Tree Position

R-M269 > L23 > Z2103 > Z2106 > Z2108 > Z2110 > CTS7556 > Y5589 > BY250 > Y16148

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
13712652-T-A 11556976-T-A A+
10846812-T-A A*
10892565-T-C A*
28817141-G-C 26670994-G-C A*
28817080-G-T 26670933-G-T A*
28817037-G-C 26670890-G-C A*
13843722-A-G 11723016-A-G A*
10792446-C-A A*
10792441-C-A A*
10789840-C-T A*
10807029-A-C A*
10792383-T-G A*
19958285-C-CT 17846405-C-CT P5_Prx 10×TA*
28817056-T-C 26670909-T-C A*
56833052-A-G A*
10931009-C-T A*
10630936-C-A FT428039 A*
56836591-C-G A*
10805443-C-TG A*
10805435-A-C A*
28817051-C-G 26670904-C-G A*
10805402-C-T A*
10805401-T-C A*
3403730-G-GA 3535689-G-GA 10×AA*
10808520-T-A A*
56826679-A-G A*
13448363-C-A 11292687-C-A A*
10808472-T-C A*
10627042-T-G A*
28793764-T-G 26647617-T-G A*
10779614-C-T A*
10779606-T-C A*
10779598-T-C A*
10779566-A-C A*
10779560-A-G A*
26037946-G-GA 23891799-G-GA P1_Y1 12×AA*
56831250-A-G A*
10789839-A-T A*
10627035-T-G A*
10627036-G-A A*
13448414-A-T 11292738-A-T A*
28787313-G-GAAAT 26641166-G-GAAAT A*
56832207-C-G A*
10763275-C-A A*
13451271-C-T 11295595-C-T A*
56832476-C-A A*
11018705-C-T A*
25602239-T-TA 23456092-T-TA P1_gr1 16×AA*
13448362-T-A 11292686-T-A A*
10931013-T-A A*
10931008-T-G A*
28787355-A-T 26641208-A-T A*
13449725-A-T 11294049-A-T A*
10808511-A-G A*
10927413-A-T A*
10877775-T-C A*
28800090-T-A 26653943-T-A A*
10792371-T-G A*
22283830-C-A 20121944-C-A DYZ19 A*
13488820-C-A 11333144-C-A A*
22232752-C-A 20070866-C-A DYZ19 A*
5162650-C-CA 5294609-C-CA 11×AA*
13451393-T-A 11295717-T-A A*
13137323-A-T 10626809-A-T A*
56831620-C-A A*
56831979-A-T A*
28553274-G-GA 26407127-G-GA 11×AA*
18837739-A-AT 16725859-A-AT 10×TA*
28817128-G-T 26670981-G-T A*
10630912-A-T FT428037 A*
28817035-G-T 26670888-G-T A*
26180496-T-G 24034349-T-G P1_Y1 A*
13457997-G-A 11302321-G-A BY44459 A*
13470631-C-A 11314955-C-A A*
58977822-A-C 56831675-A-C A*
26478108-A-AAAAG 24331961-A-AAAAG P1_Y1 19×AAAGA*
13141438-A-T 10630924-A-T FT428038 A*
13472374-T-C 11316698-T-C A*
20778809-G-T 18616923-G-T P4_Prx A*
13295325-C-T 11139649-C-T A*
18348248-G-A 16236368-G-A P6_Prx A*
10776004-G-T A*
13140456-T-C 10629942-T-C A*
9932078-G-GT 10094469-G-GT 10×TA*
19695707-G-T 17583827-G-T P5_Prx A*
56833031-C-T A*
10669507-T-A A*
14833211-A-AT 12721278-A-AT 11×TA*
19712427-C-G 17600547-C-G P5_Prx A*
10775995-C-T A*
4857571-G-C 4989530-G-C FT152523 +
23283877-T-C 21121991-T-C BY189539 YY+
11673211-C-T +
8634846-G-A 8766805-G-A BY188967 YY+
