Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z272 > S450 > Z295/S1217 > S25783 > CTS4065 > FGC23196 > FGC23175 > FGC32182

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRFTDNA
76755
FGC-BigY
AMLSX
8701198-T-TA 8833157-T-TA ++
13686053-G-C 11530377-G-C FGC32185 ++
15822499-A-C 13710619-A-C FGC32187 YY++
16087179-G-A 13975299-G-A FGC32188 Y++
16377909-G-A 14266029-G-A FGC32189 YY++
16438348-C-G 14326468-C-G FGC32190 YY++
24476089-T-G 22329942-T-G FGC32192 Y++
10048604-T-A 10210995-T-A **
10048682-A-C 10211073-A-C **
22220574-C-A 20058688-C-A BY52082 DYZ19 *****
27369590-G-C 25223443-G-C P1_g3 **
10048601-G-C 10210992-G-C **
10048587-A-T 10210978-A-T **
10048662-C-T 10211053-C-T **
10048615-G-T 10211006-G-T **
2758458-C-A 2890417-C-A **
3273232-G-T 3405191-G-T **
3334983-G-T 3466942-G-T **
4958377-G-T 5090336-G-T **
7008136-C-A 7140095-C-A **
8078934-C-A 8210893-C-A **
10025014-C-A 10187405-C-A **
13494140-C-A 11338464-C-A **
13597258-C-A 11441582-C-A **
14180886-C-A 12060180-C-A **
14272860-C-A 12152154-C-A **
14355254-C-A 12234549-C-A **
14372083-C-A 12251379-C-A **
14565935-G-T 12454135-G-T **
14607774-C-A 12495976-C-A **
14717520-G-T 12605588-G-T **
14960282-C-A 12848357-C-A **
16041187-C-A 13929307-C-A **
16624708-G-A 14512828-G-A **
16882024-C-A 14770144-C-A **
17222575-C-A 15110695-C-A **
18730854-C-A 16618974-C-A **
18767305-C-T 16655425-C-T **
19325606-C-A 17213726-C-A **
21054409-C-A 18892523-C-A **
21340057-C-A 19178171-C-A **
21393628-C-A 19231742-C-A **
22065033-C-A 19903147-C-A **
22085460-C-A 19923574-C-A **
22167212-C-G 20005326-C-G **
22542284-C-A 20380398-C-A **
23005838-A-G 20843952-A-G **
28546726-C-A 26400579-C-A **
28625537-T-C 26479390-T-C **
58981502-C-A 56835355-C-A **
58985312-C-A 56839165-C-A **
13727760-A-G 11572084-A-G ***
58830361-C-T 56760510-G-A ***
22449646-A-G 20287760-A-G FGC44149 DYZ19 ***
24807425-C-T 22661278-C-T P3_b2 ***
24807426-G-A 22661279-G-A P3_b2 ***
9313525-C-T 9475916-C-T ***
25578671-GT-G 23432524-GT-G P1_gr1 13×T***
26912535-CA-C 24766388-CA-C P1_r3 17×A***
13322287-T-A 11166611-T-A ***
22428338-G-C 20266452-G-C DYZ19 ***
27711690-CT-C 25565543-CT-C P1_Y2 17×T***
26283209-CA-C 24137062-CA-C P1_Y1 21×A***
22481483-G-T 20319597-G-T DYZ19 ***
18343628-C-T 16231748-C-T P6_Prx ***
9311499-T-G 9473890-T-G ***
9700815-G-A 9863206-G-A IR3_Prx ***
27761295-G-GA 25615148-G-GA P1_Y2 15×A***
58978989-GCCAG-TCCAC 56832842-GCCAG-TCCAC ***
58982490-TC-CA 56836343-TC-CA ***
13319994-C-G 11164318-C-G ***
