Langenegger

BigY3: 952838
MDKA Birth: Switzerland 1664

Tree Position

R-P312/S116 > Z290 > L21/S145 > S552 > DF13 > ZZ10 > Z253 > Z2534 > ZZ5 > Z2185 > BY44331 > BY189696

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
952838
hg19:Y:2923257-C-T hg38:Y:3055216-C-T A+
hg19:Y:27900087-G-A hg38:Y:25753940-G-A P1_Y2 A+
hg19:Y:6330225-A-AAC hg38:Y:6462184-A-AAC IR3_Dst 14×ACA*
hg19:Y:25970734-T-TTC hg38:Y:23824587-T-TTC P1_Y1 13×TCA*
hg19:Y:3542458-G-A hg38:Y:3674417-G-A A*
hg19:Y:3682248-T-A hg38:Y:3814207-T-A A3180 A*
hg19:Y:4256127-C-G hg38:Y:4388086-C-G A*
hg19:Y:5663949-T-G hg38:Y:5795908-T-G A*
hg19:Y:13285653-C-CG hg38:Y:11129977-C-CG A*
hg19:Y:13448530-A-T hg38:Y:11292854-A-T A*
hg19:Y:58990697-A-C hg38:Y:56844550-A-C A*
hg19:Y:59016253-T-C hg38:Y:56870106-T-C A*
hg19:Y:59017068-G-C hg38:Y:56870921-G-C A*
hg19:Y:59020047-G-A hg38:Y:56873900-G-A A*
hg19:Y:6286232-G-A hg38:Y:6418191-G-A IR3_Dst A*
hg19:Y:19691774-T-G hg38:Y:17579894-T-G P5_Prx A*
hg38:Y:56830994-C-A A*
hg19:Y:18447690-C-A hg38:Y:16335810-C-A P6_Dst A*
hg38:Y:56842921-C-T A*
hg19:Y:28817355-G-A hg38:Y:26671208-G-A A*
hg19:Y:26314362-A-C hg38:Y:24168215-A-C P1_Y1 A*
hg19:Y:5035398-G-GA hg38:Y:5167357-G-GA 10×AA*
hg38:Y:56849658-G-A A*
hg19:Y:13489721-A-T hg38:Y:11334045-A-T A*
hg19:Y:27943970-C-CCA hg38:Y:25797823-C-CCA P1_Y2 14×CAA*
hg38:Y:10655413-T-G A*
hg19:Y:13449482-C-T hg38:Y:11293806-C-T A*
hg38:Y:56833652-C-T A*
hg19:Y:13449572-C-T hg38:Y:11293896-C-T A*
hg38:Y:56831650-C-T A*
hg19:Y:20421899-T-G hg38:Y:18260013-T-G P5_Dst A*
hg38:Y:56879683-C-T A*
hg38:Y:56879694-G-C A*
hg19:Y:13448433-A-C hg38:Y:11292757-A-C A*
hg19:Y:19630657-A-C hg38:Y:17518777-A-C FT452268 P5_Prx A*
hg19:Y:19757878-A-C hg38:Y:17645998-A-C P5_Prx A*
hg19:Y:19616999-A-C hg38:Y:17505119-A-C P5_Prx YA*
hg19:Y:25969491-A-C hg38:Y:23823344-A-C P1_Y1 A*
hg19:Y:6277854-A-C hg38:Y:6409813-A-C IR3_Dst A*
hg38:Y:56831365-A-C A*
hg38:Y:56829570-C-G A*
hg19:Y:6330560-A-C hg38:Y:6462519-A-C IR3_Dst A*
hg19:Y:3769088-A-C hg38:Y:3901047-A-C A*
hg19:Y:25971353-A-C hg38:Y:23825206-A-C P1_Y1 A*
hg19:Y:25945740-T-G hg38:Y:23799593-T-G P1_Y1 A*
hg19:Y:3538739-G-A hg38:Y:3670698-G-A FT95066 A*
hg19:Y:6239283-A-C hg38:Y:6371242-A-C IR3_Dst A*
hg19:Y:6327442-C-T hg38:Y:6459401-C-T IR3_Dst A*
hg19:Y:13450025-C-T hg38:Y:11294349-C-T A*
hg19:Y:13451640-A-C hg38:Y:11295964-A-C A*
hg19:Y:13489742-T-G hg38:Y:11334066-T-G A*
hg19:Y:16104541-A-C hg38:Y:13992661-A-C P8_Prx A*
hg19:Y:18309900-T-G hg38:Y:16198020-T-G P6_Prx A*
