Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > M145/P205/PF144 > M96/PF1823 > P147 > P177 > M215 > M35 > Z827 > PF1957 > PF1962

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY2
287885
hg19:Y:9592085-A-C hg38:Y:9754476-A-C IR3_Prx A+
hg19:Y:22222463-A-G hg38:Y:20060577-A-G DYZ19 A+
hg19:Y:22305690-A-T hg38:Y:20143804-A-T BY10480 DYZ19 A+
hg19:Y:6170195-C-A hg38:Y:6302154-C-A IR3_Dst A*
hg19:Y:28817584-G-C hg38:Y:26671437-G-C A*
hg19:Y:7104310-A-AT hg38:Y:7236269-A-AT 9×TA*
hg19:Y:6216545-A-C hg38:Y:6348504-A-C IR3_Dst A*
hg19:Y:13695012-T-A hg38:Y:11539336-T-A DYZ17 A*
hg19:Y:19588692-C-T hg38:Y:17476812-C-T P5_Prx YA*
hg19:Y:20029595-A-G hg38:Y:17917715-A-G P5_Prx A*
hg19:Y:20663162-C-A hg38:Y:18501276-C-A P4_Prx A*
hg19:Y:22455496-A-G hg38:Y:20293610-A-G DYZ19 A*
hg19:Y:25534741-A-AT hg38:Y:23388594-A-AT P1_gr1 8×TA*
hg19:Y:25591967-C-T hg38:Y:23445820-C-T P1_gr1 A*
hg19:Y:25956990-G-A hg38:Y:23810843-G-A P1_Y1 A*
hg19:Y:26253816-G-A hg38:Y:24107669-G-A P1_Y1 A*
hg19:Y:22462709-A-G hg38:Y:20300823-A-G FT458039 DYZ19 +
hg19:Y:2746212-A-C hg38:Y:2878171-A-C YY+
hg19:Y:2840471-G-GT hg38:Y:2972430-G-GT 8×T+
hg19:Y:6397717-C-G hg38:Y:6529676-C-G BY46717 +
hg19:Y:6837793-C-T hg38:Y:6969752-C-T BY36799 YY+
hg19:Y:6881004-T-C hg38:Y:7012963-T-C YY+
hg19:Y:7057516-A-C hg38:Y:7189475-A-C YY+
hg19:Y:7112896-A-T hg38:Y:7244855-A-T YY+
hg19:Y:7828001-T-A hg38:Y:7959960-T-A YY+
hg19:Y:7835822-C-T hg38:Y:7967781-C-T YY+
hg19:Y:8361232-A-G hg38:Y:8493191-A-G BY36802 YY+
hg19:Y:8381352-T-A hg38:Y:8513311-T-A YY+
hg19:Y:9403217-T-C hg38:Y:9565608-T-C YY+
hg19:Y:9899293-C-G hg38:Y:10061684-C-G BY45237 Y+
hg19:Y:10060281-C-A hg38:Y:10222672-C-A +
hg19:Y:13232139-T-C hg38:Y:11076463-T-C BY49106 +
hg19:Y:13712912-T-C hg38:Y:11557236-T-C BY49153 DYZ17 +
hg19:Y:13814827-C-G hg38:Y:11694121-C-G DYZ17 +
hg19:Y:13825556-T-A hg38:Y:11704850-T-A BY36806 DYZ17 +
hg19:Y:13827363-G-A hg38:Y:11706657-G-A BY36807 DYZ17 +
hg19:Y:14151178-C-A hg38:Y:12030472-C-A YY+
hg19:Y:14293985-A-G hg38:Y:12173279-A-G YY+
hg19:Y:14652505-T-C hg38:Y:12540570-T-C BY36809 YY+
hg19:Y:16778184-C-T hg38:Y:14666304-C-T BY36812 YY+
hg19:Y:16787799-G-A hg38:Y:14675919-G-A YY+
hg19:Y:16866352-G-T hg38:Y:14754472-G-T BY36813 YY+