9574853-CA-C 9737244-CA-C IR3_Prx 12×A***
22269605-TATAG-GCCAC 20107719-TATAG-GCCAC DYZ19 ***
13733372-A-G 11577696-A-G ***
22431801-T-A 20269915-T-A DYZ19 ***
18354216-AAG-A 16242336-AAG-A P6_Prx ***
13513143-AC-A 11357467-AC-A 9×C***
20025478-T-C 17913598-T-C P5_Prx ***
13606390-C-A 11450714-C-A PF4531 ***
13733641-A-T 11577965-A-T ***
13745991-T-C 11590315-T-C ***
13740174-GTCA-CTCG 11584498-GTCA-CTCG ***
13739747-T-G 11584071-T-G ***
10048601-GCTT-CCTA 10210992-GCTT-CCTA ***
22495882-A-T 20333996-A-T DYZ19 ***
13329096-G-GA 11173420-G-GA FGC18873 ***
10064281-C-A 10226672-C-A ***
13433217-A-G 11277541-A-G ***
18008709-A-T 15896829-A-T P7_Dst ***
24794436-T-G 22648289-T-G P3_b2 ***
28814976-AAGGAATGGG-GTGTAATTGA 26668829-AAGGAATGGG-GTGTAATTGA ***
3546060-T-C 3678019-T-C ***
5179541-T-C 5311500-T-C Z38491 8×AC***
22289581-G-T 20127695-G-T DYZ19 ***
22303786-C-A 20141900-C-A DYZ19 ***
22346721-C-T 20184835-C-T DYZ19 ******
22433018-G-T 20271132-G-T DYZ19 ***
22441666-T-A 20279780-T-A DYZ19 ******
24212724-A-C 22066577-A-C P3_b1 ******
24213969-CTTAATA-C 22067822-CTTAATA-C P3_b1 ***
26064837-C-A 23918690-C-A P1_Y1 ***
26102008-C-T 23955861-C-T P1_Y1 ******
28807706-G-A 26661559-G-A ***
13543171-C-G 11387495-C-G ***
9325142-T-G 9487533-T-G ***
13729803-C-T 11574127-C-T ***
16107550-C-G 13995670-C-G P8_Prx ***
19682103-T-A 17570223-T-A P5_Prx ***
25429655-C-A 23283508-C-A P2_r2 ***
25456384-T-G 23310237-T-G P2_r2 ***
26902223-T-A 24756076-T-A P1_r3 ***
25651214-T-TA 23505067-T-TA P1_b3 17×A***
13729515-AAATGG-A 11573839-AAATGG-A ***
13729554-CA-GG 11573878-CA-GG ***
13737772-GG-TT 11582096-GG-TT ***
58974456-AAATCA-TATTCC 56828309-AAATCA-TATTCC ***
2758748-T-A 2890707-T-A ***
9344037-A-C 9506428-A-C ***
9746214-T-G 9908605-T-G ***
19721737-A-C 17609857-A-C P5_Prx ***
26880327-A-C 24734180-A-C P1_r3 ***
28293276-C-T 26147129-C-T P1_b4 ***
22366339-CCT-TCG 20204453-CCT-TCG DYZ19 ***
13321158-G-A 11165482-G-A ***
10064327-C-G 10226718-C-G ***
10064335-T-C 10226726-T-C FT427124 ***
10064309-C-T 10226700-C-T ***
17629796-T-C 15517916-T-C ***
58985182-G-T 56839035-G-T ***
22302505-C-G 20140619-C-G BY40095 DYZ19 ***
22473640-C-T 20311754-C-T DYZ19 ***
2758620-T-A 2890579-T-A ***
2769703-G-T 2901662-G-T ***
2773498-C-T 2905457-C-T ***
2784473-C-A 2916432-C-A ***
2803629-C-A 2935588-C-A ***
3060960-A-T 3192919-A-T ***
3340941-G-A 3472900-G-A ***
3389912-T-C 3521871-T-C ***
4208690-C-A 4340649-C-A ***
4243714-A-C 4375673-A-C ***
4262437-C-A 4394396-C-A ***
