Tree Position

A0-T-YP2191 > P305[A1] > A1b > BT/A1b2 > M168/PF1416[CT] > P143[CF] > M89/PF2746[F] > F1329/M3658[GHI > F929[HIJK] > IJK > IJ > J > J1 > Z2215 > Z2217 > Y3473

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

Position Blocks Names Region McDonald BED combBED STRBigY3
885778
hg19:Y:19696647-A-G hg38:Y:17584767-A-G P5_Prx A+
hg19:Y:19707658-A-G hg38:Y:17595778-A-G BY211915 P5_Prx A+
hg19:Y:22310442-G-T hg38:Y:20148556-G-T DYZ19 A+
hg19:Y:22450641-C-T hg38:Y:20288755-C-T DYZ19 A+
hg19:Y:26249669-T-TA hg38:Y:24103522-T-TA P1_Y1 8×AA*
hg19:Y:13480348-A-T hg38:Y:11324672-A-T A*
hg19:Y:28817035-G-A hg38:Y:26670888-G-A A*
hg19:Y:19729431-T-C hg38:Y:17617551-T-C P5_Prx A*
hg19:Y:6283260-C-T hg38:Y:6415219-C-T IR3_Dst A*
hg19:Y:18372073-G-A hg38:Y:16260193-G-A P6_Prx A*
hg19:Y:19681495-A-G hg38:Y:17569615-A-G P5_Prx A*
hg19:Y:19706731-G-A hg38:Y:17594851-G-A P5_Prx A*
hg19:Y:19738763-G-GA hg38:Y:17626883-G-GA P5_Prx A*
hg19:Y:19782256-G-T hg38:Y:17670376-G-T P5_Prx A*
hg19:Y:20732955-A-G hg38:Y:18571069-A-G P4_Prx A*
hg19:Y:20781286-C-T hg38:Y:18619400-C-T P4_Prx A*
hg19:Y:24347757-C-T hg38:Y:22201610-C-T P3_t1 A*
hg19:Y:25954254-C-T hg38:Y:23808107-C-T P1_Y1 A*
hg19:Y:26026656-C-T hg38:Y:23880509-C-T P1_Y1 A*
hg19:Y:26051928-G-T hg38:Y:23905781-G-T P1_Y1 A*
hg19:Y:26098353-T-C hg38:Y:23952206-T-C P1_Y1 A*
hg19:Y:26116050-A-G hg38:Y:23969903-A-G P1_Y1 A*
hg19:Y:26118836-A-G hg38:Y:23972689-A-G P1_Y1 A*
hg19:Y:28817281-C-G hg38:Y:26671134-C-G A*
hg19:Y:28817306-G-T hg38:Y:26671159-G-T A*
hg19:Y:3712371-C-T hg38:Y:3844330-C-T Y45032 +
hg19:Y:10025720-C-T hg38:Y:10188111-C-T Y4354S12993 Y+
hg19:Y:13688670-C-A hg38:Y:11532994-C-A BY54335 DYZ17 +
hg19:Y:22480124-G-T hg38:Y:20318238-G-T Z31590BY44036 DYZ19 +
hg19:Y:22478228-T-C hg38:Y:20316342-T-C DYZ19 +
hg19:Y:2778392-G-T hg38:Y:2910351-G-T FT268775 YY+
hg19:Y:2831131-A-G hg38:Y:2963090-A-G FT268784 YY+
hg19:Y:3572675-G-T hg38:Y:3704634-G-T FT268884 +
hg19:Y:3687087-C-A hg38:Y:3819046-C-A FT268902 +
hg19:Y:5030735-T-G hg38:Y:5162694-T-G +
hg19:Y:5074846-G-A hg38:Y:5206805-G-A FT269129 +
hg19:Y:5784422-C-G hg38:Y:5916381-C-G FT269250 +
hg19:Y:6033949-A-T hg38:Y:6165908-A-T FT269297 +
hg19:Y:6661521-C-T hg38:Y:6793480-C-T FT269372 YY+
hg19:Y:6674875-CA-C hg38:Y:6806834-CA-C +
hg19:Y:6877747-C-T hg38:Y:7009706-C-T FT269405 YY+
hg19:Y:7137599-T-C hg38:Y:7269558-T-C FT269442 YY+
hg19:Y:7706957-C-A hg38:Y:7838916-C-A YY+
hg19:Y:8363181-C-A hg38:Y:8495140-C-A FT269574 YY+
hg19:Y:8446425-C-T hg38:Y:8578384-C-T FT269590 YY+
hg19:Y:8483613-G-A hg38:Y:8615572-G-A YY+