hg19:Y:16985766-G-A hg38:Y:14873886-G-A YY+
hg19:Y:17201114-G-A hg38:Y:15089234-G-A YY+
hg19:Y:17264399-C-G hg38:Y:15152519-C-G YY+
hg19:Y:17298093-TC-T hg38:Y:15186213-TC-T +
hg19:Y:17334394-A-T hg38:Y:15222514-A-T YY+
hg19:Y:17348012-G-T hg38:Y:15236132-G-T YY+
hg19:Y:17764925-C-T hg38:Y:15653045-C-T YY+
hg19:Y:17908433-CAG-C hg38:Y:15796553-CAG-C +
hg19:Y:17996440-T-C hg38:Y:15884560-T-C P7_Gap Y+
hg19:Y:18095343-G-C hg38:Y:15983463-G-C YY+
hg19:Y:18103793-G-A hg38:Y:15991913-G-A BY36815 YY+
hg19:Y:18109725-T-C hg38:Y:15997845-T-C BY36816 YY+
hg19:Y:18632172-A-G hg38:Y:16520292-A-G YY+
hg19:Y:18949413-T-C hg38:Y:16837533-T-C BY36818 YY+
hg19:Y:18995159-C-A hg38:Y:16883279-C-A YY+
hg19:Y:19264296-A-G hg38:Y:17152416-A-G BY36819 YY+
hg19:Y:19455301-G-A hg38:Y:17343421-G-A YY+
hg19:Y:20832523-C-A hg38:Y:18670637-C-A BY36820 P4_Gap +
hg19:Y:21228371-A-G hg38:Y:19066485-A-G YY+
hg19:Y:21567271-G-A hg38:Y:19405385-G-A BY36821 YY+
hg19:Y:22228889-A-G hg38:Y:20067003-A-G BY36822 DYZ19 +
hg19:Y:22300494-G-A hg38:Y:20138608-G-A BY36823 DYZ19 +
hg19:Y:22442449-G-T hg38:Y:20280563-G-T BY48570 DYZ19 +
hg19:Y:22462023-T-C hg38:Y:20300137-T-C BY49323 DYZ19 +
hg19:Y:22844319-T-A hg38:Y:20682433-T-A YY+
hg19:Y:22914761-G-A hg38:Y:20752875-G-A YY+
hg19:Y:22957070-C-G hg38:Y:20795184-C-G YY+
hg19:Y:22966868-T-C hg38:Y:20804982-T-C YY+
hg19:Y:23234431-G-A hg38:Y:21072545-G-A Y+
hg19:Y:23869694-AATGTATATGTAT-A hg38:Y:21707808-AATGTATATGTAT-A 5×ATGTAT+
hg19:Y:28812856-G-A hg38:Y:26666709-G-A BY48103 +
hg19:Y:19047817-CGTGTGT-C,CGT hg38:Y:16935937-CGTGTGT-C,CGT 16×GT*
hg19:Y:22479410-T-A hg38:Y:20317524-T-A DYZ19 *
hg19:Y:22480234-A-C hg38:Y:20318348-A-C DYZ19 *
hg19:Y:28795137-A-T hg38:Y:26648990-A-T *
hg38:Y:10986396-T-C **
hg38:Y:10803988-C-T **
hg38:Y:10804008-C-T **
hg38:Y:10804016-C-A **
hg38:Y:10804028-A-T **
hg38:Y:10986388-T-C **
hg19:Y:13487745-C-T hg38:Y:11332069-C-T **
hg38:Y:10770728-C-T **
hg38:Y:10770732-C-A **
hg38:Y:10770738-CCTAA-C **
hg38:Y:10770746-C-T **
hg38:Y:10770750-T-C **
hg38:Y:10770751-G-T **
hg38:Y:10937667-C-CA **
hg38:Y:10937682-T-C **
hg38:Y:10937702-T-A **
hg38:Y:10982189-A-C **
hg38:Y:10992124-G-T **
hg19:Y:28798294-A-T hg38:Y:26652147-A-T **
hg19:Y:26204654-G-T hg38:Y:24058507-G-T P1_Y1 **
