18011029-G-T 15899149-G-T P7_Dst YA*
20785711-G-A 18623825-G-A P4_Prx A*
22232114-C-G 20070228-C-G DYZ19 A*
13478684-A-C 11323008-A-C A*
13463182-G-A 11307506-G-A A*
10868831-T-A A*
10868832-T-C A*
10868843-C-CACTTG A*
3528037-T-G 3659996-T-G A*
56833733-C-T A*
20492878-T-TC 18330992-T-TC P5_Dst 9×CA*
20535384-T-TA 18373498-T-TA P5_Dst 10×AA*
5035498-A-G 5167457-A-G A*
13463291-C-G 11307615-C-G A*
19695012-A-AT 17583132-A-AT P5_Prx 23×TA*
26421474-C-CTG 24275327-C-CTG P1_Y1 24×TGA*
28802631-C-A 26656484-C-A A*
56837158-G-T A*
56825677-A-C A*
20774626-A-C 18612740-A-C P4_Prx A*
20725077-A-G 18563191-A-G P4_Prx A*
13705349-T-C 11549673-T-C BY89158 A*
18321864-A-C 16209984-A-C P6_Prx A*
18346809-A-G 16234929-A-G P6_Prx A*
18363835-A-T 16251955-A-T P6_Prx A*
16150095-C-CT 14038215-C-CT P8_Dst 22×TA*
13449450-C-G 11293774-C-G A*
13463953-C-CCCGA 11308277-C-CCCGA A*
4328695-G-A 4460654-G-A A*
24273567-T-C 22127420-T-C P3_b1 A*
5591951-C-T 5723910-C-T FT324412 A*
24270438-C-T 22124291-C-T P3_b1 A*
26396860-A-T 24250713-A-T P1_Y1 A*
6162482-C-T 6294441-C-T IR3_Dst A*
19401599-T-TA 17289719-T-TA 11×AA*
3376998-T-A 3508957-T-A A*
15584285-T-TA 13472405-T-TA 12×AA*
26208350-A-G 24062203-A-G P1_Y1 A*
7476313-A-T 7608272-A-T IR1_L A*
9045383-G-A 9207774-G-A Y64760 Y+
16927057-C-T 14815177-C-T FT163585 YY+
8630125-G-A 8762084-G-A FT162939 YY+
17054303-T-C 14942423-T-C FT163609 YY+
9109777-A-G FT162989 +
17142090-T-G 15030210-T-G FT163626 YY+
17481181-C-T 15369301-C-T FT163681 YY+
9518990-C-A 9681381-C-A FT163044 +
10044326-A-G 10206717-A-G FT376848 +
13894296-T-C 11773590-T-C FT163099 Y+
13910459-C-T 11789753-C-T FT163104 Y+
16016259-G-A 13904379-G-A FT163446 Y+
8475167-C-T 8607126-C-T YY+
5257434-C-T 5389393-C-T FT162468 +
8375720-T-C 8507679-T-C FT162898 YY+
7053040-C-T 7184999-C-T YY+
5754783-G-A 5886742-G-A FT162560 +
4315993-C-A 4447952-C-A FT162301 +
4252918-A-G 4384877-A-G FT162283 +
4009282-C-A 4141241-C-A FT162225 +
3834667-G-A 3966626-G-A FT162186 +
3320985-A-G 3452944-A-G FT162099 +
6506708-C-T 6638667-C-T FT162650 +
2948815-A-G 3080774-A-G FT162007 +
8369145-G-A 8501104-G-A FT162896 YY+
8122448-C-T 8254407-C-T FT162857 YY+
7528410-G-A 7660369-G-A YY+
7801150-A-G 7933109-A-G BY181186 YY+
8289581-A-G 8421540-A-G FT162880 YY+
8320294-A-G 8452253-A-G FT162884 YY+
5412527-T-C 5544486-T-C FT162493 +
16299577-T-TA 14187697-T-TA 10×A+
8358316-T-C 8490275-T-C FT162891 YY+
15726815-G-C 13614935-G-C FT163407 YY+
21551855-A-G 19389969-A-G FT164126 Y+
23139463-G-A 20977577-G-A FT164344 YY+
21812091-G-A 19650205-G-A YY+
21308595-G-T 19146709-G-T FT164085 YY+
9398673-A-G 9561064-A-G BY11860 YY+
21477201-T-C 19315315-T-C PR3259 YY+
22040786-C-T 19878900-C-T FT164210 YY+
23376653-T-C 21214767-T-C FT164378 YY+
23183809-G-T 21021923-G-T FT164354 Y+
28466362-A-T 26320215-A-T FT164462 +
19457833-C-T 17345953-C-T FT164009 YY+
19281595-G-A 17169715-G-A FT163973 YY+
15463545-A-G 13351665-A-G FT163361 YY+
22828459-T-C 20666573-T-C FT164291 YY+
14436705-A-G 12315978-A-G FGC15335FGC30243 Y+
28755140-G-A 26608993-G-A FT285206 Y+
22843974-C-G 20682088-C-G FT164294 YY+
21557727-C-T 19395841-C-T FT164129 YY+
22277002-A-G 20115116-A-G FT454712 DYZ19 *
8634381-T-TAC 8766340-T-TAC 22×AC*
10894736-A-G *
6983589-C-CTG 7115548-C-CTG 20×TG*
13478252-C-A 11322576-C-A *
8379577-C-CTG 8511536-C-CTG 18×TG*
9510732-CCTCT-C 9673123-CCTCT-C 14×CT*