4271315-C-A 4403274-C-A ***
4874297-T-A 5006256-T-A ***
4951459-C-T 5083418-C-T ***
4959824-C-A 5091783-C-A ***
4969686-G-T 5101645-G-T ***
5170228-C-A 5302187-C-A ***
5170236-A-T 5302195-A-T ***
5172095-C-A 5304054-C-A ***
5199815-C-A 5331774-C-A ***
5242618-C-A 5374577-C-A ***
5267020-C-A 5398979-C-A ***
5824172-C-A 5956131-C-A ***
5863954-C-A 5995913-C-A ***
5864653-T-C 5996612-T-C ***
5873871-C-A 6005830-C-A ***
6102379-C-A 6234338-C-A ***
6213709-C-T 6345668-C-T IR3_Dst ***
6246860-A-C 6378819-A-C IR3_Dst ***
6246870-A-C 6378829-A-C IR3_Dst ***
6246897-A-C 6378856-A-C IR3_Dst ***
6246915-A-T 6378874-A-T IR3_Dst ***
6246925-A-T 6378884-A-T IR3_Dst ***
6298772-T-C 6430731-T-C IR3_Dst ***
6402804-C-A 6534763-C-A ***
6403692-G-T 6535651-G-T BY62252FT18444 ***
6414349-C-A 6546308-C-A ***
6471372-C-A 6603331-C-A ***
6509565-C-A 6641524-C-A ***
6642578-C-A 6774537-C-A ***
6714497-C-A 6846456-C-A ***
6828523-C-A 6960482-C-A ***
6828549-C-A 6960508-C-A ***
6948226-C-A 7080185-C-A ***
7030914-C-A 7162873-C-A ***
7084498-C-A 7216457-C-A ***
7107436-C-A 7239395-C-A ***
7110944-C-A 7242903-C-A ***
7111789-C-A 7243748-C-A ***
7116135-C-A 7248094-C-A ***
7160569-C-A 7292528-C-A ***
7166515-C-A 7298474-C-A ***
7307851-A-G 7439810-A-G ***
7381628-C-A 7513587-C-A ***
7383844-C-T 7515803-C-T ***
7383846-T-C 7515805-T-C ***
7423697-C-A 7555656-C-A ***
7428142-A-C 7560101-A-C ***
7428171-A-C 7560130-A-C ***
7490092-C-A 7622051-C-A IR1_L ***
7490578-A-C 7622537-A-C IR1_L ***
7577977-T-C 7709936-T-C ***
8389723-C-A 8521682-C-A ***
9232958-C-G 9395349-C-G ***
9344034-A-C 9506425-A-C ***
9344043-A-C 9506434-A-C ***
9344064-A-C 9506455-A-C ***
9345062-T-G 9507453-T-G ***
9347422-A-G 9509813-A-G ***
9355440-A-G 9517831-A-G ***
9365755-T-G 9528146-T-G ***
9365761-T-G 9528152-T-G ***
9365773-A-G 9528164-A-G ***
9402587-C-A 9564978-C-A ***
9540246-C-T 9702637-C-T IR3_Prx 18×T***
9564485-T-G 9726876-T-G IR3_Prx ***
9564490-T-G 9726881-T-G IR3_Prx ***
9602730-T-G 9765121-T-G IR3_Prx ***
9707326-T-G 9869717-T-G IR3_Prx ***
9707361-T-G 9869752-T-G IR3_Prx ***
9707400-A-G 9869791-A-G IR3_Prx ***
9712962-T-A 9875353-T-A IR3_Prx ***
9750687-T-G 9913078-T-G ***
9940805-C-A 10103196-C-A ***
9940888-T-C 10103279-T-C ***
9942949-T-A 10105340-T-A ***
9944924-T-C 10107315-T-C ***
9944963-G-A 10107354-G-A FT35574 ***
9945500-A-T 10107891-A-T ***
9974158-G-A 10136549-G-A FGC32303 ZS9810 ***
10011768-C-T 10174159-C-T ***
10014939-C-T 10177330-C-T ***
10064180-G-A 10226571-G-A ***
