Tree Position

R-P312/S116 > Z40481 > ZZ11 > DF27/S250 > Z195/S355 > Z198 > Z46513 > ZS312 > Z262 > M167 > Z264 > Z205 > ~22224168-A-C > Z206/S235 > Z208/S362 > Z207/S251 > CTS9762 > CTS4299 > BY12112

Unique Mutations

The mutations unique to this man are summarized in the table below. Those with a '+' or '*' confidence level are considered by FamilyTreeDNA or FullGenomesCorp to be high quality SNPs/INDELs. For completeness, all other mutations of lesser confidence are included as well. These additional mutations may be useful for distinguishing between very closely related men.

Occasionally, some of the mutations listed here will be thought to be shared with other men in which case they might appear in upstream blocks on the tree. When this happens, the 'Blocks' field will indicate what block they appear in. Such a situation might arise with BigY men if the BED data suggests another man may be positive for a SNP, even though it doesn't appear in his VCF data. It might also happen if Chromo2 testing or Sanger sequencing of other men not on the tree show the SNP to be shared.

POS-REF-ALT (hg19) POS-REF-ALT (hg38) Blocks Names Region McDonald BED combBED STRBigY3
B459802
22216902-G-A 20055016-G-A FGC20983 DYZ19 A+
16130280-G-T 14018400-G-T P8_Prx A*
10094103-C-T 10256494-C-T A*
19781034-G-C 17669154-G-C P5_Prx A*
6180676-G-A 6312635-G-A IR3_Dst A*
14105729-T-TA 11985023-T-TA 10×AA*
13687748-C-T 11532072-C-T A*
10631718-C-A A*
56831365-A-C A*
22232040-C-G 20070154-C-G DYZ19 A*
19827173-C-T 17715293-C-T P5_Prx A*
3191853-G-A 3323812-G-A FT62388 +
14045290-C-A 11924584-C-A FT62995 YY+
13455351-T-C 11299675-T-C FT443817 +
10964707-G-A FT387198 +
10673401-C-G FT387197 +
4173685-G-A 4305644-G-A FT62507 +
9918226-A-T 10080617-A-T FT333224 Y+
4305071-C-T 4437030-C-T FT62522 +
14821782-G-A 12709849-G-A YY+
4382865-A-T 4514824-A-T FT62531 +
5113077-T-C 5245036-T-C FT62606 +
5385858-G-A 5517817-G-A FT386810 +
5516310-C-A 5648269-C-A FT386848 +
9772585-G-A 9934976-G-A FT62950 Y+
9069572-A-T 9231963-A-T FT62933 Y+
8642208-G-A 8774167-G-A FT62891 YY+
6093587-G-A 6225546-G-A FT62702 +
7169457-A-G 7301416-A-G YY+
7115237-T-A 7247196-T-A FT62766 Y+
14245545-G-T 12124839-G-T FT63013 YY+
8890683-G-C 9022642-G-C FT62921 Y+
15113409-T-C 13001496-T-C FT63073 YY+
22034700-C-A 19872814-C-A FT63536 YY+
24575358-C-T 22429211-C-T P3_t2 +
23751949-C-T 21590063-C-T FT63644 Y+
23207715-C-T 21045829-C-T Y+
22672959-T-C 20511073-T-C FT44000 YY+
22439841-C-T 20277955-C-T FT456342 DYZ19 +
18726882-C-T 16615002-C-T BY123464 YY+
22206710-A-G 20044824-A-G FT63552 YY+
16072740-A-T 13960860-A-T FT63150 Y+
22128161-T-A 19966275-T-A FT63542 YY+
21070245-T-C 18908359-T-C FT385711 YY+
19065289-C-A 16953409-C-A FT63390 Y+
18823771-C-T 16711891-C-T FT63372 YY+
17505530-C-T 15393650-C-T FT63280 YY+
17385626-C-G 15273746-C-G FT63265 YY+
17152616-T-A 15040736-T-A FT63235 YY+
16931936-A-G 14820056-A-G FT63207 YY+
7105415-G-C 7237374-G-C FT384139 YY+
6834931-G-A 6966890-G-A FT62738 YY+
9845665-T-TTAAG 10008056-T-TTAAG *
22230057-A-T 20068171-A-T DYZ19 *
18609322-T-TCA 16497442-T-TCA 8×CA*
22433716-A-G 20271830-A-G DYZ19 *
56855666-G-A *
56880085-G-T *
13487822-A-G 11332146-A-G *
6753292-G-A 6885251-G-A FT62732 **
6671884-T-C 6803843-T-C **
18059481-AT-A 15947601-AT-A **
22128509-CTTA-C 19966623-CTTA-C 5×TTA**
21575479-A-G 19413593-A-G **
4764721-T-TTA 4896680-T-TTA 9×TA**
28543953-C-CA 26397806-C-CA 11×A**
22167124-T-C 20005238-T-C FT63547 **
3391605-CA-C 3523564-CA-C 11×A**
16573297-T-C 14461417-T-C **
22015024-CA-C 19853138-CA-C 13×A**
22486809-T-G 20324923-T-G DYZ19 **
22505786-A-G 20343900-A-G DYZ19 **
13722877-A-AGAATG 11567201-A-AGAATG 10×GAATG**
23044023-T-C 20882137-T-C **
18953003-AAAAG-A 16841123-AAAAG-A 4×AAAG**
23793406-G-A 21631520-G-A FT182817 **
28531044-A-G 26384897-A-G **
16683194-T-C 14571314-T-C **
6753287-A-G 6885246-A-G L684 **
3746609-G-T 3878568-G-T FT120482 **
6753291-G-C 6885250-G-C L669 **
3686526-AAGAC-A 3818485-AAGAC-A **
4028721-TA-T 4160680-TA-T **
9909827-G-A 10072218-G-A **
13734480-T-G 11578804-T-G **
5638923-C-T 5770882-C-T **
5638922-C-T 5770881-C-T **
7468262-T-A 7600221-T-A IR1_L **
5814488-GA-G,GAAA 5946447-GA-G,GAAA 18×A***
22962414-GTTTT-G 20800528-GTTTT-G 20×T***
21757568-C-T ***
22050254-G-A 19888368-G-A ***
4797458-T-G 4929417-T-G FT62573 ***
18914181-C-T 16802301-C-T ZS2623 ***
22441258-G-A 20279372-G-A DYZ19 ***
4376335-G-A 4508294-G-A FT409655 ***
4227387-T-C 4359346-T-C ***
13487821-C-T 11332145-C-T ***
28617525-T-C 26471378-T-C ***
4993786-ATG-A 5125745-ATG-A 10×TG***
3430749-A-C 3562708-A-C ***
21756989-G-A 19595103-G-A ***
13476966-T-A 11321290-T-A ***
14453726-AAG-A 12332999-AAG-A ***
13808752-A-G 11688046-A-G ***
16084221-G-A 13972341-G-A ***
13808706-AAT-A 11688000-AAT-A ***
13463418-G-A 11307742-G-A ***
15604354-CA-C,CAA 13492474-CA-C,CAA 20×A***
13488626-TT-C,CT 11332950-TT-C,CT ***
17109091-AACACACACAC-A,AAC 14997211-AACACACACAC-A,AAC 25×AC***
56851994-G-A ***
6027539-AT-A 6159498-AT-A 10×T***
5492375-C-CT 5624334-C-CT 9×T***
13964940-G-A 11844234-G-A ***
18271018-GTT-G,GTTTTT 16159138-GTT-G,GTTTTT 17×T***
10004847-TTGTG-T 10167238-TTGTG-T 10×TG***
18707108-TG-T 16595228-TG-T ***
13709311-G-A 11553635-G-A ***
3403261-CAAAA-C,CAA 3535220-CAAAA-C,CAA 30×A***
13421679-C-CT 11266003-C-CT 14×T***
15179010-CAAAAAA-C 13067096-CAAAAAA-C 25×A***
5101208-GT-G 5233167-GT-G 11×T***
17857853-C-A 15745973-C-A ***

