Tree Position

R-M269 > L23 > L51 > Z2118 > ~18571755-G-A > S1161 > S1141 > A613 > BY11299

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
24296590-A-T 22150443-A-T P3_t1 A+
28802589-G-C 26656442-G-C A*
18321446-A-AT 16209566-A-AT P6_Prx 16×TA*
13448465-G-A 11292789-G-A A*
22936277-A-T 20774391-A-T YYA*
13478456-C-T 11322780-C-T A*
20506394-G-C 18344508-G-C P5_Dst A*
21411406-T-TA 19249520-T-TA 10×AA*
28817371-G-C 26671224-G-C A*
28817026-G-T 26670879-G-T A*
22236174-C-A 20074288-C-A DYZ19 A*
17233900-C-A 15122020-C-A YYA*
26167299-G-GTA 24021152-G-GTA P1_Y1 A*
13489132-C-T 11333456-C-T A*
23471038-C-CA 21309152-C-CA 19×AA*
22290698-A-G 20128812-A-G DYZ19 A*
28817525-A-G 26671378-A-G A*
19795144-C-CA 17683264-C-CA P5_Prx 16×AA*
26025621-C-CT 23879474-C-CT P1_Y1 15×TA*
20884101-G-GA 18722215-G-GA P4_Dst 10×AA*
22312868-A-C 20150982-A-C DYZ19 A*
8517981-T-G 8649940-T-G BY73609 YY+
14426457-T-C 12305732-T-C BY38465 YY+
14211426-T-C 12090720-T-C YY+
9754481-C-A 9916872-C-A BY12048 +
8902685-T-G 9034644-T-G BY11300 Y+
8553476-A-C 8685435-A-C BY73959 YY+
17324585-AAAGG-A 15212705-AAAGG-A BY13593 5×AAGG+
6104870-G-A 6236829-G-A BY38464 +
3161459-A-T 3293418-A-T +
21748963-T-C 19587077-T-C YY+
2653696-G-A 2785655-G-A Y+
22526087-C-T 20364201-C-T BY38469 Y+
23441156-A-G 21279270-A-G Y+
15499785-GT-G 13387905-GT-G +
16232844-T-A 14120964-T-A YY+
19583-A-C +
17358443-A-G 15246563-A-G YY+
13810700-A-T 11689994-A-T BY41474 +
21469607-T-C 19307721-T-C BY12052 YY+
21341780-C-A 19179894-C-A BY38468 YY+
21045466-T-G 18883580-T-G BY12051 Y+
21923017-T-C 19761131-T-C YY+
19756610-C-T 17644730-C-T BY41475 P5_Prx +
19721370-G-A 17609490-G-A BY47830 P5_Prx +
22088267-CTTTT-C 19926381-CTTTT-C +
18608746-G-GT 16496866-G-GT +
18169674-A-G 16057794-A-G BY38467 YY+
18144461-T-G 16032581-T-G YY+
17875474-A-T 15763594-A-T BY38466 YY+
17435803-C-T 15323923-C-T YY+
19425608-G-. 17313728-G-. +
17409795-T-C 15297915-T-C BY12049 YY+
22444690-G-C 20282804-G-C FT456875 DYZ19 +
11643758-G-T *
6983589-CTGTG-C,CTG 7115548-CTGTG-C,CTG 20×TG*
8703042-CAT-C,CAC 8835001-CAT-C,CAC *
22275225-C-T 20113339-C-T DYZ19 *
17307508-A-AAGATAGAT 15195628-A-AAGATAGAT 11×AGAT*
21562049-T-TCA 19400163-T-TCA 18×CA*
22253920-C-T 20092034-C-T DYZ19 *
13819004-GATGGA-G 11698298-GATGGA-G 11×ATGGA*
11000397-G-C BY40453 **
10842542-T-C **
10857952-G-T **
6337855-G-T 6469814-G-T IR3_Dst **
10757371-A-T **
9929770-A-C 10092161-A-C **
13461359-A-G 11305683-A-G **
13461364-T-G 11305688-T-G **
11028224-C-A **
17549491-C-A 15437611-C-A **
14247580-C-A 12126874-C-A **
28793817-A-G 26647670-A-G **
28551139-G-T 26404992-G-T **
21738718-C-T 19576832-C-T **
25995031-CTATATATATA-C 23848884-CTATATATATA-C P1_Y1 12×TA**
22295911-T-A 20134025-T-A DYZ19 **