6078053-T-G 6210012-T-G FTA43077 +
4853308-C-A 4985267-C-A FTA42765 +
23564846-G-A 21402960-G-A FTA37155 YY+
25520340-CT-C 23374193-CT-C P1_gr1 16×T+
17241981-G-A 15130101-G-A BY189221 YY+
2977270-G-C 3109229-G-C FTA42321 +
5277930-G-A 5409889-G-A FTA42856 +
16803248-C-T 14691368-C-T BY189199 YY+
21689431-T-C 19527545-T-C BY189429 YY+
13466010-A-G 11310334-A-G *
28785146-G-A 26638999-G-A *
13447037-C-CT 11291361-C-CT *
13692899-GGAATC-A 11537223-GGAATC-A *
13447027-T-C 11291351-T-C *
13470632-C-T 11314956-C-T *
28539174-C-CA 26393027-C-CA 20×A*
13447311-G-C 11291635-G-C *
13462181-A-G,T 11306505-A-G,T *
4748808-T-A 4880767-T-A *
4762829-C-T 4894788-C-T *
6402167-T-C 6534126-T-C *
10969235-T-C *
10940358-G-C *
11022868-ATTCTT-A *
10987184-T-C *
20473599-G-A 18311713-G-A P5_Dst **
16401981-G-A 14290101-G-A 9×TA**
5787083-ATAT-A 5919042-ATAT-A **
13468847-T-C 11313171-T-C **
18623838-A-G 16511958-A-G **
26068663-A-T 23922516-A-T P1_Y1 **
25955982-G-GCATA 23809835-G-GCATA P1_Y1 **
24873710-A-T 22727563-A-T g1 **
24873705-A-AG 22727558-A-AG g1 **
24873701-G-C 22727554-G-C g1 **
24416935-C-T 22270788-C-T **
22642856-T-C 20480970-T-C **
21449616-A-C 19287730-A-C **
18543969-A-T 16432089-A-T **
24873714-AC-A 22727567-AC-A g1 **
17900269-A-G 15788389-A-G **
17724958-T-C 15613078-T-C **
17540897-A-G 15429017-A-G **
16214770-A-T 14102890-A-T **
15185284-A-G 13073370-A-G **
7095098-A-G 7227057-A-G **
3869172-A-G 4001131-A-G **
25520303-G-T 23374156-G-T P1_gr1 **
18891184-C-CTT 16779304-C-CTT 13×T**
28707500-C-T 26561353-C-T FTB4632 10×T**
21753394-T-C **
20804885-G-A 18642999-G-A P4_Gap 15×TA**
10512423-GT-G **
13486880-CT-C 11331204-CT-C 26×T**
3459506-CT-C 3591465-CT-C 14×T**
8085438-CA-C 8217397-CA-C 15×A**
20473560-C-G 18311674-C-G P5_Dst **
18465534-G-T 16353654-G-T P6_Dst **
18511195-CA-C 16399315-CA-C P6_Dst 30×A**
28815254-A-G 26669107-A-G **
10805430-G-C ***
10942943-C-A ***
13447026-A-T 11291350-A-T ***
18565591-ATT-A 16453711-ATT-A 15×T***
4076256-CAA-C 4208215-CAA-C 21×A***
13453385-G-T 11297709-G-T ***
11001999-G-A FT92212 ***
13453366-T-A 11297690-T-A ***
16640195-G-A 14528315-G-A ***
5270726-C-A 5402685-C-A ***
10937732-CTCTAA-C ***
10807010-C-T ***
3869984-G-T 4001943-G-T ***
10673225-T-C ***
13705672-A-G 11549996-A-G ***
27967353-TATAG-T,TAGAG 25821206-TATAG-T,TAGAG P1_Y2 ***
10775963-G-T ***
5447983-G-GAT 5579942-G-GAT ***
7160894-CTT-C 7292853-CTT-C 16×T***
22093166-T-TTGTG 19931280-T-TTGTG 22×TG***