hg19:Y:8868779-G-T hg38:Y:9000738-G-T FT269645 Y+
hg19:Y:9117886-C-T hg38:Y:9280277-C-T FT269672 Y+
hg19:Y:9646024-A-C hg38:Y:9808415-A-C FT269690 IR3_Prx +
hg38:Y:10808720-C-A FT432160 +
hg38:Y:10809398-C-T FT432188 +
hg38:Y:10865946-C-T FT434669 +
hg19:Y:13531477-G-A hg38:Y:11375801-G-A +
hg19:Y:13673858-G-A hg38:Y:11518182-G-A FT447949 DYZ17 +
hg38:Y:11674618-C-G FT451352 DYZ17 +
hg38:Y:11677585-A-T FT451500 DYZ17 +
hg19:Y:14055124-T-G hg38:Y:11934418-T-G YY+
hg19:Y:14097446-G-A hg38:Y:11976740-G-A YY+
hg19:Y:14353178-G-T hg38:Y:12232473-G-T YY+
hg19:Y:14370419-C-T hg38:Y:12249715-C-T FT269848 YY+
hg19:Y:14413638-C-T hg38:Y:12292935-C-T FTA30970 YY+
hg19:Y:14588463-G-A hg38:Y:12476663-G-A YY+
hg19:Y:14803743-T-C hg38:Y:12691814-T-C FT269909 YY+
hg19:Y:15239865-G-T hg38:Y:13127951-G-T FT269956 Y+
hg19:Y:15743358-C-T hg38:Y:13631478-C-T Y+
hg19:Y:15993876-G-A hg38:Y:13881996-G-A FT270068 YY+
hg19:Y:16046889-T-C hg38:Y:13935009-T-C Y+
hg19:Y:16484177-T-C hg38:Y:14372297-T-C YY+
hg19:Y:16592225-G-A hg38:Y:14480345-G-A FTA31611 YY+
hg19:Y:16623136-G-T hg38:Y:14511256-G-T Y+
hg19:Y:17011420-G-A hg38:Y:14899540-G-A YY+
hg19:Y:17170316-G-A hg38:Y:15058436-G-A FTA31801 YY+
hg19:Y:17342236-G-A hg38:Y:15230356-G-A FT270227 YY+
hg19:Y:17514941-C-T hg38:Y:15403061-C-T FT270252 YY+
hg19:Y:17561281-G-A hg38:Y:15449401-G-A YY+
hg19:Y:17615893-T-A hg38:Y:15504013-T-A FT270271 YY+
hg19:Y:17639854-G-A hg38:Y:15527974-G-A FT5739 Y+
hg19:Y:18129548-T-G hg38:Y:16017668-T-G FT270349 YY+
hg19:Y:18214328-C-A hg38:Y:16102448-C-A FT270364 YY+
hg19:Y:18527955-C-T hg38:Y:16416075-C-T FT270372 P6_Dst +
hg19:Y:18609051-A-G hg38:Y:16497171-A-G FT270379 YY+
hg19:Y:18981609-T-C hg38:Y:16869729-T-C YY+
hg19:Y:19075411-C-T hg38:Y:16963531-C-T Y+
hg19:Y:19080281-C-T hg38:Y:16968401-C-T FT270462 YY+
hg19:Y:19090571-T-C hg38:Y:16978691-T-C FT270464 YY+
hg19:Y:20697091-C-T hg38:Y:18535205-C-T P4_Prx +
hg19:Y:21189082-T-A hg38:Y:19027196-T-A YY+
hg19:Y:21189083-CA-C hg38:Y:19027197-CA-C +
hg19:Y:21259193-C-T hg38:Y:19097307-C-T YY+
hg19:Y:21825617-T-A hg38:Y:19663731-T-A FT270637 YY+
hg19:Y:22273400-C-T hg38:Y:20111514-C-T BY215587 DYZ19 +
hg19:Y:22275378-C-G hg38:Y:20113492-C-G DYZ19 +
hg19:Y:22299093-A-G hg38:Y:20137207-A-G DYZ19 +
hg19:Y:22302110-G-C hg38:Y:20140224-G-C FT455540 DYZ19 +
hg19:Y:22303079-T-C hg38:Y:20141193-T-C DYZ19 +
hg19:Y:22316636-G-T hg38:Y:20154750-G-T DYZ19 +
hg19:Y:22680859-G-C hg38:Y:20518973-G-C YY+
hg19:Y:23236496-C-T hg38:Y:21074610-C-T Y+
hg19:Y:23393424-A-G hg38:Y:21231538-A-G YY+
hg19:Y:23438171-G-A hg38:Y:21276285-G-A FT270844 YY+