11015120-C-T **
13218966-CAAAAAA-C 11063290-CAAAAAA-C 21×A**
3203388-C-A 3335347-C-A **
21714806-A-G 19552920-A-G **
10778981-T-G **
10841973-TCATTC-T **
10942681-C-G **
10748016-C-T **
13461315-A-G 11305639-A-G **
28763267-C-A 26617120-C-A **
11665052-C-A **
10835621-G-T **
56843758-G-C **
11015199-C-T **
56883931-G-T **
13460838-G-T 11305162-G-T **
4009575-G-T 4141534-G-T **
13460842-T-C 11305166-T-C **
13460873-G-A 11305197-G-A **
13460888-T-C 11305212-T-C **
13460892-A-G 11305216-A-G **
10952217-T-C **
10952251-A-C **
10952259-A-T **
10952279-C-A **
3603893-C-T 3735852-C-T FT415349 **
4990164-G-T 5122123-G-T **
4310490-G-T 4442449-G-T **
23206726-G-T 21044840-G-T **
18397990-T-C 16286110-T-C P6_Gap **
19271271-C-T 17159391-C-T BY12050 **
20645348-T-TACATG 18483462-T-TACATG P4_Prx **
58856037-G-A 56734834-C-T **
26495227-A-C 24349080-A-C BY2479 P1_Y1 **
22841058-G-T 20679172-G-T **
23337734-C-A 21175848-C-A FTB84212 **
58854600-T-C 56736271-A-G **
25461409-C-A 23315262-C-A P2_r2 **
25461431-G-T 23315284-G-T P2_r2 **
25996198-C-A 23850051-C-A P1_Y1 **
27232221-G-T 25086074-G-T P1_g3 **
28572673-G-T 26426526-G-T **
20998300-CA-C 18836414-CA-C P4_Dst 28×A**
56736249-T-A **
56841454-C-A **
59026042-TC-T 56879895-TC-T **
58856100-T-A 56734771-A-T **
4531822-C-A 4663781-C-A **
8238274-C-T 8370233-C-T FT223886 **
4439494-C-A 4571453-C-A **
5096136-G-T 5228095-G-T **
5207548-C-A 5339507-C-A **
5376866-G-T 5508825-G-T **
5458387-G-T 5590346-G-T **
5901183-G-T 6033142-G-T **
10770416-C-T **
6337869-C-A 6469828-C-A IR3_Dst **
10844050-G-T **
16502426-G-T 14390546-G-T **
10844038-C-T FT433751 **
10751154-C-G **
10757386-A-ATTCTAAACAT **
10840634-C-A **
10873200-T-G **
10880272-C-A **
13955475-G-T 11834769-G-T **
13460821-T-A 11305145-T-A **
5537285-G-T 5669244-G-T **
10748021-C-GGGTAA **
10952257-C-T **
10816291-C-T **
19130738-CTT-C 17018858-CTT-C 33×T**
10873182-CCATTG-C **
10924391-T-G **
10959529-GACTCC-G **
10816263-A-T **
10816264-T-C **
10816272-CATTCCACGCA-C **
10816294-T-C **
10969310-C-G **
10816299-T-C **
10992979-C-T **
10763407-C-CA **
9929726-T-C 10092117-T-C **
18596142-C-CAT 16484262-C-CAT **
10925548-G-C **
10745027-A-C **
13461360-C-T 11305684-C-T **
11006867-A-T **
10745029-A-G **
5426086-C-A 5558045-C-A **
10745021-A-T **
20216469-G-GTGTA 18054583-G-GTGTA P5_Dst **
10745015-A-C **
6314976-T-TG 6446935-T-TG IR3_Dst **
10993011-T-A **
24267227-AC-A 22121080-AC-A P3_b1 **
10946625-A-C **
10892530-T-C **
10841949-C-T **
10979564-A-G **
10804323-A-C **
10989495-G-T **
10745032-A-C **
10816249-G-T **
10989491-C-T **
10821854-T-C **
56843711-G-T **
10816257-A-C FT432443 **
10749733-A-G **
13460826-G-A 11305150-G-A **
10992987-T-A **
28497309-T-C 26351162-T-C FT225221 **