27862535-TGAGA-T 25716388-TGAGA-T S5199 P1_Y2 22×GA***
26133216-CAA-C 23987069-CAA-C P1_Y1 16×A***
24873720-G-C 22727573-G-C g1 ***
6091720-ATTTT-A 6223679-ATTTT-A 28×T***
13137394-T-C 10626880-T-C ***
23013507-T-A 20851621-T-A ***
17187566-CA-C 15075686-CA-C 28×A***
21923295-ATT-A 19761409-ATT-A 15×T***
14358221-C-A 12237516-C-A ***
13469368-T-G 11313692-T-G ***
21128259-TA-T,TAA 18966373-TA-T,TAA 18×A***
22316496-C-T 20154610-C-T DYZ19 ***
13487804-C-T 11332128-C-T ***
19270691-A-G 17158811-A-G ***
6634259-G-GT 6766218-G-GT 15×T***
24387373-C-CAT 22241226-C-CAT ***
18892854-GAA-G 16780974-GAA-G 13×A***
13466054-C-G 11310378-C-G ***
19165992-CT-C 17054112-CT-C 10×T***
2859987-CTT-C 2991946-CTT-C 16×T***
15733708-CA-C 13621828-CA-C 11×A***
13470659-T-A,C 11314983-T-A,C ***
22429195-A-T 20267309-A-T DYZ19 ***
28785148-A-G 26639001-A-G ***
17632570-GTTT-G 15520690-GTTT-G 22×T***
27998526-G-GT 25852379-G-GT P1_Y2 11×T***
21123134-G-GAA 18961248-G-GAA 10×A***
13462221-C-T 11306545-C-T ***
5960696-A-ATT 6092655-A-ATT 30×T***
13468869-G-A 11313193-G-A ***
10865023-A-G ***
10864986-A-G ***
15412771-CTT-C,CT 13300891-CTT-C,CT 15×T***
21753376-T-A ***
13453372-T-G 11297696-T-G ***
14363164-A-ATT 12242459-A-ATT 16×T***
9040702-T-C 9203093-T-C ***
13453478-C-CTTGTTGAATT 11297802-C-CTTGTTGAATT ***
13470669-G-A 11314993-G-A BY85844 ***
13446789-A-T 11291113-A-T ***
13936203-AGG-A 11815497-AGG-A ***
7199338-A-T 7331297-A-T ***
13611830-CTT-C 11456154-CTT-C 23×T***
12376216-ATT-A ***
13453488-C-A 11297812-C-A ***
13465936-AG-A 11310260-AG-A ***
13455783-C-A 11300107-C-A ***
9040703-A-G 9203094-A-G ***
13936202-A-G 11815496-A-G FT98031 ***
13468891-C-G 11313215-C-G ***
9508531-CTT-C,CT 9670922-CTT-C,CT 25×T***
13468894-G-A 11313218-G-A ***
13468909-G-A 11313233-G-A ***
28787316-A-AG 26641169-A-AG ***
21362988-T-A 19201102-T-A ***
13470660-A-AAG 11314984-A-AAG ***
5665577-T-A 5797536-T-A FGC69286 ***
10678881-G-C ***
10627024-A-C ***
4360890-CAA-C 4492849-CAA-C 16×A***
21617605-C-CAA 19455719-C-CAA 23×A***
13453463-C-T 11297787-C-T ***
13705674-T-A 11549998-T-A ***
10789856-G-C ***
10627028-T-C BY209732 ***
10987430-C-A ***
13455764-C-T 11300088-C-T ***
10627025-A-C ***
22487916-G-T 20326030-G-T DYZ19 ***
10627016-C-A ***
13468316-C-T 11312640-C-T ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B1646031517132695298478316837
Used in age calculations1517132695298478316837
Counts of SNPs66
Variant counts last updated 2022-07-13 03:00:39.

Big Tree Main Page