hg38:Y:10982186-A-C **
hg38:Y:10937661-A-T **
hg38:Y:10937669-CA-C **
hg38:Y:10937690-T-C **
hg38:Y:10961284-T-C **
hg38:Y:10961302-A-G **
hg38:Y:10961305-C-A **
hg38:Y:10785340-C-T **
hg38:Y:10986387-A-G **
hg19:Y:7030607-G-T hg38:Y:7162566-G-T **
hg38:Y:11037092-C-G **
hg19:Y:14531079-C-A hg38:Y:12419280-C-A **
hg19:Y:16148998-A-AG hg38:Y:14037118-A-AG P8_Dst **
hg19:Y:22172729-C-A hg38:Y:20010843-C-A **
hg38:Y:10661194-TTCCACTGCAC-T **
hg38:Y:10944545-G-T **
hg38:Y:10748025-C-G **
hg38:Y:9109354-G-T **
hg38:Y:10767676-C-CATTAT **
hg38:Y:10785040-C-A **
hg38:Y:56840149-C-A **
hg19:Y:5185480-C-A hg38:Y:5317439-C-A **
hg19:Y:7241815-C-T hg38:Y:7373774-C-T **
hg38:Y:10911546-C-A **
hg38:Y:10986425-A-G **
hg38:Y:10880705-C-A **
hg19:Y:15831919-C-A hg38:Y:13720039-C-A **
hg38:Y:10785062-C-A **
hg19:Y:22972996-C-A hg38:Y:20811110-C-A **
hg19:Y:3110277-T-C hg38:Y:3242236-T-C FT81132 **
hg19:Y:3961308-A-G hg38:Y:4093267-A-G **
hg19:Y:5482646-A-T hg38:Y:5614605-A-T 9×T**
hg19:Y:5528785-T-C hg38:Y:5660744-T-C **
hg19:Y:6542040-G-T hg38:Y:6673999-G-T **
hg19:Y:7090214-T-C hg38:Y:7222173-T-C **
hg19:Y:7410197-ACGTCAGTTTTTTAGAGATTCAGC-A hg38:Y:7542156-ACGTCAGTTTTTTAGAGATTCAGC-A **
hg19:Y:8719102-A-G hg38:Y:8851061-A-G **
hg19:Y:8835418-A-G hg38:Y:8967377-A-G **
hg19:Y:8985457-C-A hg38:Y:9147848-C-A **
hg38:Y:10682700-A-C **
hg38:Y:10796552-T-C **
hg38:Y:10832443-C-A **
hg38:Y:10877187-G-T **
hg38:Y:10935682-C-T **
hg38:Y:10962987-T-A **
hg19:Y:13445237-G-T hg38:Y:11289561-G-T **
hg19:Y:13456833-A-G hg38:Y:11301157-A-G BY45940 **
hg19:Y:13567469-G-C hg38:Y:11411793-G-C BY48162 **
hg19:Y:13577880-C-A hg38:Y:11422204-C-A **
hg38:Y:11675567-G-A DYZ17 **
hg19:Y:13941527-G-T hg38:Y:11820821-G-T **
hg19:Y:14848313-G-T hg38:Y:12736379-G-T BY36810 **
hg19:Y:15485506-G-A hg38:Y:13373626-G-A **
hg19:Y:15722448-C-A hg38:Y:13610568-C-A **
hg19:Y:16618919-G-T hg38:Y:14507039-G-T **
hg19:Y:16703674-G-T hg38:Y:14591794-G-T **
hg19:Y:17296525-C-G hg38:Y:15184645-C-G **
hg19:Y:17649376-T-G hg38:Y:15537496-T-G **
hg19:Y:18166996-C-G hg38:Y:16055116-C-G **
hg19:Y:18249765-G-A hg38:Y:16137885-G-A **
hg19:Y:18790530-C-A hg38:Y:16678650-C-A **
hg19:Y:19131777-C-A hg38:Y:17019897-C-A **
hg19:Y:19199457-C-A hg38:Y:17087577-C-A FTB24458 **