hg19:Y:19593210-T-G hg38:Y:17481330-T-G P5_Prx YA*
hg19:Y:19679840-T-G hg38:Y:17567960-T-G P5_Prx A*
hg19:Y:19765608-T-G hg38:Y:17653728-T-G P5_Prx A*
hg19:Y:19810138-T-G hg38:Y:17698258-T-G P5_Prx A*
hg19:Y:19833263-T-G hg38:Y:17721383-T-G P5_Prx A*
hg19:Y:20683662-A-C hg38:Y:18521776-A-C P4_Prx A*
hg19:Y:23719653-A-C hg38:Y:21557767-A-C A*
hg19:Y:23727330-C-A hg38:Y:21565444-C-A A*
hg19:Y:24251350-A-C hg38:Y:22105203-A-C P3_b1 A*
hg19:Y:26062318-C-T hg38:Y:23916171-C-T P1_Y1 A*
hg19:Y:27572555-C-CTG hg38:Y:25426408-C-CTG P1_Y2 10×TGA*
hg38:Y:56830103-C-T A*
hg38:Y:56830562-T-C A*
hg38:Y:56834992-T-A A*
hg38:Y:10796181-C-G FT431576 +
hg38:Y:10843939-G-A FT433740 +
hg19:Y:4992283-A-G hg38:Y:5124242-A-G FT136342 +
hg19:Y:5847857-G-T hg38:Y:5979816-G-T FT386912 +
hg19:Y:6033826-T-G hg38:Y:6165785-T-G FT386942 +
hg19:Y:6417979-T-A hg38:Y:6549938-T-A FT386977 +
hg19:Y:7758962-G-T hg38:Y:7890921-G-T FT384255 Y+
hg19:Y:7760957-A-C hg38:Y:7892916-A-C FT384256 YY+
hg19:Y:9726863-T-C hg38:Y:9889254-T-C FT387045 IR3_Prx +
hg38:Y:10922000-C-T FT436639 +
hg19:Y:13613886-A-G hg38:Y:11458210-A-G FT446506 +
hg38:Y:11651080-T-C FT450222 DYZ17 +
hg19:Y:13917755-C-T hg38:Y:11797049-C-T FT384575 Y+
hg19:Y:14849638-C-T hg38:Y:12737704-C-T FT384776 YY+
hg19:Y:14967553-A-C hg38:Y:12855628-A-C FT384791 YY+
hg19:Y:15660060-C-T hg38:Y:13548180-C-T FT384901 YY+
hg19:Y:16033401-C-T hg38:Y:13921521-C-T FT384970 YY+
hg19:Y:17566592-TG-T hg38:Y:15454712-TG-T +
hg19:Y:18123128-C-G hg38:Y:16011248-C-G FT385411 YY+
hg19:Y:18248203-A-G hg38:Y:16136323-A-G FT385443 Y+
hg19:Y:18731692-C-T hg38:Y:16619812-C-T FT385501 YY+
hg19:Y:18867258-G-A hg38:Y:16755378-G-A YY+
hg19:Y:18893642-A-G hg38:Y:16781762-A-G FT385535 YY+
hg19:Y:19302491-G-T hg38:Y:17190611-G-T FT176911 Y+
hg19:Y:19553342-G-T hg38:Y:17441462-G-T FT177011 Y+
hg19:Y:21571431-G-A hg38:Y:19409545-G-A FT294099 YY+
hg19:Y:21635667-C-A hg38:Y:19473781-C-A FT385851 YY+
hg19:Y:21896975-A-C hg38:Y:19735089-A-C FT385917 YY+
hg19:Y:22724031-C-T hg38:Y:20562145-C-T FT386039 YY+
hg19:Y:28712410-A-C hg38:Y:26566263-A-C +
hg19:Y:3095284-T-A hg38:Y:3227243-T-A *
hg19:Y:3425715-A-G hg38:Y:3557674-A-G *
hg19:Y:3427775-C-T hg38:Y:3559734-C-T FGC48408 *
hg19:Y:4152189-A-G hg38:Y:4284148-A-G *
hg19:Y:4185600-G-C hg38:Y:4317559-G-C *
hg19:Y:5997998-T-A hg38:Y:6129957-T-A *
hg19:Y:16013027-C-T hg38:Y:13901147-C-T Y*
hg19:Y:3532291-CT-C hg38:Y:3664250-CT-C *
hg19:Y:3577232-T-A hg38:Y:3709191-T-A *
hg19:Y:3719168-T-C hg38:Y:3851127-T-C *