10064226-G-T 10226617-G-T ***
10064260-C-T 10226651-C-T BY3656 ***
10064274-G-T 10226665-G-T ***
13239447-A-T 11083771-A-T ***
13255390-C-A 11099714-C-A ***
13291356-T-C 11135680-T-C ***
13291361-A-G 11135685-A-G ***
13305639-T-G 11149963-T-G ***
13322828-C-T 11167152-C-T ***
13325275-A-G 11169599-A-G ***
13325292-C-G 11169616-C-G ***
13325299-G-A 11169623-G-A ***
13326027-A-C 11170351-A-C ***
13347972-C-A 11192296-C-A ***
13429924-G-T 11274248-G-T ***
13435051-C-G 11279375-C-G ***
13437247-G-C 11281571-G-C ***
13460502-T-A 11304826-T-A ***
13461165-G-T 11305489-G-T ***
13461180-A-G 11305504-A-G ***
13461200-A-G 11305524-A-G ***
13461201-G-A 11305525-G-A ***
13461245-G-T 11305569-G-T ***
13494118-C-A 11338442-C-A ***
13494328-C-A 11338652-C-A ***
13513035-C-A 11357359-C-A ***
13513558-C-A 11357882-C-A ***
13547007-C-A 11391331-C-A FT73529 FGC43650 ***
13553334-C-A 11397658-C-A ***
13585200-C-A 11429524-C-A ***
13603141-C-A 11447465-C-A ***
13603217-C-A 11447541-C-A ***
13637263-C-A 11481587-C-A ***
13643010-C-A 11487334-C-A ***
13643943-C-A 11488267-C-A ***
13708068-A-G 11552392-A-G ***
13733330-A-T 11577654-A-T ***
13733614-A-G 11577938-A-G ***
13733628-A-G 11577952-A-G ***
13733634-C-A 11577958-C-A ***
13739548-G-C 11583872-G-C ***
13739741-C-T 11584065-C-T ***
13741474-A-C 11585798-A-C ***
13744806-T-G 11589130-T-G ***
13887613-C-A 11766907-C-A FT221855 ***
13935989-C-A 11815283-C-A ***
13937509-A-G 11816803-A-G ***
13946139-C-A 11825433-C-A ***
13996573-C-A 11875867-C-A ***
14035957-C-A 11915251-C-A ***
14074315-G-A 11953609-G-A ***
14074406-C-A 11953700-C-A ***
14297352-C-A 12176646-C-A ***
14372031-C-A 12251327-C-A ***
14490216-T-G 12369485-T-G FTA51852 ***
14490225-A-G 12369494-A-G ***
14490233-T-C 12369502-T-C ***
14490777-T-C 12370046-T-C ***
14516806-A-G 12405007-A-G ***
14561285-G-T 12449486-G-T ***
14562380-C-A 12450580-C-A ***
14563046-C-A 12451246-C-A ***
14764956-C-A 12653025-C-A ***
14784797-C-T 12672867-C-T ***
14992506-C-A 12880591-C-A ***
15012664-T-C 12900752-T-C ***
15066214-C-A 12954305-C-A ***
15084563-C-A 12972653-C-A ***
15179854-G-T 13067940-G-T ***
15397194-A-G 13285314-A-G FT346621 ***
15532593-T-A 13420713-T-A ***
15655450-G-A 13543570-G-A ***
15746080-C-A 13634200-C-A ***
15773507-T-C 13661627-T-C ***
15773517-G-T 13661637-G-T ***
16029013-C-A 13917133-C-A ***
16107522-A-T 13995642-A-T P8_Prx ***
16113102-T-G 14001222-T-G P8_Prx ***
16118208-A-G 14006328-A-G P8_Prx ***
16241483-T-A 14129603-T-A ***
16245323-C-A 14133443-C-A ***