hg19:Y:19426363-C-A hg38:Y:17314483-C-A **
hg19:Y:21531597-G-T hg38:Y:19369711-G-T **
hg19:Y:23777311-T-C hg38:Y:21615425-T-C **
hg19:Y:22425960-G-A hg38:Y:20264074-G-A BY217951 DYZ19 ***
hg19:Y:15406939-T-TAA hg38:Y:13295059-T-TAA 20×A***
hg38:Y:10882102-C-A ***
hg38:Y:11643773-G-A DYZ17 ***
hg19:Y:17923876-GTT-G,GT hg38:Y:15811996-GTT-G,GT 18×T***
hg38:Y:10882071-A-T ***
hg38:Y:10882099-C-G ***
hg38:Y:10882106-A-C ***
hg38:Y:10982181-C-A ***
hg38:Y:10980696-C-T ***
hg19:Y:28798289-A-G hg38:Y:26652142-A-G ***
hg38:Y:10991260-C-CAGGTTA ***
hg38:Y:10669451-T-C ***
hg19:Y:28798281-G-T hg38:Y:26652134-G-T ***
hg19:Y:28798285-T-A hg38:Y:26652138-T-A ***
hg38:Y:10914254-G-T ***
hg38:Y:10825466-AT-A Y134042 ***
hg38:Y:10982205-A-T ***
hg38:Y:10982227-T-A ***
hg38:Y:10982242-T-G ***
hg38:Y:11643767-TG-T DYZ17 ***
hg38:Y:10796678-A-G,T ***
hg19:Y:15476107-TA-T,TAA hg38:Y:13364227-TA-T,TAA 14×A***
hg19:Y:17028646-C-A hg38:Y:14916766-C-A ***
hg19:Y:15209530-AT-A,ATT hg38:Y:13097616-AT-A,ATT 16×T***
hg38:Y:10821919-T-A ***
hg19:Y:6815700-C-A hg38:Y:6947659-C-A ***
hg19:Y:13704988-A-T hg38:Y:11549312-A-T DYZ17 ***
hg38:Y:10821933-A-G ***
hg38:Y:11652644-C-A DYZ17 ***
hg38:Y:11031761-C-A ***
hg19:Y:22555369-G-GT hg38:Y:20393483-G-GT 9×T***
hg19:Y:14847004-CAAAA-C,CAAAAA hg38:Y:12735070-CAAAA-C,CAAAAA 20×A***
hg19:Y:14985276-C-A hg38:Y:12873344-C-A ***
hg19:Y:13570907-C-A hg38:Y:11415231-C-A ***
hg38:Y:10885167-GA-AA,G ***
hg38:Y:10794600-G-T ***
hg38:Y:10747991-C-G ***
hg19:Y:7043647-G-T hg38:Y:7175606-G-T ***
hg38:Y:10997079-C-A ***
hg19:Y:18534143-CAT-C,CATAT hg38:Y:16422263-CAT-C,CATAT P6_Dst 8×AT***
hg38:Y:10998023-C-G ***
hg19:Y:23415274-CTATATA-C,CTATA hg38:Y:21253388-CTATATA-C,CTATA 12×TA***
hg19:Y:17946803-AT-A hg38:Y:15834923-AT-A 9×T***
hg19:Y:14716762-C-T hg38:Y:12604830-C-T ***
hg19:Y:14694625-C-A hg38:Y:12582691-C-A ***
hg19:Y:19223517-C-A hg38:Y:17111637-C-A ***
hg19:Y:9018253-C-A hg38:Y:9180644-C-A ***
hg19:Y:27860939-C-A hg38:Y:25714792-C-A P1_Y2 ***
hg19:Y:16007330-C-A hg38:Y:13895450-C-A ***
hg19:Y:21485814-C-A hg38:Y:19323928-C-A ***
hg19:Y:17115290-C-A hg38:Y:15003410-C-A ***
hg19:Y:22723386-CAAA-C,CAA hg38:Y:20561500-CAAA-C,CAA 17×A***
hg19:Y:14753064-C-A hg38:Y:12641133-C-A ***