hg19:Y:23631457-T-A hg38:Y:21469571-T-A FT270865 YY+
hg19:Y:23995442-GTTGAT-G hg38:Y:21849295-GTTGAT-G +
hg19:Y:28611797-T-A hg38:Y:26465650-T-A FT270941 +
hg19:Y:28769381-C-A hg38:Y:26623234-C-A Y+
hg19:Y:28805449-AG-A hg38:Y:26659302-AG-A +
hg38:Y2:12016-C-T +
hg38:Y:10988574-CCATTCCACTC-C,CCACTCTACTG *
hg38:Y:10866268-A-T *
hg38:Y:10866289-T-C *
hg19:Y:18365481-GTA-G hg38:Y:16253601-GTA-G P6_Prx *
hg38:Y:10866278-A-T *
hg19:Y:4618621-A-G hg38:Y:4750580-A-G FT4023 *
hg38:Y:10866261-C-T *
hg19:Y:25912111-T-G hg38:Y:23765964-T-G P1_Y1 *
hg19:Y:16692757-GAAAAAAAAA-G hg38:Y:14580877-GAAAAAAAAA-G 27×A**
hg19:Y:18390083-C-CAA hg38:Y:16278203-C-CAA P6_Gap 19×A**
hg19:Y:14396436-C-A hg38:Y:12275732-C-A FT269855 **
hg19:Y:21393939-C-T hg38:Y:19232053-C-T FTA37641 **
hg19:Y:23713748-A-ATGTG hg38:Y:21551862-A-ATGTG 19×TG**
hg38:Y:10647167-T-C **
hg19:Y:7233014-G-A hg38:Y:7364973-G-A **
hg19:Y:4028769-AT-A hg38:Y:4160728-AT-A 9×T**
hg19:Y:20333922-T-A hg38:Y:18172036-T-A P5_Dst **
hg19:Y:5082944-A-ATT hg38:Y:5214903-A-ATT 12×T**
hg19:Y:26073058-C-CTGTG hg38:Y:23926911-C-CTGTG P1_Y1 14×TG**
hg19:Y:28804418-G-A hg38:Y:26658271-G-A **
hg19:Y:14113930-C-T hg38:Y:11993224-C-T **
hg19:Y:2868206-T-C hg38:Y:3000165-T-C FT268788 **
hg19:Y:3232052-C-A hg38:Y:3364011-C-A **
hg19:Y:3483475-C-T hg38:Y:3615434-C-T FT268874 **
hg19:Y:3988956-ATAAAG-A hg38:Y:4120915-ATAAAG-A **
hg19:Y:5346136-T-A hg38:Y:5478095-T-A **
hg19:Y:5588022-T-C hg38:Y:5719981-T-C **
hg19:Y:7269799-T-C hg38:Y:7401758-T-C **
hg19:Y:8832209-A-T hg38:Y:8964168-A-T FT269640 **
hg19:Y:9768018-A-T hg38:Y:9930409-A-T **
hg38:Y:10867199-C-T **
hg19:Y:13529391-C-T hg38:Y:11373715-C-T **
hg19:Y:13598883-T-C hg38:Y:11443207-T-C FT446283 **
hg19:Y:13696343-G-C hg38:Y:11540667-G-C DYZ17 **
hg19:Y:13707305-A-G hg38:Y:11551629-A-G DYZ17 **
hg19:Y:14167871-G-A hg38:Y:12047165-G-A **
hg19:Y:14291272-T-A hg38:Y:12170566-T-A **
hg19:Y:14396436-C-CAA hg38:Y:12275732-C-CAA **
hg19:Y:15320751-T-A hg38:Y:13208869-T-A FTA37638 **
hg19:Y:15799229-TTC-T hg38:Y:13687349-TTC-T **
hg19:Y:16047975-T-G hg38:Y:13936095-T-G **
hg19:Y:16062336-T-C hg38:Y:13950456-T-C FTA37639 **
hg19:Y:16417451-T-C hg38:Y:14305571-T-C **
hg19:Y:16417616-T-A hg38:Y:14305736-T-A **
hg19:Y:16679275-A-T hg38:Y:14567395-A-T **
hg19:Y:16882031-G-C hg38:Y:14770151-G-C FT270165 **
hg19:Y:17026910-C-CT hg38:Y:14915030-C-CT **
hg19:Y:17155399-T-C hg38:Y:15043519-T-C **
hg19:Y:17265215-G-A hg38:Y:15153335-G-A **
hg19:Y:17624637-G-A hg38:Y:15512757-G-A **
hg19:Y:18796655-T-C hg38:Y:16684775-T-C **
hg19:Y:18820730-C-G hg38:Y:16708850-C-G FT270421 **