In the table above, the meaning of the confidence field depends on whether the data comes from an FTDNA kit or an FGC kit. For FTDNA kits, + implies a "PASS" result with just one possible variant, * indicates a "PASS" but with multiple variants, ** indicates "REJECTED" with just a single variant, and *** indicates "REJECTED" with multiple possible variants. 'A*' are heterozygous variants not called by FTDNA, but still pulled from the VCF file. For FGC kits, + indicates over 99% likely genuine (95% for INDELs); * over 95% likely genuine (90% for INDELs); ** about 40% likely genuine; *** about 10% likely genuine. Manual entries read directly from a BAM file will be either + indicating positive, or * indicating that the data show a mixture of possible variants.

For the FTDNA kits, the BED data is encoded in the background color of the cells. Those cells with a white background have coverage, those with a grey background indicate no coverage in the BED file, and those with a pink background indicate the mutation is on the edge of a coverage region. These pink regions often indicate that the individual may be positive for a SNP even if there is no corresponding entry in the vcf file.

The combBED column indicates whether or not the mutation is a SNP and falls in the combBED region defined in Defining a New Rate Constant for Y-Chromosome SNPs based on Full Sequencing Data by Dmitry Adamov, Vladimir Guryanov, Sergey Karzhavin, Vladimir Tagankin, Vadim Urasin.

The McDonald BED column indicates whether or not the mutation is a SNP and falls in the BED region used by Dr. Iain McDonald in the age analysis he does for R-U106 men.

Age Analysis Information (work in progress)

AllMcDonaldYFull
Kit: B4598021493076093881868258266
Used in age calculations1493076093881868258266
Counts of SNPs2522
Variant counts last updated 2021-10-11 02:50:31.



Big Tree Main Page