hg19:Y:22661493-ATGTGTGTGTGTGTGTG-A hg38:Y:20499607-ATGTGTGTGTGTGTGTG-A 26×TG***
hg19:Y:8498338-CAA-C,CAAA hg38:Y:8630297-CAA-C,CAAA 16×A***
hg19:Y:2864165-T-A hg38:Y:2996124-T-A ***
hg19:Y:2880498-C-A hg38:Y:3012457-C-A ***
hg19:Y:2980892-C-A hg38:Y:3112851-C-A ***
hg19:Y:4687726-G-T hg38:Y:4819685-G-T ***
hg19:Y:4769648-C-A hg38:Y:4901607-C-A ***
hg19:Y:6688871-C-A hg38:Y:6820830-C-A ***
hg19:Y:6967028-CT-C,CTT hg38:Y:7098987-CT-C,CTT 12×T***
hg19:Y:7075240-CAAAAAA-C,CAAAAA hg38:Y:7207199-CAAAAAA-C,CAAAAA 17×A***
hg19:Y:8095506-A-G hg38:Y:8227465-A-G ***
hg19:Y:8779864-A-G hg38:Y:8911823-A-G ***
hg19:Y:9166418-C-A hg38:Y:9328809-C-A ***
hg19:Y:9864515-G-A hg38:Y:10026906-G-A ***
hg38:Y:10756125-TC-T ***
hg38:Y:10831370-C-A ***
hg38:Y:10892974-C-A ***
hg19:Y:13459242-ATTCCG-A,ATTCCA hg38:Y:11303566-ATTCCG-A,ATTCCA ***
hg19:Y:14201123-C-A hg38:Y:12080417-C-A ***
hg19:Y:14319488-C-A hg38:Y:12198782-C-A ***
hg19:Y:14453709-GA-G,GAAA hg38:Y:12332982-GA-G,GAAA 18×A***
hg19:Y:14953338-T-C hg38:Y:12841412-T-C ***
hg19:Y:15361872-C-A hg38:Y:13249992-C-A ***
hg19:Y:16340892-C-A hg38:Y:14229012-C-A ***
hg19:Y:16373779-AC-A hg38:Y:14261899-AC-A ***
hg19:Y:16781288-AT-A hg38:Y:14669408-AT-A ***
hg19:Y:17086085-A-G hg38:Y:14974205-A-G ***
hg19:Y:17242978-T-TACACAC hg38:Y:15131098-T-TACACAC 18×AC***
hg19:Y:17353822-C-T hg38:Y:15241942-C-T ***
hg19:Y:18066289-G-A hg38:Y:15954409-G-A ***
hg19:Y:19145311-C-A hg38:Y:17033431-C-A ***
hg19:Y:19346004-T-C hg38:Y:17234124-T-C ***
hg19:Y:21193510-C-A hg38:Y:19031624-C-A ***
hg19:Y:21509059-C-A hg38:Y:19347173-C-A ***
hg19:Y:21604448-T-C hg38:Y:19442562-T-C ***
hg19:Y:21699638-C-A hg38:Y:19537752-C-A ***
hg19:Y:22183984-C-A hg38:Y:20022098-C-A ***
hg19:Y:23510435-C-A hg38:Y:21348549-C-A ***
hg19:Y:23961303-AAAAAG-A hg38:Y:21815156-AAAAAG-A 4×AAAAG***
hg19:Y:24430255-A-G hg38:Y:22284108-A-G ***
hg19:Y:27860945-T-C hg38:Y:25714798-T-C P1_Y2 ***
hg19:Y:28796828-A-G hg38:Y:26650681-A-G ***
hg38:Y:56858554-G-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 287885896078973479657279401
Used in age calculations896078973479657279401
Counts of SNPs4036
Variant counts last updated 2025-12-09 03:03:25.



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