13478258-A-C,G 11322582-A-C,G *
28812904-G-C 26666757-G-C *
10962910-ATCCAT-A *
18743552-T-TTCTATCTA 16631672-T-TTCTATCTA 12×TCTA*
20045279-AAAG-A 17933399-AAAG-A P5_Prx **
13628039-AT-A 11472363-AT-A **
16064382-T-C 13952502-T-C **
16146484-AAAG-A 14034604-AAAG-A P8_Dst **
20377686-GA-G 18215800-GA-G P5_Dst 13×A**
6276156-T-G 6408115-T-G IR3_Dst **
25030104-C-T 22883957-C-T g1 **
23897958-A-C 21736072-A-C **
14266305-GTATA-G 12145599-GTATA-G 14×TA**
7750796-C-CCAGGATGGT 7882755-C-CCAGGATGGT **
7750799-T-C 7882758-T-C **
15574730-CAT-C 13462850-CAT-C 8×AT**
13468883-T-G 11313207-T-G **
13468922-G-T 11313246-G-T **
5252428-T-A 5384387-T-A **
16945106-G-C 14833226-G-C **
13468913-T-G 11313237-T-G **
18480930-T-TC 16369050-T-TC P6_Dst **
13453505-A-G 11297829-A-G **
19064940-A-T 16953060-A-T **
11675236-T-G **
11675225-T-A **
11675220-T-C **
16975422-T-C 14863542-T-C **
15297284-A-AT 13185383-A-AT 27×T**
28814979-G-A 26668832-G-A **
13726383-C-T 11570707-C-T **
21839977-T-A 19678091-T-A **
22463476-G-C 20301590-G-C DYZ19 **
18316594-A-T 16204714-A-T P6_Prx **
19146569-CTT-C 17034689-CTT-C 28×T**
16683191-T-C 14571311-T-C **
4539033-TA-T 4670992-TA-T 24×A**
13468899-A-G 11313223-A-G **
3490938-G-A 3622897-G-A **
13468919-A-G 11313243-A-G **
13468934-A-C 11313258-A-C **
16783732-A-G 14671852-A-G FT128900 ***
16687712-G-C 14575832-G-C ***
22254982-C-G 20093096-C-G DYZ19 ***
23272358-C-T 21110472-C-T ***
13705291-A-T 11549615-A-T FT449103 ***
15092802-T-TA 12980890-T-TA ***
15967503-C-CT 13855623-C-CT 14×T***
10894749-C-G ***
5555645-CAA-C 5687604-CAA-C 18×A***
19318178-CT-C 17206298-CT-C 28×T***
8027667-C-CT 8159626-C-CT 11×T***
21515862-CA-C 19353976-CA-C 28×A***
27461936-T-TTGTG 25315789-T-TTGTG P1_Y2 27×TG***
4848384-G-A 4980343-G-A ***
5886198-G-T 6018157-G-T ***
3064734-G-A 3196693-G-A ***
13468975-G-T 11313299-G-T ***
13468960-T-A 11313284-T-A ***
19436764-G-GAGAAAGAA 17324884-G-GAGAAAGAA 12×AGAA***
3573338-G-A 3705297-G-A ***
24408991-ACC-A 22262844-ACC-A 14×C***
13468992-C-G 11313316-C-G ***
13468991-C-T 11313315-C-T ***
15186597-C-CA 13074683-C-CA 14×A***
13468947-T-G 11313271-T-G ***
16063171-G-GTTTCTTTC 13951291-G-GTTTCTTTC 14×TTTC***
13705275-A-T 11549599-A-T FT449101 ***
13705261-C-A 11549585-C-A ***
10894750-C-A ***
28500806-C-CTT 26354659-C-CTT 18×T***
14213715-GAGAA-G 12093009-GAGAA-G ***
4331775-T-A 4463734-T-A ***
5502038-A-G 5633997-A-G ***
21170319-GT-G,GTT 19008433-GT-G,GTT 14×T***
28797774-A-C 26651627-A-C ***
3090313-C-T 3222272-C-T ***
13478322-G-C 11322646-G-C ***
3363318-CTT-C 3495277-CTT-C 15×T***
13532875-CAA-C 11377199-CAA-C 13×A***
5520571-GA-G 5652530-GA-G 11×A***
6648613-C-CT 6780572-C-CT 27×T***
28804033-A-C 26657886-A-C ***
56850641-G-A ***
13705503-A-T 11549827-A-T ***
13468948-T-G 11313272-T-G ***
7016147-CAA-C 7148106-CAA-C 16×A***
5088451-CT-C 5220410-CT-C 27×T***
21085779-CAAA-C 18923893-CAAA-C 24×A***
7646952-C-T 7778911-C-T ***
23272354-C-T 21110468-C-T A16207 ***
17926534-CAAAA-C 15814654-CAAAA-C 25×A***
13468998-T-G 11313322-T-G ***
13489048-C-T 11333372-C-T ***
28797780-A-G 26651633-A-G BY151588 ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: IN215261513697894831408356405
Used in age calculations1513697894831408356405
Counts of SNPs3631
Variant counts last updated 2022-07-16 02:51:27.

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