hg19:Y:3719927-A-C hg38:Y:3851886-A-C *
hg19:Y:5868202-A-T hg38:Y:6000161-A-T *
hg19:Y:5930731-C-T hg38:Y:6062690-C-T *
hg19:Y:6408303-A-G hg38:Y:6540262-A-G *
hg19:Y:13292311-C-A hg38:Y:11136635-C-A *
hg19:Y:58990480-T-A hg38:Y:56844333-T-A *
hg19:Y:58995875-C-T hg38:Y:56849728-C-T *
hg19:Y:59011559-C-T hg38:Y:56865412-C-T *
hg19:Y:59011576-G-T hg38:Y:56865429-G-T *
hg19:Y:59015102-G-C hg38:Y:56868955-G-C *
hg19:Y:59015128-C-T hg38:Y:56868981-C-T *
hg19:Y:6356897-G-GGA hg38:Y:6488856-G-GGA 12×GA*
hg19:Y:17275003-TAGATAGAC-T,TAGATAGAT hg38:Y:15163123-TAGATAGAC-T,TAGATAGAT *
hg38:Y:56843161-C-T *
hg19:Y:3275841-C-G hg38:Y:3407800-C-G *
hg19:Y:8379577-C-CTGTG hg38:Y:8511536-C-CTGTG 18×TG*
hg19:Y:4545018-G-A hg38:Y:4676977-G-A *
hg19:Y:28536031-CA-C hg38:Y:26389884-CA-C *
hg19:Y:5332091-A-C hg38:Y:5464050-A-C *
hg38:Y:56827817-T-G *
hg38:Y:56830228-CA-T *
hg19:Y:14465752-A-C hg38:Y:12345025-A-C YY*
hg19:Y:5415367-C-T hg38:Y:5547326-C-T *
hg19:Y:14107418-G-A hg38:Y:11986712-G-A Y*
hg19:Y:28818583-T-A hg38:Y:26672436-T-A *
hg19:Y:7867883-A-G hg38:Y:7999842-A-G BY209286 **
hg19:Y:23046235-AAAT-A hg38:Y:20884349-AAAT-A **
hg19:Y:15048489-GTTTT-G hg38:Y:12936580-GTTTT-G 19×T**
hg19:Y:9519814-T-C hg38:Y:9682205-T-C BY42829 **
hg19:Y:21890771-TA-T hg38:Y:19728885-TA-T 10×A**
hg19:Y:21555238-C-CTTT hg38:Y:19393352-C-CTTT 15×T**
hg19:Y:20326052-G-A hg38:Y:18164166-G-A P5_Dst **
hg19:Y:6179897-T-C hg38:Y:6311856-T-C IR3_Dst **
hg19:Y:18886034-AATT-A hg38:Y:16774154-AATT-A 5×ATT**
hg19:Y:16097142-A-C hg38:Y:13985262-A-C P8_Prx **
hg19:Y:3812718-CAAA-C hg38:Y:3944677-CAAA-C 17×A**
hg19:Y:18914207-A-C hg38:Y:16802327-A-C **
hg19:Y:3967545-G-T hg38:Y:4099504-G-T **
hg19:Y:4216306-G-A hg38:Y:4348265-G-A **
hg19:Y:4261647-A-G hg38:Y:4393606-A-G **
hg19:Y:4663008-T-A hg38:Y:4794967-T-A **
hg19:Y:5652168-T-G hg38:Y:5784127-T-G **
hg19:Y:6415856-T-G hg38:Y:6547815-T-G **
hg19:Y:9519817-T-C hg38:Y:9682208-T-C **
hg19:Y:9519823-T-C hg38:Y:9682214-T-C **
hg19:Y:9519848-CT-C hg38:Y:9682239-CT-C **
hg19:Y:9767403-G-A hg38:Y:9929794-G-A **
hg19:Y:13457733-T-TTCAACTTGAA hg38:Y:11302057-T-TTCAACTTGAA **
hg19:Y:13612612-T-C hg38:Y:11456936-T-C **
hg19:Y:15220155-A-G hg38:Y:13108241-A-G **
hg19:Y:16003060-A-G hg38:Y:13891180-A-G **
hg19:Y:16003066-A-G hg38:Y:13891186-A-G **
hg19:Y:16003086-T-C hg38:Y:13891206-T-C **
hg19:Y:16897378-G-A hg38:Y:14785498-G-A FT385131 **
hg19:Y:18126486-T-A hg38:Y:16014606-T-A **
hg19:Y:18794968-T-A hg38:Y:16683088-T-A **
hg19:Y:20805666-C-T hg38:Y:18643780-C-T P4_Gap **