16270986-C-A 14159106-C-A ***
16292609-C-T 14180729-C-T ***
16516250-C-A 14404370-C-A ***
16540097-G-T 14428217-G-T ***
16705395-C-A 14593515-C-A ***
16941548-C-A 14829668-C-A ***
16942136-C-A 14830256-C-A ***
16989182-C-A 14877302-C-A ***
17042694-C-A 14930814-C-A ***
17098564-C-A 14986684-C-A ***
17103948-C-A 14992068-C-A ***
17355768-C-A 15243888-C-A ***
17545939-C-A 15434059-C-A ***
17597955-C-A 15486075-C-A ***
17616854-C-A 15504974-C-A ***
17629692-G-A 15517812-G-A ***
17953931-A-G 15842051-A-G ***
18041608-G-T 15929728-G-T ***
18079291-C-A 15967411-C-A ***
18089400-C-A 15977520-C-A ***
18187687-C-A 16075807-C-A ***
18304366-G-C 16192486-G-C P6_Prx ***
18304398-T-C 16192518-T-C P6_Prx ***
18369705-A-G 16257825-A-G P6_Prx ***
18369709-A-G 16257829-A-G P6_Prx ***
18369724-A-C 16257844-A-C P6_Prx ***
18369727-C-G 16257847-C-G P6_Prx ***
18369731-A-G 16257851-A-G P6_Prx ***
18375975-A-G 16264095-A-G P6_Prx ***
18447620-A-T 16335740-A-T P6_Dst ***
18465454-C-A 16353574-C-A BY12043 P6_Dst ***
18468408-T-G 16356528-T-G P6_Dst ***
18752895-C-A 16641015-C-A ***
18819341-A-G 16707461-A-G ***
18926870-C-A 16814990-C-A ***
18928637-C-T 16816757-C-T ***
18933726-C-A 16821846-C-A ***
18959136-A-C 16847256-A-C ***
19040874-G-T 16928994-G-T ***
19146371-C-A 17034491-C-A FT58424 ***
19155941-C-A 17044061-C-A ***
19248303-C-A 17136423-C-A ***
19330184-G-T 17218304-G-T ***
19604795-G-T 17492915-G-T P5_Prx ***
19693500-C-T 17581620-C-T P5_Prx ***
19704252-A-G 17592372-A-G P5_Prx ***
19727576-A-T 17615696-A-T P5_Prx ***
19773617-C-A 17661737-C-A P5_Prx ***
20434742-C-T 18272856-C-T P5_Dst ***
20439204-A-T 18277318-A-T P5_Dst ***
20500988-T-G 18339102-T-G P5_Dst ***
20508737-A-G 18346851-A-G P5_Dst ***
20510724-T-A 18348838-T-A P5_Dst ***
20516715-A-C 18354829-A-C P5_Dst ***
20622565-G-A 18460679-G-A P4_Prx ***
20809669-C-A 18647783-C-A P4_Gap ***
20825432-C-A 18663546-C-A P4_Gap ***
20998297-T-C 18836411-T-C P4_Dst ***
21107026-T-G 18945140-T-G ***
21107030-C-A 18945144-C-A ***
21107041-C-G 18945155-C-G ***
21323452-A-G 19161566-A-G ***
21352815-C-G 19190929-C-G ***
21394390-C-A 19232504-C-A ***
21488867-G-A 19326981-G-A ***
21577365-G-T 19415479-G-T ***
22065068-A-G 19903182-A-G ***
22281946-A-G 20120060-A-G DYZ19 ***
22329851-C-A 20167965-C-A DYZ19 ***
22330445-T-C 20168559-T-C DYZ19 ***
22330453-G-A 20168567-G-A DYZ19 ***
22330463-T-C 20168577-T-C DYZ19 ***
22431981-T-G 20270095-T-G DYZ19 ***
22433956-A-T 20272070-A-T DYZ19 ***
22619591-A-G 20457705-A-G ***