17885662-C-A 15773782-C-A **
56845176-G-A **
10776237-T-C **
10776230-C-T **
56845180-T-C **
10946586-G-A **
10946577-T-C ***
6091977-G-T 6223936-G-T **
11028207-C-T **
11011826-G-A FT393621 **
10744995-C-T **
10926662-G-A **
10821840-T-C **
26015299-A-T 23869152-A-T P1_Y1 **
10749783-G-A **
10749739-C-A **
18857575-CTT-C 16745695-CTT-C 15×T***
13489064-C-G 11333388-C-G ***
28529840-G-GA 26383693-G-GA 10×A***
13478483-T-A 11322807-T-A ***
17994882-A-C 15883002-A-C P7_Prx ***
13485613-A-G,T 11329937-A-G,T ***
13719473-A-T 11563797-A-T ***
19345145-A-C 17233265-A-C ***
10989538-C-A ***
9034655-C-CA 9197046-C-CA 12×A***
10880289-C-T BY177783 ***
8030055-AAG-A 8162014-AAG-A ***
21202529-C-A 19040643-C-A ***
16063428-C-A 13951548-C-A ***
16719914-C-A 14608034-C-A ***
7269610-CTTT-C 7401569-CTTT-C 22×T***
58848138-A-T 56742733-T-A ***
58981812-C-A 56835665-C-A ***
22979351-C-A 20817465-C-A ***
58981821-A-G 56835674-A-G ***
8016938-C-CTT 8148897-C-CTT 25×T***
21934732-G-A 19772846-G-A ***
18189488-C-A 16077608-C-A ***
8874970-CTT-C 9006929-CTT-C 17×T***
14679612-C-T 12567678-C-T ***
17815789-A-T 15703909-A-T FGC7452 ***
24413246-TTTG-T 22267099-TTTG-T 8×TTG***
28535982-C-G 26389835-C-G BY46880 ***
9524080-CAT-C 9686471-CAT-C ***
10020526-G-C 10182917-G-C ***
9127506-CTT-C 9289897-CTT-C 22×T***
10761163-T-C ***
56742700-T-G ***
10761178-C-T ***
24407145-AT-A 22260998-AT-A ***
2810366-ATTT-A 2942325-ATTT-A 23×T***
10992319-C-T ***
10992352-C-A ***
10992360-C-A ***
10992362-T-C ***
15315421-C-A 13203526-C-A ***
10989508-C-T ***
7981890-C-A 8113849-C-A ***
10989553-C-T ***
18232213-C-A 16120333-C-A ***
11003966-A-C ***
16060047-C-A 13948167-C-A ***
10744453-A-C ***
10983783-C-A ***
13461377-A-G 11305701-A-G ***
19517173-C-A 17405293-C-A ***
10645848-C-T ***
10987830-A-G ***
10825671-C-G ***
17515584-TAAAA-T 15403704-TAAAA-T 17×A***
16545414-CAAAAAAAAAA-C 14433534-CAAAAAAAAAA-C 24×A***
10761192-A-T ***
10761194-C-T ***
11015144-G-C,T ***
13461085-T-C 11305409-T-C ***
10880348-A-G ***
15491909-ATGTGTG-A 13380029-ATGTGTG-A 16×TG***
10826192-A-C ***
10792813-C-A ***
10946608-C-G ***
9852676-C-A 10015067-C-A ***
9223139-G-A 9385530-G-A ***
15928371-CTTTT-C,CTTT 13816491-CTTTT-C,CTTT 26×T***
10673885-T-C ***
10892525-T-C ***
8403272-CAAAAAA-C,CA 8535231-CAAAAAA-C,CA 28×A***
11018841-C-A ***
56742685-T-C ***
13476983-A-C 11321307-A-C ***
10946565-A-T ***
7730475-C-CATAG 7862434-C-CATAG ***
5393360-A-G 5525319-A-G ***
10948148-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

Kit: B37751003369981652678011608
Used in age calculations1003369981652678011608
Counts of SNPs2118
Variant counts last updated 2022-07-24 03:12:26.

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