hg19:Y:18974362-G-A hg38:Y:16862482-G-A **
hg19:Y:19438446-GAAGAAAGAAAGAAAGAAAGAAAGA-G hg38:Y:17326566-GAAGAAAGAAAGAAAGAAAGAAAGA-G 15×AAGA**
hg19:Y:21348306-G-T hg38:Y:19186420-G-T FTA37640 **
hg19:Y:22146153-G-A hg38:Y:19984267-G-A FT270688 **
hg19:Y:22258019-A-T hg38:Y:20096133-A-T BY214542 DYZ19 **
hg19:Y:22314301-A-G hg38:Y:20152415-A-G DYZ19 **
hg19:Y:22430552-T-C hg38:Y:20268666-T-C DYZ19 **
hg19:Y:23038096-T-C hg38:Y:20876210-T-C **
hg19:Y:25905039-T-C hg38:Y:23758892-T-C P1_Y1 **
hg19:Y:28693170-A-C hg38:Y:26547023-A-C **
hg19:Y:28804409-G-A hg38:Y:26658262-G-A **
hg19:Y:26170512-A-G hg38:Y:24024365-A-G A4477 P1_Y1 ***
hg19:Y:23072572-A-AAAAAC hg38:Y:20910686-A-AAAAAC 6×AAAAC***
hg19:Y:16431229-CAA-C,CA hg38:Y:14319349-CAA-C,CA 15×A***
hg19:Y:13461115-T-G hg38:Y:11305439-T-G ***
hg19:Y:13486576-C-T hg38:Y:11330900-C-T ***
hg19:Y:16344495-TTTC-T hg38:Y:14232615-TTTC-T 6×TTC***
hg38:Y:10866287-C-T ***
hg19:Y:13485557-G-C hg38:Y:11329881-G-C ***
hg19:Y:17333906-C-T hg38:Y:15222026-C-T 10×T***
hg19:Y:16679374-C-G hg38:Y:14567494-C-G ***
hg19:Y:18443590-CAT-C hg38:Y:16331710-CAT-C P6_Dst ***
hg19:Y:14784701-CTTT-C,CTTTT hg38:Y:12672771-CTTT-C,CTTTT 22×T***
hg19:Y:14420787-C-CTT hg38:Y:12300062-C-CTT 18×T***
hg19:Y:14179422-G-A hg38:Y:12058716-G-A ***
hg19:Y:7092330-A-T hg38:Y:7224289-A-T ***
hg19:Y:8160178-CAA-C,CA hg38:Y:8292137-CAA-C,CA 20×A***
hg19:Y:13832555-ATGGAATGGAA-A,ATGGAGTGGAG hg38:Y:11711849-ATGGAATGGAA-A,ATGGAGTGGAG DYZ17 ***
hg19:Y:5571890-CTTTTT-C hg38:Y:5703849-CTTTTT-C 16×T***
hg19:Y:15971225-CT-C,CTT hg38:Y:13859345-CT-C,CTT 18×T***
hg19:Y:9416731-GT-G,GTT hg38:Y:9579122-GT-G,GTT 23×T***
hg19:Y:6604084-CT-C,CTT hg38:Y:6736043-CT-C,CTT 17×T***
hg19:Y:13323494-CA-C,CAA hg38:Y:11167818-CA-C,CAA 24×A***
hg19:Y:3446410-G-A hg38:Y:3578369-G-A ***
hg19:Y:3921012-T-C hg38:Y:4052971-T-C ***
hg19:Y:5555074-A-T hg38:Y:5687033-A-T ***
hg19:Y:7148999-T-G hg38:Y:7280958-T-G ***
hg19:Y:9019056-A-T hg38:Y:9181447-A-T ***
hg19:Y:10065004-A-G hg38:Y:10227395-A-G ***
hg19:Y:13588071-A-T hg38:Y:11432395-A-T ***
hg19:Y:13808728-T-A hg38:Y:11688022-T-A DYZ17 ***
hg19:Y:14925515-G-A hg38:Y:12813580-G-A ***
hg19:Y:19395039-C-T hg38:Y:17283159-C-T ***
hg19:Y:22255902-A-G hg38:Y:20094016-A-G DYZ19 ***
hg19:Y:27822252-T-C hg38:Y:25676105-T-C P1_Y2 ***
hg38:Y:56887140-T-TTG,TTGTTGT ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: 8857781487850293790888273965
Used in age calculations1487850293790888273965
Counts of SNPs4641
Variant counts last updated 2025-11-30 02:45:35.



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