22778370-C-A 20616484-C-A ***
22991049-C-G 20829163-C-G ***
23007836-G-T 20845950-G-T ***
23185234-C-A 21023348-C-A ***
23204566-C-A 21042680-C-A ***
23355260-C-A 21193374-C-A ***
23355522-C-A 21193636-C-A ***
23440697-C-A 21278811-C-A ***
23449042-C-A 21287156-C-A ***
23465387-G-T 21303501-G-T ***
23625493-A-G 21463607-A-G ***
23696326-A-C 21534440-A-C ***
23821107-T-A 21659221-T-A ***
23997440-A-G 21851293-A-G ***
24023926-T-A 21877779-T-A ***
24026947-G-T 21880800-G-T ***
24042742-G-A 21896595-G-A ***
24043795-A-G 21897648-A-G ***
24114319-T-A 21968172-T-A P3_b1 ***
24278301-A-G 22132154-A-G P3_b1 ***
24387765-C-T 22241618-C-T ***
24387977-A-C 22241830-A-C ***
24535184-G-C 22389037-G-C P3_t2 ***
24595430-C-G 22449283-C-G P3_t2 ***
24595478-A-T 22449331-A-T P3_t2 ***
24595539-A-T 22449392-A-T P3_t2 ***
24671213-G-C 22525066-G-C P3_b2 ***
24673297-A-G 22527150-A-G P3_b2 ***
24721577-C-T 22575430-C-T P3_b2 ***
24777087-A-C 22630940-A-C P3_b2 ***
24794496-T-G 22648349-T-G P3_b2 ***
24975975-T-G 22829828-T-G g1 ***
25103067-C-A 22956920-C-A g1 ***
25207703-G-C 23061556-G-C P2_r1 ***
25207741-T-G 23061594-T-G P2_r1 ***
25231924-T-G 23085777-T-G P2_r1 ***
25291221-C-A 23145074-C-A P2_r1 ***
25372080-G-A 23225933-G-A P2_r2 ***
25372091-A-T 23225944-A-T P2_r2 ***
25456411-C-A 23310264-C-A P2_r2 ***
25504641-A-C 23358494-A-C P1_gr1 ***
25602271-T-A 23456124-T-A P1_gr1 ***
25676403-G-T 23530256-G-T P1_b3 ***
25806700-T-G 23660553-T-G P1_b3 ***
25845139-T-A 23698992-T-A P1_b3 ***
25845158-G-A 23699011-G-A P1_b3 ***
26124396-T-A 23978249-T-A P1_Y1 ***
26239177-T-G 24093030-T-G P1_Y1 ***
26262185-C-T 24116038-C-T P1_Y1 21×T***
26344131-A-C 24197984-A-C P1_Y1 ***
26391451-G-A 24245304-G-A P1_Y1 ***
26463176-C-T 24317029-C-T P1_Y1 ***
26463200-A-T 24317053-A-T P1_Y1 ***
26495672-C-T 24349525-C-T P1_Y1 ***
26495684-A-G 24349537-A-G P1_Y1 ***
26505338-T-C 24359191-T-C P1_Y1 ***
26541557-T-A 24395410-T-A P1_g2 ***
26553411-G-T 24407264-G-T P1_g2 ***
26558014-T-C 24411867-T-C P1_g2 ***
26563820-G-T 24417673-G-T P1_g2 ***
26631849-T-C 24485702-T-C P1_g2 ***
26657066-C-A 24510919-C-A P1_g2 ***
26661614-C-A 24515467-C-A P1_g2 ***
26746958-C-A 24600811-C-A P1_g2 ***
26776111-A-T 24629964-A-T P1_g2 ***
26810702-G-T 24664555-G-T P1_g2 ***
26880345-A-T 24734198-A-T P1_r3 ***
26880358-A-C 24734211-A-C P1_r3 ***
26902197-G-A 24756050-G-A P1_r3 ***
26914221-A-T 24768074-A-T P1_r3 ***
26914241-A-T 24768094-A-T P1_r3 ***
26990981-A-G 24844834-A-G P1_r4 ***