hg19:Y:21371283-CTTT-C hg38:Y:19209397-CTTT-C 10×T**
hg19:Y:22113333-A-G hg38:Y:19951447-A-G **
hg19:Y:22458740-AT-A hg38:Y:20296854-AT-A DYZ19 **
hg19:Y:22468998-GT-G hg38:Y:20307112-GT-G DYZ19 **
hg19:Y:59004489-AAG-A hg38:Y:56858342-AAG-A ***
hg19:Y:4158533-T-A hg38:Y:4290492-T-A ***
hg19:Y:3532181-C-T hg38:Y:3664140-C-T ***
hg19:Y:4459935-T-A hg38:Y:4591894-T-A ***
hg19:Y:13398373-A-C hg38:Y:11242697-A-C ***
hg19:Y:13398377-T-C hg38:Y:11242701-T-C ***
hg19:Y:58991128-C-A hg38:Y:56844981-C-A ***
hg19:Y:4922309-CTT-C hg38:Y:5054268-CTT-C 14×T***
hg38:Y:10914717-A-C ***
hg38:Y:10682476-C-T ***
hg38:Y:56827544-TTCCTTTCCAT-T,TTCCATGCGAG ***
hg19:Y:28496058-T-G hg38:Y:26349911-T-G ***
hg38:Y:56850361-C-T ***
hg19:Y:13285652-A-T hg38:Y:11129976-A-T ***
hg19:Y:13477315-C-T hg38:Y:11321639-C-T ***
hg19:Y:4050510-AT-A hg38:Y:4182469-AT-A 10×T***
hg38:Y:56839594-G-A ***
hg19:Y:13295372-ATTT-A,ATTTT hg38:Y:11139696-ATTT-A,ATTTT 13×T***
hg19:Y:15230878-A-G hg38:Y:13118964-A-G ***
hg19:Y:5080362-CT-C,CTT hg38:Y:5212321-CT-C,CTT 15×T***
hg19:Y:9028440-T-C hg38:Y:9190831-T-C ***
hg19:Y:3193976-A-G hg38:Y:3325935-A-G ***
hg19:Y:3803428-A-C hg38:Y:3935387-A-C ***
hg19:Y:4592834-C-T hg38:Y:4724793-C-T ***
hg19:Y:5110060-A-C hg38:Y:5242019-A-C ***
hg19:Y:5383078-A-G hg38:Y:5515037-A-G ***
hg19:Y:6849495-A-G hg38:Y:6981454-A-G ***
hg19:Y:6892851-G-A hg38:Y:7024810-G-A ***
hg19:Y:8644534-T-A hg38:Y:8776493-T-A ***
hg19:Y:8776474-A-T hg38:Y:8908433-A-T ***
hg19:Y:9028452-T-G hg38:Y:9190843-T-G ***
hg19:Y:13566907-A-C hg38:Y:11411231-A-C ***
hg19:Y:15230874-T-C hg38:Y:13118960-T-C ***
hg19:Y:16707187-AT-A hg38:Y:14595307-AT-A ***
hg19:Y:16765998-G-A hg38:Y:14654118-G-A ***
hg19:Y:16768738-A-G hg38:Y:14656858-A-G ***
hg19:Y:17298770-A-T hg38:Y:15186890-A-T ***
hg19:Y:17524166-T-A hg38:Y:15412286-T-A 10×A***
hg19:Y:17812324-T-C hg38:Y:15700444-T-C ***
hg19:Y:18102176-A-C hg38:Y:15990296-A-C ***
hg19:Y:18780130-G-A hg38:Y:16668250-G-A ***
hg19:Y:19032111-T-C hg38:Y:16920231-T-C ***
hg19:Y:22580415-T-C hg38:Y:20418529-T-C ***
hg19:Y:22599079-G-A hg38:Y:20437193-G-A ***
hg19:Y:26153975-AAA-A,AAT hg38:Y:24007828-AAA-A,AAT P1_Y1 ***
hg19:Y:28706288-T-A hg38:Y:26560141-T-A ***
hg38:Y:56822034-ACTT-A ***
hg38:Y:56847899-T-G ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 9528381376615287369997835651
Used in age calculations1376615287369997835651
Counts of SNPs2215
Variant counts last updated 2025-11-27 03:16:09.


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