26991212-G-T 24845065-G-T P1_r4 ***
26991241-G-T 24845094-G-T P1_r4 ***
26997316-A-T 24851169-A-T P1_r4 ***
26997343-G-A 24851196-G-A P1_r4 ***
26997351-G-T 24851204-G-T P1_r4 ***
27001764-T-G 24855617-T-G P1_r4 ***
27001837-A-G 24855690-A-G P1_r4 ***
27001841-A-T 24855694-A-T P1_r4 ***
27016157-C-T 24870010-C-T P1_r4 ***
27082179-T-G 24936032-T-G P1_r4 ***
27082215-G-A 24936068-G-A P1_r4 ***
27082225-A-G 24936078-A-G P1_r4 ***
27082230-G-A 24936083-G-A P1_r4 ***
27082231-A-G 24936084-A-G P1_r4 ***
27082234-A-G 24936087-A-G P1_r4 ***
27151202-G-T 25005055-G-T P1_g3 ***
27161532-T-A 25015385-T-A P1_g3 ***
27222179-A-C 25076032-A-C P1_g3 ***
27254610-A-C 25108463-A-C P1_g3 ***
27289878-G-T 25143731-G-T P1_g3 ***
27337868-T-A 25191721-T-A P1_g3 ***
27346551-G-T 25200404-G-T P1_g3 ***
27398367-T-A 25252220-T-A P1_g3 ***
27418028-C-T 25271881-C-T P1_g3 ***
27546693-C-T 25400546-C-T P1_Y2 ***
27618315-A-C 25472168-A-C P1_Y2 ***
27700177-C-A 25554030-C-A P1_Y2 ***
27700196-T-A 25554049-T-A P1_Y2 ***
27714328-C-T 25568181-C-T P1_Y2 15×T***
27808443-C-A 25662296-C-A P1_Y2 ***
27872495-G-A 25726348-G-A P1_Y2 ***
27872517-C-A 25726370-C-A P1_Y2 ***
27872528-G-A 25726381-G-A P1_Y2 ***
27916433-G-A 25770286-G-A P1_Y2 ***
28008071-T-G 25861924-T-G P1_Y2 ***
28008078-T-A 25861931-T-A P1_Y2 ***
28027960-C-T 25881813-C-T P1_Y2 ***
28293266-T-C 26147119-T-C P1_b4 ***
28293284-T-C 26147137-T-C P1_b4 ***
28311636-A-T 26165489-A-T P1_b4 ***
28516670-C-A 26370523-C-A ***
28542473-C-A 26396326-C-A ***
28584514-G-T 26438367-G-T ***
28588291-A-T 26442144-A-T ***
28609258-C-A 26463111-C-A ***
28742302-C-A 26596155-C-A ***
28760041-C-A 26613894-C-A ***
28765009-C-A 26618862-C-A ***
58887384-A-G 56703487-T-C ***
58972112-C-A 56825965-C-A ***
58981376-C-A 56835229-C-A ***
58982267-C-A 56836120-C-A ***
58992977-G-T 56846830-G-T ***
58974222-ATTCG-TTTCC 56828075-ATTCG-TTTCC ***
25553754-A-AT 23407607-A-AT P1_gr1 13×T***
26906694-G-GA 24760547-G-GA P1_r3 19×A***
6298773-GCA-CCC 6430732-GCA-CCC IR3_Dst ***
6298790-ATTTA-TTTTC 6430749-ATTTA-TTTTC IR3_Dst ***
8408465-TCCCT-CCCCG 8540424-TCCCT-CCCCG ***
9372603-C-CT 9534994-C-CT 13×T***
9698168-CA-C 9860559-CA-C IR3_Prx ***
9714716-CT-C 9877107-CT-C IR3_Prx 13×T***
9731612-GTTTG-TTTTT 9894003-GTTTG-TTTTT IR3_Prx ***
9952198-GGAAATT-CGA 10114589-GGAAATT-CGA ***
13131575-AGCAA-TGCAC 10621061-AGCAA-TGCAC ***
13461183-CA-TG 11305507-CA-TG ***
13688047-GAATGT-G 11532371-GAATGT-G ***
13723167-GG-TT 11567491-GG-TT ***
13744426-GGAAC-AGAAT 11588750-GGAAC-AGAAT ***
13846911-TATTTATTCG-AATTGTTTCA 11726205-TATTTATTCG-AATTGTTTCA ***
13846940-TAT-GAA 11726234-TAT-GAA ***
13857849-TAGAATT-CAGAATG 11737143-TAGAATT-CAGAATG ***
13857969-CCT-TCG 11737263-CCT-TCG ***
14937865-T-TTTCTTTTCTA 12825940-T-TTTCTTTTCTA ***
15022824-GTTTT-G 12910913-GTTT-G 16×T***
15320672-A-AAGAAGAAGG 13208790-A-AAGAAGAAGG ***
15477291-CAAAAAAA-C 13365411-CAAAAAAA-C 18×A***
15491943-ATA-G 13380063-ATA-G ***
16533676-CAT-C 14421796-CAT-C ***
17950825-AATATATATATATATATATATATATATATAT-A 15838945-AATATATATATATATATATATATATATATAT-A 27×AT***
18454858-CCT-C 16342978-CCT-C P6_Dst 5×CTTT***
19510292-GTA-TTT 17398412-GTA-TTT ***
19682558-TGGGT-GGGGG 17570678-TGGGT-GGGGG P5_Prx ***
19727554-ACCT-CCCC 17615674-ACCT-CCCC P5_Prx ***
19743732-TAAAT-AAAAA 17631852-TAAAT-AAAAA P5_Prx ***
20025482-T-TCCC 17913602-T-TCCC P5_Prx 14×C***
20105750-C-CTATA 17993870-C-CTATA P5_Dst ***
20252992-TTTA-T 18091106-TTTA-T P5_Dst 6×TTA***
20872237-AT-A 18710351-AT-A P4_Dst 11×T***
20998300-CAAA-C 18836414-CAAA-C P4_Dst 28×A***
21515841-CGAC-GGAA 19353955-CGAC-GGAA ***
22330439-CC-AA 20168553-CC-AA DYZ19 ***
24052805-CT-C 21906658-CT-C P3_b1 10×T***
24325455-AT-A 22179308-AT-A P3_t1 11×T***
24575875-TC-T 22429728-TC-T P3_t2 ***
24743954-T-TA 22597807-T-TA P3_b2 9×A***
25335133-GT-G 23188986-GT-G P2_r1 11×T***
25445990-ATT-A 23299843-ATT-A P2_r2 17×T***
25456371-C-AAA 23310224-C-AAA P2_r2 ***
25536736-CA-C 23390589-CA-C P1_gr1 8×A***
25702689-GA-G 23556542-GA-G P1_b3 13×A***
25939403-CT-C 23793256-CT-C P1_Y1 11×T***
26376499-CAAAA-C 24230352-CAAAA-C P1_Y1 18×A***
26415697-GAAAG-AAAAA 24269550-GAAAG-AAAAA P1_Y1 ***
26814944-TA-T 24668797-TA-T P1_g2 12×A***
27302667-GTA-G 25156520-GTA-G P1_g3 ***
27583038-GTTCTATTG-TTTTTTTTT 25436891-GTTCTATTG-TTTTTTTTT P1_Y2 ***
27641766-CTT-C 25495619-CTT-C P1_Y2 14×T***
28375653-TAA-T 26229506-TAA-T P1_gr2 14×A***
28793019-TCGG-ACGC 26646872-TCGG-ACGC ***
58978686-C-CTCCACTCCATTCCAT 56832539-C-CTCCACTCCATTCCAT ***
58981873-TG-CA 56835726-TG-CA ***
58981972-TCCAT-CCCA 56835825-TCCAT-CCCA ***
58982289-ATGCCA-TTCCCT 56836142-ATGCCA-TTCCCT ***
58992976-AG-TT 56846829-AG-TT ***
58993334-AGG-GGT 56847187-AGG-GGT ***
58997064-ACCAG-TCCAA 56850917-ACCAG-TCCAA ***
59004300-TA-T 56858153-TA-T 9×A***
8555543-G-GTTTTTT 8687502-G-GTTTTTT ***
15491941-GTA-G 13380061-GTA-G 19×TA***
23293598-GTA-G 21131712-GTA-G 20×TA***
19500593-GAGAA-G,GAGAAAGAA 17388713-GAGAA-G,GAGAAAGAA 15×AGAA***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.